Wall clock time and date at job start Mon Mar 30 2020 06:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00003 * 2 1 4 4 H 1.48504 * 109.47395 * 269.99907 * 3 2 1 5 5 H 1.48500 * 109.47562 * 29.99888 * 3 2 1 6 6 H 1.48506 * 109.47355 * 149.99976 * 3 2 1 7 7 C 1.37870 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00331 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46988 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.90542 * 53.02513 * 10 9 7 12 12 N 1.47906 * 110.08175 * 291.81999 * 10 9 7 13 13 C 1.48526 * 105.81786 * 215.22763 * 12 10 9 14 14 C 1.54937 * 103.23139 * 39.20424 * 13 12 10 15 15 C 1.53987 * 109.91704 * 174.13055 * 10 9 7 16 16 H 1.09003 * 110.30661 * 239.79198 * 15 10 9 17 17 C 1.50703 * 110.30874 * 1.85849 * 15 10 9 18 18 C 1.38266 * 119.94305 * 250.40610 * 17 15 10 19 19 C 1.38146 * 120.05688 * 179.97438 * 18 17 15 20 20 C 1.38736 * 119.94051 * 359.97438 * 19 18 17 21 21 O 1.35902 * 120.05328 * 179.97438 * 20 19 18 22 22 C 1.38728 * 119.88869 * 359.97438 * 20 19 18 23 23 C 1.38145 * 119.94633 * 0.02562 * 22 20 19 24 24 H 0.97005 * 119.99603 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47341 * 60.00399 * 9 7 2 26 26 H 1.08999 * 109.47331 * 299.99929 * 9 7 2 27 27 H 1.00896 * 110.99825 * 94.70977 * 12 10 9 28 28 H 1.09001 * 110.66897 * 157.64408 * 13 12 10 29 29 H 1.09003 * 110.66891 * 280.60205 * 13 12 10 30 30 H 1.09003 * 110.72631 * 204.22800 * 14 13 12 31 31 H 1.09002 * 110.72318 * 80.94357 * 14 13 12 32 32 H 1.07998 * 119.97579 * 359.97438 * 18 17 15 33 33 H 1.08001 * 120.02921 * 180.25344 * 19 18 17 34 34 H 0.96698 * 113.99787 * 89.99948 * 21 20 19 35 35 H 1.08001 * 120.02537 * 180.02562 * 22 20 19 36 36 H 1.07998 * 119.97004 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 1 2.9542 -3.5433 0.8211 12 7 2.9687 -3.7132 -1.2872 13 6 3.1842 -5.1545 -1.5737 14 6 1.8581 -5.8099 -1.1127 15 6 1.4913 -4.9966 0.1499 16 1 1.8208 -5.5197 1.0477 17 6 0.0048 -4.7545 0.2025 18 6 -0.6840 -4.9453 1.3861 19 6 -2.0466 -4.7236 1.4372 20 6 -2.7238 -4.3086 0.2996 21 8 -4.0643 -4.0903 0.3471 22 6 -2.0301 -4.1170 -0.8864 23 6 -0.6676 -4.3401 -0.9323 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 3.8473 -3.2208 -1.2284 28 1 3.3424 -5.3154 -2.6401 29 1 4.0266 -5.5393 -0.9988 30 1 2.0127 -6.8598 -0.8638 31 1 1.0887 -5.7029 -1.8774 32 1 -0.1564 -5.2679 2.2715 33 1 -2.5835 -4.8687 2.3630 34 1 -4.3071 -3.1843 0.5819 35 1 -2.5550 -3.7936 -1.7732 36 1 -0.1273 -4.1914 -1.8555 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:42 Heat of formation + Delta-G solvation = -41.719303 kcal Electronic energy + Delta-G solvation = -18212.031274 eV Core-core repulsion = 15466.823658 eV Total energy + Delta-G solvation = -2745.207615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15376 -39.41668 -37.20353 -35.02835 -32.55900 -31.87671 -31.83297 -28.84555 -27.62718 -24.77769 -23.71386 -23.06656 -21.74803 -20.14675 -19.26062 -18.54184 -17.39681 -17.01773 -16.38080 -16.29907 -16.03247 -15.47716 -14.94490 -14.54715 -14.30066 -14.07511 -13.65161 -13.51054 -13.02220 -12.90806 -12.75858 -12.67822 -12.54181 -12.28674 -12.22411 -11.76870 -11.60540 -11.25485 -11.15163 -10.89972 -10.46875 -9.71516 -9.17413 -9.13520 -8.07970 -6.14406 0.41877 0.55944 1.40147 1.41072 1.50343 2.45774 2.76818 3.24108 3.45468 3.54244 3.77403 3.90924 4.09046 4.15365 4.17535 4.44178 4.49618 4.55243 4.64988 4.77400 4.84768 5.01522 5.06805 5.12555 5.20536 5.25034 5.31657 5.50797 5.57547 5.60748 5.73807 5.80785 5.99703 6.03860 6.23799 6.42988 6.67815 6.87247 7.01242 7.50756 9.02379 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.009294 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.326712 B = 3012.112899 C = 4324.508955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.002 3.998 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.050 0.950 9 C 0.052 3.948 10 C 0.088 3.912 11 H 0.030 0.970 12 N -0.673 5.673 13 C 0.038 3.962 14 C -0.111 4.111 15 C -0.058 4.058 16 H 0.093 0.907 17 C -0.070 4.070 18 C -0.112 4.112 19 C -0.153 4.153 20 C 0.086 3.914 21 O -0.510 6.510 22 C -0.159 4.159 23 C -0.085 4.085 24 H 0.257 0.743 25 H 0.012 0.988 26 H -0.011 1.011 27 H 0.336 0.664 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.404 0.596 35 H 0.125 0.875 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 -11.503 0.690 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.069 0.931 9 C 0.015 3.985 10 C -0.022 4.022 11 H 0.049 0.951 12 N -0.303 5.303 13 C -0.091 4.091 14 C -0.149 4.149 15 C -0.077 4.077 16 H 0.111 0.889 17 C -0.070 4.070 18 C -0.130 4.130 19 C -0.172 4.172 20 C 0.042 3.958 21 O -0.322 6.322 22 C -0.178 4.178 23 C -0.103 4.103 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.007 0.993 27 H 0.151 0.849 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.262 0.738 35 H 0.143 0.857 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.225 -11.870 0.101 11.873 hybrid contribution 0.843 1.744 0.722 2.067 sum 0.618 -10.126 0.823 10.179 Atomic orbital electron populations 1.70107 1.07340 1.26853 1.52558 1.25775 0.95622 1.02460 0.95653 0.85665 0.78785 0.79782 0.78041 1.20418 1.21251 1.19120 1.21645 0.92970 0.92697 1.48704 0.93141 1.19084 0.93361 0.91194 0.94866 1.22178 0.95187 0.94922 0.89870 0.95145 1.62911 1.24498 1.11043 1.31849 1.23108 0.96601 0.87989 1.01423 1.22643 0.97268 0.99166 0.95827 1.21147 0.90651 0.95756 1.00165 0.88897 1.19756 0.95330 0.98464 0.93449 1.21133 0.93823 1.00305 0.97716 1.21491 0.94786 1.02659 0.98243 1.18498 0.83247 1.00962 0.93108 1.84688 1.18596 1.36371 1.92551 1.21462 0.94825 1.02739 0.98750 1.20857 0.93287 0.97209 0.98917 0.93419 0.96961 0.99302 0.84890 0.89529 0.93105 0.88745 0.91384 0.84061 0.83995 0.73832 0.85727 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.52 -29.37 8.93 25.60 0.23 -29.14 16 8 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 9 C 0.05 2.67 3.35 29.85 0.10 2.77 16 10 C 0.09 3.51 3.17 45.06 0.14 3.66 16 11 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 12 N -0.67 -24.42 6.97 -480.21 -3.35 -27.77 16 13 C 0.04 1.01 7.55 86.65 0.65 1.66 16 14 C -0.11 -2.99 6.45 31.80 0.21 -2.79 16 15 C -0.06 -1.88 3.21 -10.66 -0.03 -1.92 16 16 H 0.09 2.59 7.97 -2.39 -0.02 2.57 16 17 C -0.07 -2.49 3.22 -19.85 -0.06 -2.55 16 18 C -0.11 -3.69 9.54 22.25 0.21 -3.47 16 19 C -0.15 -5.00 9.99 22.37 0.22 -4.78 16 20 C 0.09 3.00 6.70 22.51 0.15 3.15 16 21 O -0.51 -15.51 13.50 -92.44 -1.25 -16.76 16 22 C -0.16 -5.93 9.99 22.36 0.22 -5.70 16 23 C -0.08 -3.24 6.41 22.25 0.14 -3.09 16 24 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 25 H 0.01 0.68 5.68 -2.39 -0.01 0.67 16 26 H -0.01 -0.63 7.15 -2.39 -0.02 -0.65 16 27 H 0.34 11.77 8.92 -89.70 -0.80 10.97 16 28 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.97 6.14 -2.39 -0.01 1.95 16 32 H 0.14 3.86 8.00 -2.91 -0.02 3.84 16 33 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.40 9.17 9.06 -74.06 -0.67 8.50 16 35 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.12 4.61 6.63 -2.91 -0.02 4.59 16 Total: -1.00 -67.60 292.88 -0.01 -67.61 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.37 Total: 27.59 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 2.65 Total: -41.63 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -3.06 Total: -83.80 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -1.25 Total: -16.76 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -67.60 -0.01 -67.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.888 kcal (2) G-P(sol) polarization free energy of solvation -67.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds