Wall clock time and date at job start Mon Mar 30 2020 06:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00003 * 2 1 4 4 H 1.48499 * 109.47114 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47445 * 300.00206 * 3 2 1 6 6 H 1.48500 * 109.46856 * 60.00287 * 3 2 1 7 7 C 1.37877 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00000 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47103 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.45425 * 307.40902 * 10 9 7 12 12 N 1.48553 * 110.41561 * 69.82176 * 10 9 7 13 13 C 1.48566 * 104.22207 * 158.26456 * 12 10 9 14 14 C 1.54378 * 104.59094 * 320.51449 * 13 12 10 15 15 C 1.54261 * 105.06253 * 23.85691 * 14 13 12 16 16 H 1.08998 * 110.32403 * 241.00010 * 15 14 13 17 17 C 1.50696 * 110.32400 * 118.89084 * 15 14 13 18 18 C 1.38274 * 119.94301 * 121.45653 * 17 15 14 19 19 C 1.38141 * 120.05552 * 180.27916 * 18 17 15 20 20 C 1.38738 * 119.94395 * 359.44290 * 19 18 17 21 21 O 1.35897 * 120.05494 * 180.25974 * 20 19 18 22 22 C 1.38729 * 119.88657 * 0.52992 * 20 19 18 23 23 C 1.38149 * 119.94477 * 359.75178 * 22 20 19 24 24 H 0.96997 * 119.99804 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47017 * 59.99665 * 9 7 2 26 26 H 1.09003 * 109.46769 * 299.99984 * 9 7 2 27 27 H 1.00898 * 111.00018 * 277.81733 * 12 10 9 28 28 H 1.08999 * 110.40713 * 201.73722 * 13 12 10 29 29 H 1.08998 * 110.50919 * 79.34508 * 13 12 10 30 30 H 1.08996 * 110.32546 * 264.95786 * 14 13 12 31 31 H 1.09003 * 110.40674 * 142.79001 * 14 13 12 32 32 H 1.08002 * 119.96836 * 359.97438 * 18 17 15 33 33 H 1.07998 * 120.02987 * 179.70379 * 19 18 17 34 34 H 0.96705 * 113.99994 * 270.27208 * 21 20 19 35 35 H 1.07998 * 120.02610 * 179.76708 * 22 20 19 36 36 H 1.07996 * 119.96812 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9650 -3.5481 -0.8121 12 7 2.9460 -3.7445 1.3058 13 6 3.4302 -5.1474 1.3726 14 6 2.2791 -5.9850 0.7753 15 6 1.4996 -5.0079 -0.1287 16 1 0.4718 -4.9075 0.2200 17 6 1.5222 -5.4857 -1.5578 18 6 0.3349 -5.7406 -2.2191 19 6 0.3530 -6.1842 -3.5272 20 6 1.5635 -6.3629 -4.1812 21 8 1.5838 -6.7941 -5.4697 22 6 2.7533 -6.1059 -3.5156 23 6 2.7299 -5.6680 -2.2056 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5574 0.8880 27 1 3.7162 -3.0939 1.3448 28 1 3.6141 -5.4372 2.4072 29 1 4.3359 -5.2675 0.7782 30 1 1.6345 -6.3628 1.5688 31 1 2.6765 -6.8111 0.1856 32 1 -0.6072 -5.5975 -1.7109 33 1 -0.5744 -6.3878 -4.0418 34 1 1.6135 -7.7563 -5.5621 35 1 3.6969 -6.2478 -4.0213 36 1 3.6559 -5.4682 -1.6870 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:40 Heat of formation + Delta-G solvation = -50.703273 kcal Electronic energy + Delta-G solvation = -17719.882044 eV Core-core repulsion = 14974.284855 eV Total energy + Delta-G solvation = -2745.597190 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.07383 -39.48752 -37.33513 -35.12470 -32.54379 -32.03897 -31.89194 -29.12550 -27.61645 -24.73035 -23.87035 -22.97577 -21.74925 -20.53011 -19.34403 -18.54750 -17.55361 -16.93626 -16.42944 -16.34173 -15.81735 -15.56852 -15.12885 -14.47812 -14.41775 -14.30016 -13.68609 -13.42191 -13.14854 -13.10498 -12.93352 -12.68855 -12.59270 -12.35394 -12.18343 -11.91520 -11.55699 -11.35891 -11.27311 -11.00068 -10.54895 -9.92813 -9.39514 -9.23492 -8.15847 -6.24874 0.28908 0.41255 1.39620 1.39894 1.52354 2.42307 2.68628 3.16610 3.30444 3.45434 3.74372 3.97596 4.03471 4.05470 4.11276 4.36144 4.42527 4.47575 4.55686 4.74565 4.85324 4.95295 4.99138 5.06149 5.10923 5.21286 5.23489 5.40156 5.45882 5.49554 5.57208 5.73922 5.84963 5.91795 6.14163 6.28719 6.59982 6.89536 6.89751 7.42547 8.96400 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.006362 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.880230 B = 4400.274152 C = 5141.438640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.045 3.955 10 C 0.095 3.905 11 H 0.034 0.966 12 N -0.670 5.670 13 C 0.034 3.966 14 C -0.106 4.106 15 C -0.053 4.053 16 H 0.066 0.934 17 C -0.082 4.082 18 C -0.112 4.112 19 C -0.148 4.148 20 C 0.092 3.908 21 O -0.508 6.508 22 C -0.147 4.147 23 C -0.103 4.103 24 H 0.261 0.739 25 H -0.013 1.013 26 H -0.007 1.007 27 H 0.336 0.664 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.409 0.591 35 H 0.145 0.855 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -16.713 -4.618 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.787 3.213 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.008 3.992 10 C -0.014 4.014 11 H 0.052 0.948 12 N -0.299 5.299 13 C -0.095 4.095 14 C -0.144 4.144 15 C -0.072 4.072 16 H 0.085 0.915 17 C -0.082 4.082 18 C -0.130 4.130 19 C -0.167 4.167 20 C 0.047 3.953 21 O -0.321 6.321 22 C -0.165 4.165 23 C -0.121 4.121 24 H 0.070 0.930 25 H 0.005 0.995 26 H 0.011 0.989 27 H 0.152 0.848 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.268 0.732 35 H 0.163 0.837 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.178 -16.087 -4.297 17.438 hybrid contribution 0.618 0.795 -0.540 1.143 sum 5.797 -15.292 -4.837 17.054 Atomic orbital electron populations 1.70110 1.07782 1.27393 1.52352 1.25926 0.95695 1.03163 0.95157 0.85451 0.79179 0.79188 0.77524 1.18491 1.20786 1.20541 1.21561 0.93117 0.92106 1.49306 0.92486 1.18875 0.93739 0.92480 0.94139 1.22431 0.95174 0.93954 0.89852 0.94806 1.63601 1.28705 1.04849 1.32761 1.23012 0.96242 0.88775 1.01467 1.22370 0.96732 0.96943 0.98314 1.20917 1.00207 0.94503 0.91586 0.91521 1.19951 0.93797 0.98683 0.95794 1.21145 0.98155 0.98889 0.94816 1.21566 0.98610 1.02017 0.94485 1.18527 0.92367 1.00268 0.84119 1.84787 1.96420 1.29435 1.21445 1.21564 0.98696 1.01859 0.94409 1.20954 0.97678 0.98882 0.94600 0.93025 0.99495 0.98904 0.84811 0.89216 0.93467 0.90532 0.89636 0.85478 0.84018 0.73227 0.83730 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.48 13.29 21.45 0.28 -58.19 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.96 45.38 29.54 68.60 2.03 47.40 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.52 -30.08 8.97 25.60 0.23 -29.85 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.05 2.45 4.56 29.85 0.14 2.58 16 10 C 0.10 3.97 2.51 45.06 0.11 4.08 16 11 H 0.03 1.44 6.88 -2.38 -0.02 1.42 16 12 N -0.67 -25.12 7.15 -478.99 -3.43 -28.55 16 13 C 0.03 0.94 7.47 86.45 0.65 1.58 16 14 C -0.11 -2.84 6.42 31.49 0.20 -2.64 16 15 C -0.05 -1.82 2.83 -10.65 -0.03 -1.85 16 16 H 0.07 2.51 7.64 -2.39 -0.02 2.50 16 17 C -0.08 -2.59 4.75 -19.85 -0.09 -2.68 16 18 C -0.11 -3.38 9.67 22.26 0.22 -3.16 16 19 C -0.15 -3.96 9.99 22.37 0.22 -3.73 16 20 C 0.09 2.34 6.70 22.51 0.15 2.49 16 21 O -0.51 -10.81 13.50 -92.39 -1.25 -12.06 16 22 C -0.15 -3.73 9.99 22.37 0.22 -3.51 16 23 C -0.10 -2.91 8.10 22.25 0.18 -2.73 16 24 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 25 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.34 12.48 8.91 -89.70 -0.80 11.68 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 1.94 7.32 -2.39 -0.02 1.92 16 32 H 0.13 3.68 7.96 -2.91 -0.02 3.66 16 33 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 34 H 0.41 4.11 9.06 -74.05 -0.67 3.44 16 35 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.13 3.37 7.73 -2.91 -0.02 3.34 16 Total: -1.00 -70.25 300.61 -0.09 -70.34 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.38 Total: 20.15 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 2.66 Total: -39.09 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -3.14 Total: -86.74 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -1.25 Total: -12.06 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.25 -0.09 -70.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.634 kcal (2) G-P(sol) polarization free energy of solvation -70.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds