Wall clock time and date at job start Mon Mar 30 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00003 * 2 1 4 4 H 1.48504 * 109.47395 * 269.99907 * 3 2 1 5 5 H 1.48500 * 109.47562 * 29.99888 * 3 2 1 6 6 H 1.48506 * 109.47355 * 149.99976 * 3 2 1 7 7 C 1.37870 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00331 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46988 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.90542 * 53.02513 * 10 9 7 12 12 N 1.47906 * 110.08175 * 291.81999 * 10 9 7 13 13 C 1.48526 * 105.81786 * 215.22763 * 12 10 9 14 14 C 1.54937 * 103.23139 * 39.20424 * 13 12 10 15 15 C 1.53987 * 109.91704 * 174.13055 * 10 9 7 16 16 H 1.09003 * 110.30661 * 239.79198 * 15 10 9 17 17 C 1.50703 * 110.30874 * 1.85849 * 15 10 9 18 18 C 1.38266 * 119.94305 * 250.40610 * 17 15 10 19 19 C 1.38146 * 120.05688 * 179.97438 * 18 17 15 20 20 C 1.38736 * 119.94051 * 359.97438 * 19 18 17 21 21 O 1.35902 * 120.05328 * 179.97438 * 20 19 18 22 22 C 1.38728 * 119.88869 * 359.97438 * 20 19 18 23 23 C 1.38145 * 119.94633 * 0.02562 * 22 20 19 24 24 H 0.97005 * 119.99603 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47341 * 60.00399 * 9 7 2 26 26 H 1.08999 * 109.47331 * 299.99929 * 9 7 2 27 27 H 1.00896 * 110.99825 * 94.70977 * 12 10 9 28 28 H 1.09001 * 110.66897 * 157.64408 * 13 12 10 29 29 H 1.09003 * 110.66891 * 280.60205 * 13 12 10 30 30 H 1.09003 * 110.72631 * 204.22800 * 14 13 12 31 31 H 1.09002 * 110.72318 * 80.94357 * 14 13 12 32 32 H 1.07998 * 119.97579 * 359.97438 * 18 17 15 33 33 H 1.08001 * 120.02921 * 180.25344 * 19 18 17 34 34 H 0.96698 * 113.99787 * 89.99948 * 21 20 19 35 35 H 1.08001 * 120.02537 * 180.02562 * 22 20 19 36 36 H 1.07998 * 119.97004 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 1 2.9542 -3.5433 0.8211 12 7 2.9687 -3.7132 -1.2872 13 6 3.1842 -5.1545 -1.5737 14 6 1.8581 -5.8099 -1.1127 15 6 1.4913 -4.9966 0.1499 16 1 1.8208 -5.5197 1.0477 17 6 0.0048 -4.7545 0.2025 18 6 -0.6840 -4.9453 1.3861 19 6 -2.0466 -4.7236 1.4372 20 6 -2.7238 -4.3086 0.2996 21 8 -4.0643 -4.0903 0.3471 22 6 -2.0301 -4.1170 -0.8864 23 6 -0.6676 -4.3401 -0.9323 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 3.8473 -3.2208 -1.2284 28 1 3.3424 -5.3154 -2.6401 29 1 4.0266 -5.5393 -0.9988 30 1 2.0127 -6.8598 -0.8638 31 1 1.0887 -5.7029 -1.8774 32 1 -0.1564 -5.2679 2.2715 33 1 -2.5835 -4.8687 2.3630 34 1 -4.3071 -3.1843 0.5819 35 1 -2.5550 -3.7936 -1.7732 36 1 -0.1273 -4.1914 -1.8555 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:43 Heat of formation + Delta-G solvation = -19.538510 kcal Electronic energy + Delta-G solvation = -18211.069442 eV Core-core repulsion = 15466.823658 eV Total energy + Delta-G solvation = -2744.245784 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78850 -38.07657 -35.89618 -32.95852 -31.19250 -30.50516 -30.13648 -27.40055 -25.92348 -22.99087 -22.31047 -21.69541 -20.39057 -18.65420 -17.96083 -16.69964 -15.73900 -15.55447 -15.01215 -14.76073 -14.35181 -14.15297 -13.47655 -12.97619 -12.82566 -12.63392 -12.16464 -11.89786 -11.48920 -11.40674 -11.22831 -11.03043 -10.96167 -10.57638 -10.53121 -10.40525 -10.01556 -9.92486 -9.38280 -8.94437 -8.42265 -8.18026 -7.79650 -7.68964 -5.90467 -3.90047 1.77240 1.92992 3.35538 3.41769 3.43963 4.10746 4.52102 4.73013 4.85018 5.07337 5.19227 5.40533 5.45309 5.46494 5.50931 5.62512 5.79828 5.85501 5.96372 6.08035 6.15673 6.24588 6.34019 6.40805 6.51490 6.57395 6.81154 6.94349 7.01693 7.17460 7.33239 7.46810 7.77678 7.86986 8.05500 8.07912 8.21059 8.53385 9.14307 9.71043 11.20186 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.009294 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.326712 B = 3012.112899 C = 4324.508955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.048 0.952 9 C 0.037 3.963 10 C 0.083 3.917 11 H 0.036 0.964 12 N -0.653 5.653 13 C 0.033 3.967 14 C -0.117 4.117 15 C -0.061 4.061 16 H 0.071 0.929 17 C -0.056 4.056 18 C -0.106 4.106 19 C -0.148 4.148 20 C 0.093 3.907 21 O -0.507 6.507 22 C -0.139 4.139 23 C -0.071 4.071 24 H 0.257 0.743 25 H 0.036 0.964 26 H 0.019 0.981 27 H 0.335 0.665 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.387 0.613 35 H 0.121 0.879 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 -10.634 0.184 10.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.000 4.000 10 C -0.026 4.026 11 H 0.054 0.946 12 N -0.282 5.282 13 C -0.096 4.096 14 C -0.155 4.155 15 C -0.080 4.080 16 H 0.089 0.911 17 C -0.057 4.057 18 C -0.124 4.124 19 C -0.167 4.167 20 C 0.049 3.951 21 O -0.317 6.317 22 C -0.158 4.158 23 C -0.089 4.089 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.150 0.850 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.242 0.758 35 H 0.139 0.861 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.294 -10.997 -0.400 11.080 hybrid contribution 1.220 1.472 0.890 2.109 sum -0.073 -9.525 0.489 9.538 Atomic orbital electron populations 1.69972 1.05842 1.26089 1.51414 1.24945 0.94772 0.98823 0.95794 0.86702 0.79802 0.84101 0.77955 1.20824 1.21481 1.20187 1.21192 0.92606 0.91243 1.49464 0.93340 1.19348 0.93171 0.89891 0.97542 1.22435 0.95988 0.95015 0.89149 0.94574 1.63033 1.24209 1.08102 1.32849 1.23024 0.95849 0.90594 1.00168 1.22632 0.97720 0.97805 0.97308 1.21146 0.91819 0.97108 0.97974 0.91063 1.19548 0.94544 0.98236 0.93337 1.20782 0.93468 1.00895 0.97259 1.21171 0.94550 1.03378 0.97575 1.18359 0.82562 1.01110 0.93096 1.84740 1.19658 1.34871 1.92480 1.21269 0.94582 1.01985 0.97914 1.20845 0.92961 0.96316 0.98790 0.93346 0.94541 0.96286 0.84971 0.90939 0.95269 0.91871 0.90434 0.86448 0.86326 0.75763 0.86106 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.10 8.93 -34.44 -0.31 -14.41 16 8 H 0.05 1.32 7.74 -52.48 -0.41 0.91 16 9 C 0.04 0.94 3.35 -27.88 -0.09 0.85 16 10 C 0.08 1.68 3.17 -66.64 -0.21 1.47 16 11 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 12 N -0.65 -12.13 6.97 -103.13 -0.72 -12.85 16 13 C 0.03 0.49 7.55 -1.90 -0.01 0.48 16 14 C -0.12 -1.71 6.45 -24.87 -0.16 -1.87 16 15 C -0.06 -1.04 3.21 -90.42 -0.29 -1.33 16 16 H 0.07 1.09 7.97 -51.93 -0.41 0.68 16 17 C -0.06 -1.02 3.22 -104.60 -0.34 -1.35 16 18 C -0.11 -1.80 9.54 -39.60 -0.38 -2.18 16 19 C -0.15 -2.49 9.99 -39.43 -0.39 -2.88 16 20 C 0.09 1.62 6.70 -39.22 -0.26 1.36 16 21 O -0.51 -7.90 13.50 -19.43 -0.26 -8.16 16 22 C -0.14 -2.52 9.99 -39.43 -0.39 -2.92 16 23 C -0.07 -1.33 6.41 -39.61 -0.25 -1.58 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.04 0.98 5.68 -51.93 -0.30 0.69 16 26 H 0.02 0.52 7.15 -51.93 -0.37 0.15 16 27 H 0.33 6.02 8.92 -39.29 -0.35 5.67 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.17 6.14 -51.93 -0.32 0.85 16 32 H 0.12 1.73 8.00 -52.49 -0.42 1.31 16 33 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.39 4.53 9.06 45.56 0.41 4.94 16 35 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.13 2.42 6.63 -52.49 -0.35 2.07 16 LS Contribution 292.88 15.07 4.41 4.41 Total: -1.00 -31.42 292.88 -8.23 -39.65 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -4.18 Total: 8.87 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -3.19 Total: -22.84 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.02 Total: -38.72 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.26 Total: -8.16 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.42 -8.23 -39.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.108 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds