Wall clock time and date at job start Mon Mar 30 2020 06:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00003 * 2 1 4 4 H 1.48499 * 109.47114 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47445 * 300.00206 * 3 2 1 6 6 H 1.48500 * 109.46856 * 60.00287 * 3 2 1 7 7 C 1.37877 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00000 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47103 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.45425 * 307.40902 * 10 9 7 12 12 N 1.48553 * 110.41561 * 69.82176 * 10 9 7 13 13 C 1.48566 * 104.22207 * 158.26456 * 12 10 9 14 14 C 1.54378 * 104.59094 * 320.51449 * 13 12 10 15 15 C 1.54261 * 105.06253 * 23.85691 * 14 13 12 16 16 H 1.08998 * 110.32403 * 241.00010 * 15 14 13 17 17 C 1.50696 * 110.32400 * 118.89084 * 15 14 13 18 18 C 1.38274 * 119.94301 * 121.45653 * 17 15 14 19 19 C 1.38141 * 120.05552 * 180.27916 * 18 17 15 20 20 C 1.38738 * 119.94395 * 359.44290 * 19 18 17 21 21 O 1.35897 * 120.05494 * 180.25974 * 20 19 18 22 22 C 1.38729 * 119.88657 * 0.52992 * 20 19 18 23 23 C 1.38149 * 119.94477 * 359.75178 * 22 20 19 24 24 H 0.96997 * 119.99804 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47017 * 59.99665 * 9 7 2 26 26 H 1.09003 * 109.46769 * 299.99984 * 9 7 2 27 27 H 1.00898 * 111.00018 * 277.81733 * 12 10 9 28 28 H 1.08999 * 110.40713 * 201.73722 * 13 12 10 29 29 H 1.08998 * 110.50919 * 79.34508 * 13 12 10 30 30 H 1.08996 * 110.32546 * 264.95786 * 14 13 12 31 31 H 1.09003 * 110.40674 * 142.79001 * 14 13 12 32 32 H 1.08002 * 119.96836 * 359.97438 * 18 17 15 33 33 H 1.07998 * 120.02987 * 179.70379 * 19 18 17 34 34 H 0.96705 * 113.99994 * 270.27208 * 21 20 19 35 35 H 1.07998 * 120.02610 * 179.76708 * 22 20 19 36 36 H 1.07996 * 119.96812 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9650 -3.5481 -0.8121 12 7 2.9460 -3.7445 1.3058 13 6 3.4302 -5.1474 1.3726 14 6 2.2791 -5.9850 0.7753 15 6 1.4996 -5.0079 -0.1287 16 1 0.4718 -4.9075 0.2200 17 6 1.5222 -5.4857 -1.5578 18 6 0.3349 -5.7406 -2.2191 19 6 0.3530 -6.1842 -3.5272 20 6 1.5635 -6.3629 -4.1812 21 8 1.5838 -6.7941 -5.4697 22 6 2.7533 -6.1059 -3.5156 23 6 2.7299 -5.6680 -2.2056 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5574 0.8880 27 1 3.7162 -3.0939 1.3448 28 1 3.6141 -5.4372 2.4072 29 1 4.3359 -5.2675 0.7782 30 1 1.6345 -6.3628 1.5688 31 1 2.6765 -6.8111 0.1856 32 1 -0.6072 -5.5975 -1.7109 33 1 -0.5744 -6.3878 -4.0418 34 1 1.6135 -7.7563 -5.5621 35 1 3.6969 -6.2478 -4.0213 36 1 3.6559 -5.4682 -1.6870 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:40 Heat of formation + Delta-G solvation = -27.831470 kcal Electronic energy + Delta-G solvation = -17718.890249 eV Core-core repulsion = 14974.284855 eV Total energy + Delta-G solvation = -2744.605394 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90999 -38.25353 -36.22681 -33.00957 -31.30367 -30.84977 -30.17841 -27.80842 -25.87233 -23.01863 -22.69223 -21.75695 -20.32777 -19.06879 -18.34339 -16.75265 -15.87687 -15.59139 -15.33115 -14.74542 -14.56813 -14.18543 -13.62892 -13.31454 -13.17132 -12.53061 -12.32729 -12.12509 -11.81041 -11.44698 -11.32760 -11.15998 -10.95995 -10.75784 -10.45871 -10.40232 -10.34866 -10.01902 -9.39599 -9.01894 -8.82842 -8.30857 -8.21453 -7.78914 -5.93999 -3.94818 1.38630 1.51289 3.34598 3.41911 3.44986 3.76904 4.27057 4.50396 4.76062 4.96017 5.09235 5.19626 5.27234 5.32672 5.44042 5.53656 5.59591 5.66517 5.83590 5.94229 6.00797 6.14807 6.17416 6.24034 6.34109 6.48789 6.54268 6.62240 6.85914 6.94949 7.00614 7.38470 7.68363 7.70711 7.85705 8.02524 8.16416 8.47221 9.09503 9.67664 11.17527 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.006362 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.880230 B = 4400.274152 C = 5141.438640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.050 0.950 9 C 0.036 3.964 10 C 0.086 3.914 11 H 0.039 0.961 12 N -0.650 5.650 13 C 0.031 3.969 14 C -0.114 4.114 15 C -0.058 4.058 16 H 0.087 0.913 17 C -0.062 4.062 18 C -0.097 4.097 19 C -0.143 4.143 20 C 0.088 3.912 21 O -0.501 6.501 22 C -0.144 4.144 23 C -0.099 4.099 24 H 0.259 0.741 25 H 0.019 0.981 26 H 0.027 0.973 27 H 0.338 0.662 28 H 0.071 0.929 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.383 0.617 35 H 0.123 0.877 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 -15.736 -4.007 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.069 0.931 9 C -0.001 4.001 10 C -0.023 4.023 11 H 0.057 0.943 12 N -0.280 5.280 13 C -0.099 4.099 14 C -0.152 4.152 15 C -0.077 4.077 16 H 0.105 0.895 17 C -0.062 4.062 18 C -0.116 4.116 19 C -0.161 4.161 20 C 0.044 3.956 21 O -0.310 6.310 22 C -0.162 4.162 23 C -0.117 4.117 24 H 0.068 0.932 25 H 0.037 0.963 26 H 0.045 0.955 27 H 0.154 0.846 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.238 0.762 35 H 0.141 0.859 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.342 -15.068 -3.687 15.869 hybrid contribution 1.223 0.546 -0.672 1.499 sum 4.565 -14.523 -4.359 15.835 Atomic orbital electron populations 1.69966 1.05982 1.26313 1.51230 1.24974 0.94800 0.99061 0.95545 0.86585 0.80047 0.84150 0.77474 1.19903 1.21194 1.21060 1.21153 0.92639 0.91035 1.49944 0.93133 1.19079 0.93352 0.90297 0.97411 1.22767 0.96188 0.94287 0.89042 0.94297 1.63695 1.28076 1.02293 1.33920 1.22907 0.95556 0.91545 0.99866 1.22376 0.97151 0.97174 0.98494 1.21082 1.01436 0.95460 0.89724 0.89500 1.19980 0.92832 0.97126 0.96275 1.21013 0.98210 0.98333 0.94001 1.21363 0.97498 1.02337 0.94903 1.18427 0.92485 1.01028 0.83699 1.84853 1.96523 1.26977 1.22667 1.21323 0.97664 1.02478 0.94767 1.20850 0.97957 0.98875 0.93981 0.93164 0.96313 0.95460 0.84613 0.91051 0.95372 0.91290 0.91884 0.85456 0.85714 0.76188 0.85866 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.51 -14.34 8.97 -34.44 -0.31 -14.65 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 9 C 0.04 0.93 4.56 -27.88 -0.13 0.80 16 10 C 0.09 1.77 2.51 -66.08 -0.17 1.60 16 11 H 0.04 0.82 6.88 -51.93 -0.36 0.46 16 12 N -0.65 -12.32 7.15 -102.75 -0.73 -13.05 16 13 C 0.03 0.46 7.47 -2.18 -0.02 0.45 16 14 C -0.11 -1.63 6.42 -25.35 -0.16 -1.79 16 15 C -0.06 -0.99 2.83 -90.39 -0.26 -1.24 16 16 H 0.09 1.56 7.64 -51.93 -0.40 1.16 16 17 C -0.06 -0.98 4.75 -104.60 -0.50 -1.48 16 18 C -0.10 -1.46 9.67 -39.60 -0.38 -1.85 16 19 C -0.14 -1.98 9.99 -39.43 -0.39 -2.37 16 20 C 0.09 1.21 6.70 -39.22 -0.26 0.95 16 21 O -0.50 -6.01 13.50 -19.42 -0.26 -6.27 16 22 C -0.14 -1.98 9.99 -39.43 -0.39 -2.38 16 23 C -0.10 -1.46 8.10 -39.61 -0.32 -1.78 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.34 6.35 8.91 -39.29 -0.35 6.00 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.80 7.32 -51.93 -0.38 0.42 16 32 H 0.13 1.76 7.96 -52.49 -0.42 1.35 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.38 2.52 9.06 45.56 0.41 2.94 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.12 1.71 7.73 -52.49 -0.41 1.30 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -32.14 300.61 -8.53 -40.68 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.40 Total: 5.84 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -3.39 Total: -22.20 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.00 Total: -39.51 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.26 Total: -6.27 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.14 -8.53 -40.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.846 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds