Wall clock time and date at job start Mon Mar 30 2020 06:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48491 * 109.47504 * 270.00173 * 3 2 1 5 5 H 1.48500 * 109.46975 * 30.00399 * 3 2 1 6 6 H 1.48506 * 109.46870 * 150.00210 * 3 2 1 7 7 C 1.37883 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99778 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99688 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46544 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.07039 * 304.49248 * 10 9 7 12 12 N 1.47901 * 109.91524 * 65.70184 * 10 9 7 13 13 C 1.48538 * 105.82160 * 144.67889 * 12 10 9 14 14 C 1.54930 * 103.22719 * 320.79048 * 13 12 10 15 15 C 1.53995 * 109.91447 * 183.28605 * 10 9 7 16 16 H 1.08998 * 110.30774 * 120.51006 * 15 10 9 17 17 C 1.50702 * 110.30872 * 358.34210 * 15 10 9 18 18 C 1.38261 * 119.94194 * 286.73239 * 17 15 10 19 19 C 1.38151 * 120.05298 * 179.72329 * 18 17 15 20 20 C 1.38733 * 119.94219 * 0.55670 * 19 18 17 21 21 O 1.35898 * 120.05562 * 179.75035 * 20 19 18 22 22 C 1.38733 * 119.88839 * 359.71724 * 20 19 18 23 23 C 1.38141 * 119.94302 * 0.02562 * 22 20 19 24 24 H 0.97008 * 119.99738 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47064 * 60.00375 * 9 7 2 26 26 H 1.08993 * 109.47275 * 299.99723 * 9 7 2 27 27 H 1.00903 * 110.99752 * 265.19303 * 12 10 9 28 28 H 1.09003 * 110.66456 * 79.22880 * 13 12 10 29 29 H 1.09001 * 110.66870 * 202.35683 * 13 12 10 30 30 H 1.08997 * 110.72907 * 155.76912 * 14 13 12 31 31 H 1.08997 * 110.72969 * 279.05765 * 14 13 12 32 32 H 1.07998 * 119.97440 * 0.02562 * 18 17 15 33 33 H 1.07997 * 120.02813 * 180.26937 * 19 18 17 34 34 H 0.96705 * 113.99505 * 269.97394 * 21 20 19 35 35 H 1.07997 * 120.02689 * 180.02562 * 22 20 19 36 36 H 1.08005 * 119.96831 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 1 3.5998 -3.1823 0.8431 12 7 3.6494 -3.3026 -1.2681 13 6 4.7770 -4.2131 -1.5933 14 6 6.0257 -3.3874 -1.1944 15 6 5.5591 -2.6494 0.0814 16 1 5.8858 -3.1880 0.9709 17 6 6.0939 -1.2405 0.0958 18 6 6.0781 -0.4845 -1.0617 19 6 6.5625 0.8093 -1.0497 20 6 7.0756 1.3457 0.1223 21 8 7.5574 2.6164 0.1355 22 6 7.0955 0.5830 1.2810 23 6 6.6051 -0.7083 1.2651 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8888 26 1 3.8745 -0.6801 -0.8911 27 1 2.7871 -3.8167 -1.1667 28 1 4.7156 -5.1274 -1.0031 29 1 4.7915 -4.4421 -2.6589 30 1 6.8678 -4.0435 -0.9742 31 1 6.2845 -2.6760 -1.9786 32 1 5.6823 -0.9040 -1.9748 33 1 6.5460 1.4009 -1.9530 34 1 8.4993 2.6820 -0.0734 35 1 7.4941 0.9985 2.1947 36 1 6.6200 -1.3023 2.1670 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087341.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:45 Heat of formation + Delta-G solvation = -40.572218 kcal Electronic energy + Delta-G solvation = -18338.890706 eV Core-core repulsion = 15593.732832 eV Total energy + Delta-G solvation = -2745.157874 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23615 -39.49110 -37.27762 -35.03010 -32.66701 -32.22939 -31.93351 -28.99922 -27.85941 -24.48778 -23.76015 -23.10328 -21.69639 -20.19058 -19.34424 -18.95498 -17.53109 -17.06061 -16.39961 -16.29839 -16.01212 -15.52523 -15.04887 -14.65766 -14.36104 -14.27995 -13.97798 -13.56663 -13.18823 -13.09833 -12.83227 -12.71595 -12.42712 -12.35020 -11.90467 -11.78710 -11.60398 -11.37154 -11.22337 -11.09232 -10.73888 -9.81744 -9.25867 -9.18723 -8.25849 -6.23101 0.33908 0.46613 1.29671 1.32476 1.45028 2.35082 2.72757 3.10411 3.32604 3.50932 3.72250 3.86255 4.03325 4.11214 4.13482 4.42187 4.43787 4.51422 4.59416 4.72814 4.81783 4.97827 5.03564 5.06940 5.09890 5.15144 5.31015 5.36059 5.46702 5.50578 5.53854 5.72171 5.76919 5.98356 6.17794 6.37487 6.59464 6.83521 6.89782 7.38642 8.91132 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.012030 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.570585 B = 2326.966765 C = 3793.483321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.009 3.991 3 Si 0.933 3.067 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.502 4.502 8 H 0.037 0.963 9 C 0.013 3.987 10 C 0.094 3.906 11 H 0.032 0.968 12 N -0.675 5.675 13 C 0.036 3.964 14 C -0.110 4.110 15 C -0.057 4.057 16 H 0.097 0.903 17 C -0.072 4.072 18 C -0.096 4.096 19 C -0.165 4.165 20 C 0.086 3.914 21 O -0.510 6.510 22 C -0.154 4.154 23 C -0.110 4.110 24 H 0.262 0.738 25 H 0.008 0.992 26 H 0.024 0.976 27 H 0.334 0.666 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.407 0.593 35 H 0.144 0.856 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.798 -3.778 -0.455 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.187 4.187 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.540 4.540 8 H 0.055 0.945 9 C -0.025 4.025 10 C -0.015 4.015 11 H 0.050 0.950 12 N -0.304 5.304 13 C -0.093 4.093 14 C -0.148 4.148 15 C -0.076 4.076 16 H 0.115 0.885 17 C -0.072 4.072 18 C -0.114 4.114 19 C -0.183 4.183 20 C 0.041 3.959 21 O -0.323 6.323 22 C -0.173 4.173 23 C -0.128 4.128 24 H 0.070 0.930 25 H 0.026 0.974 26 H 0.042 0.958 27 H 0.150 0.850 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.266 0.734 35 H 0.161 0.839 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 19.274 -2.974 -0.764 19.517 hybrid contribution -0.268 0.211 0.514 0.616 sum 19.007 -2.763 -0.250 19.208 Atomic orbital electron populations 1.70050 1.07838 1.27447 1.54208 1.25751 0.95319 1.02436 0.95195 0.85900 0.79491 0.79957 0.78773 1.19922 1.21484 1.17919 1.21482 0.92242 0.92630 1.47642 0.94503 1.19627 0.93380 0.93859 0.95592 1.22011 0.93306 0.95744 0.90488 0.94999 1.62906 1.05063 1.30270 1.32188 1.23136 0.90588 0.94142 1.01443 1.22662 0.97552 0.98685 0.95906 1.21142 0.93479 0.92412 1.00536 0.88452 1.19804 0.97384 0.96509 0.93541 1.21022 0.97640 0.93785 0.98981 1.21571 1.02171 0.95971 0.98627 1.18575 0.99707 0.84449 0.93127 1.84792 1.31488 1.23076 1.92976 1.21562 1.02773 0.94313 0.98617 1.21189 0.98095 0.95429 0.98042 0.92957 0.97370 0.95783 0.85043 0.93307 0.89497 0.88543 0.90797 0.85591 0.85020 0.73400 0.83861 0.83852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.94 13.96 21.45 0.30 -61.64 16 2 C 0.01 0.54 5.47 84.66 0.46 1.00 16 3 Si 0.93 48.49 27.47 68.60 1.88 50.37 16 4 H -0.27 -13.91 7.11 99.48 0.71 -13.21 16 5 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 6 H -0.26 -12.89 6.54 99.48 0.65 -12.24 16 7 C -0.50 -29.47 9.43 25.60 0.24 -29.22 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 9 C 0.01 0.62 2.48 29.85 0.07 0.70 16 10 C 0.09 3.62 3.21 45.06 0.14 3.76 16 11 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 12 N -0.67 -24.38 6.89 -480.20 -3.31 -27.69 16 13 C 0.04 0.92 7.55 86.65 0.65 1.57 16 14 C -0.11 -2.64 6.45 31.80 0.21 -2.44 16 15 C -0.06 -1.65 3.21 -10.66 -0.03 -1.68 16 16 H 0.10 2.40 8.00 -2.39 -0.02 2.38 16 17 C -0.07 -2.24 3.23 -19.85 -0.06 -2.31 16 18 C -0.10 -3.14 6.53 22.25 0.15 -2.99 16 19 C -0.16 -5.17 9.99 22.37 0.22 -4.95 16 20 C 0.09 2.55 6.70 22.51 0.15 2.70 16 21 O -0.51 -13.11 13.50 -92.41 -1.25 -14.35 16 22 C -0.15 -4.33 9.99 22.37 0.22 -4.10 16 23 C -0.11 -3.13 9.47 22.25 0.21 -2.92 16 24 H 0.26 16.04 8.31 -92.70 -0.77 15.27 16 25 H 0.01 0.41 6.29 -2.39 -0.02 0.39 16 26 H 0.02 1.18 5.16 -2.39 -0.01 1.17 16 27 H 0.33 12.42 8.92 -89.69 -0.80 11.62 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.84 5.95 -2.39 -0.01 1.83 16 32 H 0.13 4.15 6.60 -2.91 -0.02 4.13 16 33 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 34 H 0.41 5.59 9.06 -74.05 -0.67 4.92 16 35 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.14 3.36 8.02 -2.91 -0.02 3.34 16 Total: -1.00 -73.11 289.26 -0.17 -73.28 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.43 Total: 20.92 kcal Atomic # 6 Polarization: -43.52 SS G_CDS: 2.64 Total: -40.88 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -3.01 Total: -89.33 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -1.25 Total: -14.35 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.88 Total: 50.37 kcal Total: -73.11 -0.17 -73.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087341.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.703 kcal (2) G-P(sol) polarization free energy of solvation -73.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds