Wall clock time and date at job start Mon Mar 30 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99748 * 2 1 4 4 H 1.48498 * 109.47269 * 270.00219 * 3 2 1 5 5 H 1.48498 * 109.47088 * 30.00379 * 3 2 1 6 6 H 1.48500 * 109.46915 * 150.00403 * 3 2 1 7 7 C 1.37872 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00009 * 359.97438 * 7 2 1 9 9 C 1.50710 * 120.00253 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47376 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46993 * 54.99404 * 10 9 7 12 12 N 1.46906 * 109.47127 * 295.00251 * 10 9 7 13 13 C 1.50699 * 109.47254 * 175.00113 * 10 9 7 14 14 C 1.38012 * 119.88900 * 100.02073 * 13 10 9 15 15 C 1.38249 * 119.95610 * 179.97438 * 14 13 10 16 16 C 1.38152 * 119.97976 * 0.07835 * 15 14 13 17 17 C 1.38455 * 120.31930 * 0.02562 * 16 15 14 18 18 C 1.38418 * 119.83219 * 359.85608 * 17 16 15 19 19 O 1.35844 * 121.79800 * 180.26425 * 18 17 16 20 20 C 1.42832 * 117.86175 * 342.76358 * 19 18 17 21 21 C 1.53405 * 108.37921 * 49.18466 * 20 19 18 22 22 C 1.50860 * 118.75262 * 179.60601 * 17 16 15 23 23 H 0.96995 * 120.00363 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46735 * 59.99787 * 9 7 2 25 25 H 1.08998 * 109.46952 * 300.00043 * 9 7 2 26 26 H 1.00895 * 111.00226 * 176.04220 * 12 10 9 27 27 H 1.00895 * 110.99659 * 300.00096 * 12 10 9 28 28 H 1.07999 * 120.02524 * 359.97438 * 14 13 10 29 29 H 1.07994 * 120.01104 * 180.02562 * 15 14 13 30 30 H 1.08005 * 119.83586 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.68119 * 289.46476 * 20 19 18 32 32 H 1.09004 * 109.71634 * 168.92829 * 20 19 18 33 33 H 1.09002 * 109.69833 * 54.97484 * 21 20 19 34 34 H 1.09000 * 109.69839 * 175.53203 * 21 20 19 35 35 H 1.08998 * 109.48350 * 42.34763 * 22 17 16 36 36 H 1.09006 * 109.44442 * 282.44525 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 1 3.5866 -3.1757 -0.8425 12 7 3.6335 -3.2930 1.2546 13 6 5.5235 -2.6382 -0.1254 14 6 6.3064 -2.8127 0.9977 15 6 7.6843 -2.8151 0.8851 16 6 8.2763 -2.6413 -0.3510 17 6 7.4960 -2.4637 -1.4808 18 6 6.1161 -2.4632 -1.3716 19 8 5.3124 -2.2978 -2.4542 20 6 5.8940 -1.7555 -3.6407 21 6 7.1836 -2.5290 -3.9443 22 6 8.1795 -2.2681 -2.8114 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8746 -0.6799 -0.8911 26 1 3.9024 -4.2654 1.2523 27 1 4.0246 -2.8114 2.0503 28 1 5.8430 -2.9472 1.9639 29 1 8.2978 -2.9519 1.7633 30 1 9.3529 -2.6440 -0.4363 31 1 6.1256 -0.7015 -3.4874 32 1 5.1980 -1.8611 -4.4729 33 1 6.9668 -3.5955 -4.0046 34 1 7.6041 -2.1855 -4.8895 35 1 9.0154 -2.9624 -2.8963 36 1 8.5497 -1.2453 -2.8823 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261086644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:33 Heat of formation + Delta-G solvation = -44.689632 kcal Electronic energy + Delta-G solvation = -18174.052530 eV Core-core repulsion = 15428.716112 eV Total energy + Delta-G solvation = -2745.336418 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71401 -38.85129 -37.14662 -34.95813 -34.25666 -31.65044 -30.72485 -30.60483 -26.65195 -26.12764 -24.51670 -23.35786 -21.39622 -20.53915 -18.98922 -18.62070 -17.61662 -16.89532 -16.75650 -16.25269 -15.88424 -15.27562 -15.05141 -14.96472 -14.66812 -14.60286 -14.21003 -14.11186 -13.38935 -13.34107 -12.92658 -12.69223 -12.43688 -12.28170 -11.87439 -11.79600 -11.75583 -11.59801 -11.35991 -11.24454 -10.72111 -9.59198 -9.40930 -9.00237 -8.21158 -6.20579 0.35999 0.49894 1.31619 1.33713 1.45588 2.38122 2.44667 2.81429 3.11983 3.68155 3.74275 3.83456 3.88606 3.95299 4.12488 4.29121 4.39071 4.46023 4.49059 4.56038 4.68230 4.73088 4.84081 4.92298 5.05469 5.08610 5.17278 5.17724 5.33613 5.48262 5.55532 5.64125 5.72155 5.93660 6.35299 6.48585 6.62594 6.79100 6.87107 7.39826 8.96390 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022734 B = 0.007643 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.317815 B = 3662.833588 C = 4199.239615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.256 1.256 7 C -0.495 4.495 8 H 0.035 0.965 9 C 0.016 3.984 10 C 0.164 3.836 11 H 0.056 0.944 12 N -0.833 5.833 13 C -0.160 4.160 14 C -0.106 4.106 15 C -0.148 4.148 16 C -0.094 4.094 17 C -0.169 4.169 18 C 0.112 3.888 19 O -0.336 6.336 20 C 0.045 3.955 21 C -0.151 4.151 22 C -0.075 4.075 23 H 0.263 0.737 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.341 0.659 27 H 0.341 0.659 28 H 0.134 0.866 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.061 0.939 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.648 -4.632 -4.650 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.195 4.195 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.533 4.533 8 H 0.054 0.946 9 C -0.021 4.021 10 C 0.052 3.948 11 H 0.074 0.926 12 N -0.363 5.363 13 C -0.163 4.163 14 C -0.125 4.125 15 C -0.166 4.166 16 C -0.112 4.112 17 C -0.170 4.170 18 C 0.067 3.933 19 O -0.251 6.251 20 C -0.030 4.030 21 C -0.188 4.188 22 C -0.111 4.111 23 H 0.072 0.928 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.155 0.845 27 H 0.156 0.844 28 H 0.151 0.849 29 H 0.169 0.831 30 H 0.172 0.828 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 21.533 -4.387 -4.877 22.510 hybrid contribution 0.572 0.641 0.071 0.862 sum 22.105 -3.746 -4.806 22.929 Atomic orbital electron populations 1.70068 1.08006 1.27606 1.53996 1.25909 0.95568 1.02909 0.95107 0.85756 0.79278 0.79219 0.78912 1.19460 1.20728 1.17981 1.21272 0.91295 0.92946 1.47784 0.94624 1.19355 0.94489 0.92999 0.95289 1.19823 0.87132 0.95733 0.92092 0.92599 1.58656 1.67991 1.06107 1.03570 1.20731 0.98016 1.05476 0.92036 1.21000 0.94551 0.99685 0.97228 1.21298 0.93924 1.02494 0.98840 1.21234 1.00706 0.98117 0.91117 1.20232 0.91393 1.06805 0.98611 1.18823 0.89834 0.98084 0.86600 1.86074 1.38777 1.79326 1.20919 1.23262 0.97165 0.97218 0.85332 1.22208 0.95025 1.01108 1.00450 1.20578 0.97984 1.03637 0.88925 0.92820 0.97171 0.97235 0.84550 0.84401 0.84865 0.83113 0.82771 0.92069 0.86580 0.91164 0.86852 0.87878 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.94 13.96 21.45 0.30 -62.64 16 2 C 0.00 0.02 5.47 84.65 0.46 0.48 16 3 Si 0.94 47.32 27.47 68.60 1.88 49.20 16 4 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.26 -12.17 6.54 99.48 0.65 -11.52 16 7 C -0.49 -30.54 9.39 25.60 0.24 -30.30 16 8 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 9 C 0.02 0.84 3.67 29.85 0.11 0.95 16 10 C 0.16 7.18 2.54 44.17 0.11 7.30 16 11 H 0.06 2.73 7.78 -2.39 -0.02 2.71 16 12 N -0.83 -32.74 8.42 -171.79 -1.45 -34.18 16 13 C -0.16 -5.81 5.10 -19.71 -0.10 -5.91 16 14 C -0.11 -3.13 9.24 22.22 0.21 -2.93 16 15 C -0.15 -3.45 10.05 22.25 0.22 -3.23 16 16 C -0.09 -2.08 9.67 22.30 0.22 -1.86 16 17 C -0.17 -4.43 5.75 -19.72 -0.11 -4.55 16 18 C 0.11 3.86 6.45 22.52 0.15 4.00 16 19 O -0.34 -12.23 9.18 -91.80 -0.84 -13.07 16 20 C 0.04 1.14 7.03 72.12 0.51 1.65 16 21 C -0.15 -2.75 6.19 30.76 0.19 -2.56 16 22 C -0.07 -1.35 5.87 29.92 0.18 -1.17 16 23 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 24 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 25 H 0.01 0.50 7.36 -2.39 -0.02 0.48 16 26 H 0.34 11.27 9.06 -89.70 -0.81 10.45 16 27 H 0.34 12.16 7.28 -89.70 -0.65 11.50 16 28 H 0.13 3.52 6.23 -2.91 -0.02 3.50 16 29 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 30 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -76.22 292.34 1.84 -74.39 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.43 Total: 24.43 kcal Atomic # 6 Polarization: -40.49 SS G_CDS: 2.37 Total: -38.12 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -1.15 Total: -96.82 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.84 Total: -13.07 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.88 Total: 49.20 kcal Total: -76.22 1.84 -74.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.696 kcal (2) G-P(sol) polarization free energy of solvation -76.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds