Wall clock time and date at job start Mon Mar 30 2020 06:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00053 * 2 1 4 4 H 1.48501 * 109.46868 * 269.99792 * 3 2 1 5 5 H 1.48502 * 109.46968 * 29.99513 * 3 2 1 6 6 H 1.48499 * 109.47264 * 150.00033 * 3 2 1 7 7 C 1.37879 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99800 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00332 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.46887 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47652 * 304.99763 * 10 9 7 12 12 N 1.46900 * 109.47524 * 65.00426 * 10 9 7 13 13 C 1.50710 * 109.46893 * 184.99922 * 10 9 7 14 14 C 1.38169 * 120.02933 * 265.27675 * 13 10 9 15 15 C 1.38242 * 120.05497 * 180.29595 * 14 13 10 16 16 C 1.38285 * 120.11180 * 359.68058 * 15 14 13 17 17 C 1.38127 * 120.05436 * 0.04260 * 16 15 14 18 18 C 1.38712 * 120.02479 * 84.99938 * 13 10 9 19 19 O 1.35899 * 120.05610 * 0.02562 * 18 13 10 20 20 C 1.42905 * 116.99463 * 185.30928 * 19 18 13 21 21 C 1.53000 * 117.49776 * 135.16305 * 20 19 18 22 22 C 1.52999 * 60.00079 * 107.48421 * 21 20 19 23 23 H 0.96997 * 120.00095 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46630 * 59.99765 * 9 7 2 25 25 H 1.08994 * 109.46613 * 300.00339 * 9 7 2 26 26 H 1.00905 * 110.99595 * 296.04458 * 12 10 9 27 27 H 1.00897 * 111.00260 * 59.99397 * 12 10 9 28 28 H 1.08002 * 119.97045 * 359.97438 * 14 13 10 29 29 H 1.07995 * 119.94354 * 179.70420 * 15 14 13 30 30 H 1.07997 * 119.97643 * 180.02562 * 16 15 14 31 31 H 1.08005 * 120.02555 * 179.97438 * 17 16 15 32 32 H 1.08995 * 115.56549 * 349.47319 * 20 19 18 33 33 H 1.08998 * 117.50280 * 214.97711 * 21 20 19 34 34 H 1.09005 * 117.49864 * 359.97438 * 21 20 19 35 35 H 1.08991 * 117.49889 * 252.50799 * 22 21 20 36 36 H 1.09002 * 117.49145 * 107.48922 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 1 3.5866 -3.1750 0.8443 12 7 3.6335 -3.2941 -1.2527 13 6 5.5235 -2.6382 0.1267 14 6 6.3111 -2.7036 -1.0066 15 6 7.6888 -2.7114 -0.8928 16 6 8.2823 -2.6471 0.3546 17 6 7.4993 -2.5758 1.4903 18 6 6.1163 -2.5683 1.3788 19 8 5.3438 -2.4987 2.4947 20 6 6.0188 -2.3116 3.7403 21 6 5.4395 -1.2794 4.7097 22 6 5.3000 -2.7732 5.0096 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 2.6297 -3.3633 -1.3293 27 1 4.0246 -2.8134 -2.0489 28 1 5.8500 -2.7540 -1.9820 29 1 8.3027 -2.7674 -1.7796 30 1 9.3588 -2.6529 0.4409 31 1 7.9633 -2.5260 2.4643 32 1 7.1030 -2.4192 3.7085 33 1 6.1425 -0.7078 5.3157 34 1 4.5437 -0.7427 4.3972 35 1 4.3123 -3.2194 4.8946 36 1 5.9113 -3.1844 5.8129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087764.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:27 Heat of formation + Delta-G solvation = 18.306315 kcal Electronic energy + Delta-G solvation = -17892.418949 eV Core-core repulsion = 15149.814240 eV Total energy + Delta-G solvation = -2742.604709 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.10127 -37.90402 -35.44911 -35.07332 -32.42373 -30.06342 -29.50339 -28.48548 -24.60436 -23.49753 -22.43046 -21.80704 -20.85063 -19.61806 -18.25820 -16.99370 -16.00567 -15.49559 -14.99860 -14.73862 -14.67771 -14.17872 -13.82198 -13.70559 -13.14907 -12.99610 -12.28722 -12.17573 -12.13082 -11.84152 -11.53774 -11.44718 -10.89005 -10.83657 -10.49796 -10.29422 -10.25440 -9.92898 -9.74044 -9.19696 -8.58588 -8.53861 -7.97464 -7.58674 -6.08126 -4.06466 1.63653 1.72637 3.24790 3.27720 3.35653 3.41839 3.76293 4.11798 4.42616 4.60722 4.90804 4.95387 5.04668 5.13711 5.24533 5.28708 5.36571 5.49810 5.59091 5.76195 5.82731 5.94339 6.00079 6.13832 6.14849 6.37877 6.57978 6.62946 6.74571 6.84661 7.09809 7.17538 7.31384 7.70876 7.76045 8.00479 8.25558 8.48172 8.95153 9.54719 11.04700 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.008411 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.529076 B = 3328.100186 C = 4218.774448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.074 0.926 9 C -0.033 4.033 10 C 0.144 3.856 11 H 0.085 0.915 12 N -0.840 5.840 13 C -0.085 4.085 14 C -0.073 4.073 15 C -0.160 4.160 16 C -0.097 4.097 17 C -0.213 4.213 18 C 0.132 3.868 19 O -0.269 6.269 20 C 0.000 4.000 21 C -0.185 4.185 22 C -0.172 4.172 23 H 0.263 0.737 24 H 0.021 0.979 25 H 0.009 0.991 26 H 0.352 0.648 27 H 0.326 0.674 28 H 0.130 0.870 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.722 -4.241 4.777 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.072 4.072 10 C 0.033 3.967 11 H 0.103 0.897 12 N -0.370 5.370 13 C -0.087 4.087 14 C -0.091 4.091 15 C -0.179 4.179 16 C -0.115 4.115 17 C -0.232 4.232 18 C 0.086 3.914 19 O -0.182 6.182 20 C -0.057 4.057 21 C -0.223 4.223 22 C -0.209 4.209 23 H 0.073 0.927 24 H 0.039 0.961 25 H 0.027 0.973 26 H 0.166 0.834 27 H 0.138 0.862 28 H 0.147 0.853 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.720 -4.781 5.088 17.200 hybrid contribution 0.098 1.984 -0.091 1.988 sum 15.818 -2.797 4.997 16.822 Atomic orbital electron populations 1.69908 1.06219 1.26886 1.50903 1.24981 0.94664 0.99062 0.94452 0.86819 0.80494 0.83775 0.78489 1.20376 1.21356 1.19029 1.21059 0.89105 0.94469 1.51150 0.90817 1.20237 0.97402 0.92860 0.96684 1.20109 0.87718 0.95661 0.93255 0.89659 1.59275 1.17574 1.56515 1.03591 1.19594 0.97300 1.02028 0.89745 1.20825 0.92878 0.97331 0.98082 1.20988 0.94847 1.04817 0.97215 1.20770 0.99009 0.99550 0.92159 1.21090 0.92644 1.10003 0.99462 1.18786 0.89400 0.96891 0.86317 1.86155 1.33507 1.86211 1.12333 1.23005 0.96027 1.05608 0.81015 1.23463 1.04396 0.92608 1.01792 1.23329 1.03213 0.97491 0.96866 0.92731 0.96069 0.97299 0.83427 0.86189 0.85254 0.86399 0.86468 0.85751 0.86093 0.88089 0.87413 0.87599 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 7 C -0.52 -14.65 9.10 -34.44 -0.31 -14.96 16 8 H 0.07 2.21 7.39 -52.49 -0.39 1.82 16 9 C -0.03 -0.81 3.67 -27.89 -0.10 -0.91 16 10 C 0.14 3.05 2.71 -68.86 -0.19 2.86 16 11 H 0.09 1.96 7.69 -51.93 -0.40 1.56 16 12 N -0.84 -16.12 8.80 -5.65 -0.05 -16.17 16 13 C -0.09 -1.61 5.07 -104.47 -0.53 -2.14 16 14 C -0.07 -1.19 9.27 -39.61 -0.37 -1.56 16 15 C -0.16 -2.25 10.04 -39.56 -0.40 -2.65 16 16 C -0.10 -1.30 10.04 -39.61 -0.40 -1.69 16 17 C -0.21 -3.13 9.19 -39.43 -0.36 -3.50 16 18 C 0.13 2.35 6.65 -39.22 -0.26 2.09 16 19 O -0.27 -4.91 9.53 -19.42 -0.19 -5.10 16 20 C 0.00 0.00 6.21 -26.73 -0.17 -0.16 16 21 C -0.19 -2.34 10.48 -26.73 -0.28 -2.62 16 22 C -0.17 -2.02 10.48 -26.73 -0.28 -2.30 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 25 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 26 H 0.35 7.09 7.90 -39.29 -0.31 6.78 16 27 H 0.33 5.75 7.21 -39.29 -0.28 5.47 16 28 H 0.13 1.95 6.29 -52.49 -0.33 1.62 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.49 5.52 -52.48 -0.29 1.20 16 32 H 0.12 1.37 5.33 -51.93 -0.28 1.09 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 297.97 15.07 4.49 4.49 Total: -1.00 -31.50 297.97 -8.13 -39.63 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -4.75 Total: 12.15 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -3.74 Total: -25.61 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.72 Total: -43.04 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.19 Total: -5.10 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.50 -8.13 -39.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087764.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.939 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds