Wall clock time and date at job start Mon Mar 30 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99748 * 2 1 4 4 H 1.48498 * 109.47269 * 270.00219 * 3 2 1 5 5 H 1.48498 * 109.47088 * 30.00379 * 3 2 1 6 6 H 1.48500 * 109.46915 * 150.00403 * 3 2 1 7 7 C 1.37872 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00009 * 359.97438 * 7 2 1 9 9 C 1.50710 * 120.00253 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47376 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46993 * 54.99404 * 10 9 7 12 12 N 1.46906 * 109.47127 * 295.00251 * 10 9 7 13 13 C 1.50699 * 109.47254 * 175.00113 * 10 9 7 14 14 C 1.38012 * 119.88900 * 100.02073 * 13 10 9 15 15 C 1.38249 * 119.95610 * 179.97438 * 14 13 10 16 16 C 1.38152 * 119.97976 * 0.07835 * 15 14 13 17 17 C 1.38455 * 120.31930 * 0.02562 * 16 15 14 18 18 C 1.38418 * 119.83219 * 359.85608 * 17 16 15 19 19 O 1.35844 * 121.79800 * 180.26425 * 18 17 16 20 20 C 1.42832 * 117.86175 * 342.76358 * 19 18 17 21 21 C 1.53405 * 108.37921 * 49.18466 * 20 19 18 22 22 C 1.50860 * 118.75262 * 179.60601 * 17 16 15 23 23 H 0.96995 * 120.00363 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46735 * 59.99787 * 9 7 2 25 25 H 1.08998 * 109.46952 * 300.00043 * 9 7 2 26 26 H 1.00895 * 111.00226 * 176.04220 * 12 10 9 27 27 H 1.00895 * 110.99659 * 300.00096 * 12 10 9 28 28 H 1.07999 * 120.02524 * 359.97438 * 14 13 10 29 29 H 1.07994 * 120.01104 * 180.02562 * 15 14 13 30 30 H 1.08005 * 119.83586 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.68119 * 289.46476 * 20 19 18 32 32 H 1.09004 * 109.71634 * 168.92829 * 20 19 18 33 33 H 1.09002 * 109.69833 * 54.97484 * 21 20 19 34 34 H 1.09000 * 109.69839 * 175.53203 * 21 20 19 35 35 H 1.08998 * 109.48350 * 42.34763 * 22 17 16 36 36 H 1.09006 * 109.44442 * 282.44525 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 1 3.5866 -3.1757 -0.8425 12 7 3.6335 -3.2930 1.2546 13 6 5.5235 -2.6382 -0.1254 14 6 6.3064 -2.8127 0.9977 15 6 7.6843 -2.8151 0.8851 16 6 8.2763 -2.6413 -0.3510 17 6 7.4960 -2.4637 -1.4808 18 6 6.1161 -2.4632 -1.3716 19 8 5.3124 -2.2978 -2.4542 20 6 5.8940 -1.7555 -3.6407 21 6 7.1836 -2.5290 -3.9443 22 6 8.1795 -2.2681 -2.8114 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8746 -0.6799 -0.8911 26 1 3.9024 -4.2654 1.2523 27 1 4.0246 -2.8114 2.0503 28 1 5.8430 -2.9472 1.9639 29 1 8.2978 -2.9519 1.7633 30 1 9.3529 -2.6440 -0.4363 31 1 6.1256 -0.7015 -3.4874 32 1 5.1980 -1.8611 -4.4729 33 1 6.9668 -3.5955 -4.0046 34 1 7.6041 -2.1855 -4.8895 35 1 9.0154 -2.9624 -2.8963 36 1 8.5497 -1.2453 -2.8823 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261086644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:33 Heat of formation + Delta-G solvation = -21.341263 kcal Electronic energy + Delta-G solvation = -18173.040069 eV Core-core repulsion = 15428.716112 eV Total energy + Delta-G solvation = -2744.323957 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.59034 -37.63337 -35.73818 -33.64592 -32.24682 -30.52594 -29.40237 -28.74689 -25.63674 -24.39180 -23.48968 -21.70242 -20.11354 -19.23958 -17.60877 -16.77276 -16.30406 -15.76360 -15.16055 -14.84048 -14.27980 -14.10449 -13.86450 -13.71457 -13.39946 -13.08393 -12.95739 -12.41409 -12.16394 -11.65577 -11.50932 -11.29152 -10.95688 -10.90375 -10.64935 -10.44120 -10.28972 -9.95645 -9.60533 -9.01231 -8.40142 -8.37700 -7.93291 -7.80376 -5.85774 -3.79299 1.48322 1.63170 3.38769 3.45938 3.50406 3.51541 3.93496 4.58976 4.60739 4.66306 4.76370 4.93335 5.17412 5.19466 5.27374 5.39523 5.46335 5.51815 5.55530 5.61606 5.68660 5.73679 5.95755 5.98495 6.11528 6.32632 6.48359 6.55900 6.64805 6.87591 6.99514 7.24018 7.47099 7.70693 7.89549 8.04930 8.19826 8.77743 9.27393 9.77215 11.28323 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022734 B = 0.007643 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.317815 B = 3662.833588 C = 4199.239615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.062 3.938 3 Si 0.872 3.128 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.488 4.488 8 H 0.080 0.920 9 C 0.005 3.995 10 C 0.151 3.849 11 H 0.088 0.912 12 N -0.821 5.821 13 C -0.128 4.128 14 C -0.101 4.101 15 C -0.150 4.150 16 C -0.101 4.101 17 C -0.165 4.165 18 C 0.138 3.862 19 O -0.300 6.300 20 C 0.059 3.941 21 C -0.159 4.159 22 C -0.074 4.074 23 H 0.259 0.741 24 H 0.011 0.989 25 H 0.016 0.984 26 H 0.325 0.675 27 H 0.332 0.668 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.712 -5.318 -4.549 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.138 4.138 3 Si 0.700 3.300 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.526 4.526 8 H 0.098 0.902 9 C -0.032 4.032 10 C 0.039 3.961 11 H 0.106 0.894 12 N -0.348 5.348 13 C -0.131 4.131 14 C -0.119 4.119 15 C -0.168 4.168 16 C -0.119 4.119 17 C -0.166 4.166 18 C 0.092 3.908 19 O -0.213 6.213 20 C -0.016 4.016 21 C -0.197 4.197 22 C -0.111 4.111 23 H 0.069 0.931 24 H 0.029 0.971 25 H 0.034 0.966 26 H 0.136 0.864 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.575 -5.053 -4.775 18.900 hybrid contribution 1.806 0.952 0.058 2.043 sum 19.381 -4.100 -4.716 20.364 Atomic orbital electron populations 1.69908 1.06079 1.26301 1.52613 1.24981 0.94655 0.98614 0.95516 0.86911 0.80364 0.84507 0.78230 1.20612 1.21592 1.19385 1.21059 0.88841 0.94514 1.48203 0.90188 1.19540 0.97708 0.89943 0.96031 1.20368 0.84515 0.98760 0.92463 0.89425 1.58779 1.67250 1.04916 1.03857 1.21005 1.00119 1.01773 0.90186 1.20812 0.93431 0.99920 0.97766 1.20901 0.94721 1.03950 0.97244 1.20734 0.98899 1.00387 0.91895 1.19789 0.92510 1.08081 0.96242 1.18534 0.88353 0.96968 0.86965 1.86130 1.36889 1.78744 1.19526 1.22952 0.95313 0.96911 0.86447 1.22242 0.96552 1.01922 0.98990 1.20445 0.97664 1.02144 0.90896 0.93102 0.97079 0.96555 0.86404 0.85387 0.85765 0.86365 0.86482 0.91964 0.87468 0.90533 0.90053 0.90466 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.02 13.96 55.43 0.77 -28.24 16 2 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 3 Si 0.87 22.66 27.47 -169.99 -4.67 17.99 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.27 -6.80 6.54 56.52 0.37 -6.43 16 7 C -0.49 -14.42 9.39 -34.44 -0.32 -14.75 16 8 H 0.08 2.58 7.99 -52.49 -0.42 2.16 16 9 C 0.01 0.13 3.67 -27.88 -0.10 0.03 16 10 C 0.15 3.17 2.54 -68.86 -0.17 2.99 16 11 H 0.09 1.99 7.78 -51.93 -0.40 1.58 16 12 N -0.82 -15.64 8.42 -5.65 -0.05 -15.69 16 13 C -0.13 -2.32 5.10 -104.39 -0.53 -2.85 16 14 C -0.10 -1.56 9.24 -39.66 -0.37 -1.93 16 15 C -0.15 -2.02 10.05 -39.61 -0.40 -2.42 16 16 C -0.10 -1.33 9.67 -39.53 -0.38 -1.71 16 17 C -0.17 -2.38 5.75 -104.40 -0.60 -2.98 16 18 C 0.14 2.39 6.45 -39.20 -0.25 2.14 16 19 O -0.30 -5.31 9.18 -19.25 -0.18 -5.49 16 20 C 0.06 0.77 7.03 37.37 0.26 1.04 16 21 C -0.16 -1.66 6.19 -26.48 -0.16 -1.82 16 22 C -0.07 -0.81 5.87 -27.77 -0.16 -0.98 16 23 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 24 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 25 H 0.02 0.42 7.36 -51.93 -0.38 0.04 16 26 H 0.32 5.23 9.06 -39.29 -0.36 4.87 16 27 H 0.33 5.87 7.28 -39.29 -0.29 5.58 16 28 H 0.12 1.73 6.23 -52.49 -0.33 1.40 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 292.34 15.07 4.41 4.41 Total: -1.00 -33.62 292.34 -8.11 -41.73 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.10 Total: 6.77 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -3.29 Total: -21.47 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.73 Total: -43.94 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.18 Total: -5.49 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.62 -8.11 -41.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.388 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds