Wall clock time and date at job start Mon Mar 30 2020 06:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00053 * 2 1 4 4 H 1.48501 * 109.46868 * 269.99792 * 3 2 1 5 5 H 1.48502 * 109.46968 * 29.99513 * 3 2 1 6 6 H 1.48499 * 109.47264 * 150.00033 * 3 2 1 7 7 C 1.37879 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99800 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00332 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.46887 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47652 * 304.99763 * 10 9 7 12 12 N 1.46900 * 109.47524 * 65.00426 * 10 9 7 13 13 C 1.50710 * 109.46893 * 184.99922 * 10 9 7 14 14 C 1.38169 * 120.02933 * 265.27675 * 13 10 9 15 15 C 1.38242 * 120.05497 * 180.29595 * 14 13 10 16 16 C 1.38285 * 120.11180 * 359.68058 * 15 14 13 17 17 C 1.38127 * 120.05436 * 0.04260 * 16 15 14 18 18 C 1.38712 * 120.02479 * 84.99938 * 13 10 9 19 19 O 1.35899 * 120.05610 * 0.02562 * 18 13 10 20 20 C 1.42905 * 116.99463 * 185.30928 * 19 18 13 21 21 C 1.53000 * 117.49776 * 135.16305 * 20 19 18 22 22 C 1.52999 * 60.00079 * 107.48421 * 21 20 19 23 23 H 0.96997 * 120.00095 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46630 * 59.99765 * 9 7 2 25 25 H 1.08994 * 109.46613 * 300.00339 * 9 7 2 26 26 H 1.00905 * 110.99595 * 296.04458 * 12 10 9 27 27 H 1.00897 * 111.00260 * 59.99397 * 12 10 9 28 28 H 1.08002 * 119.97045 * 359.97438 * 14 13 10 29 29 H 1.07995 * 119.94354 * 179.70420 * 15 14 13 30 30 H 1.07997 * 119.97643 * 180.02562 * 16 15 14 31 31 H 1.08005 * 120.02555 * 179.97438 * 17 16 15 32 32 H 1.08995 * 115.56549 * 349.47319 * 20 19 18 33 33 H 1.08998 * 117.50280 * 214.97711 * 21 20 19 34 34 H 1.09005 * 117.49864 * 359.97438 * 21 20 19 35 35 H 1.08991 * 117.49889 * 252.50799 * 22 21 20 36 36 H 1.09002 * 117.49145 * 107.48922 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 1 3.5866 -3.1750 0.8443 12 7 3.6335 -3.2941 -1.2527 13 6 5.5235 -2.6382 0.1267 14 6 6.3111 -2.7036 -1.0066 15 6 7.6888 -2.7114 -0.8928 16 6 8.2823 -2.6471 0.3546 17 6 7.4993 -2.5758 1.4903 18 6 6.1163 -2.5683 1.3788 19 8 5.3438 -2.4987 2.4947 20 6 6.0188 -2.3116 3.7403 21 6 5.4395 -1.2794 4.7097 22 6 5.3000 -2.7732 5.0096 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 2.6297 -3.3633 -1.3293 27 1 4.0246 -2.8134 -2.0489 28 1 5.8500 -2.7540 -1.9820 29 1 8.3027 -2.7674 -1.7796 30 1 9.3588 -2.6529 0.4409 31 1 7.9633 -2.5260 2.4643 32 1 7.1030 -2.4192 3.7085 33 1 6.1425 -0.7078 5.3157 34 1 4.5437 -0.7427 4.3972 35 1 4.3123 -3.2194 4.8946 36 1 5.9113 -3.1844 5.8129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087764.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:26 Heat of formation + Delta-G solvation = -2.605573 kcal Electronic energy + Delta-G solvation = -17893.325756 eV Core-core repulsion = 15149.814240 eV Total energy + Delta-G solvation = -2743.511517 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.30308 -39.08953 -37.06401 -36.14993 -34.57395 -31.36503 -30.79326 -30.36669 -26.26773 -24.70995 -23.44402 -23.33451 -22.07924 -21.11380 -19.58427 -18.94363 -17.38900 -16.73856 -16.45807 -16.06232 -16.03696 -15.72238 -15.17393 -14.99280 -14.80072 -14.60463 -14.15034 -13.78327 -13.27980 -13.21269 -13.02321 -12.58651 -12.49398 -12.35382 -12.11885 -11.91128 -11.74010 -11.43179 -11.16903 -10.97996 -10.83633 -9.80036 -9.48629 -8.91477 -8.35330 -6.38692 0.46350 0.55146 1.25992 1.28734 1.41088 2.17273 2.28746 2.73938 2.97039 2.99053 3.59806 3.72945 3.94111 3.99914 4.03701 4.09599 4.23083 4.27930 4.47825 4.64984 4.68571 4.71893 4.74960 4.89864 4.94886 5.07870 5.11210 5.16921 5.29957 5.47731 5.56554 5.63244 5.66824 5.98115 6.17524 6.34698 6.57299 6.67039 6.68556 7.25826 8.80590 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.008411 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.529076 B = 3328.100186 C = 4218.774448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.943 3.057 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.524 4.524 8 H 0.040 0.960 9 C -0.020 4.020 10 C 0.157 3.843 11 H 0.052 0.948 12 N -0.829 5.829 13 C -0.124 4.124 14 C -0.082 4.082 15 C -0.158 4.158 16 C -0.085 4.085 17 C -0.212 4.212 18 C 0.109 3.891 19 O -0.308 6.308 20 C -0.021 4.021 21 C -0.189 4.189 22 C -0.161 4.161 23 H 0.267 0.733 24 H 0.005 0.995 25 H 0.014 0.986 26 H 0.343 0.657 27 H 0.338 0.662 28 H 0.135 0.865 29 H 0.152 0.848 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.133 0.867 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.600 -3.669 4.920 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.767 3.233 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.562 4.562 8 H 0.059 0.941 9 C -0.059 4.059 10 C 0.045 3.955 11 H 0.071 0.929 12 N -0.358 5.358 13 C -0.125 4.125 14 C -0.100 4.100 15 C -0.176 4.176 16 C -0.103 4.103 17 C -0.230 4.230 18 C 0.064 3.936 19 O -0.221 6.221 20 C -0.077 4.077 21 C -0.226 4.226 22 C -0.198 4.198 23 H 0.076 0.924 24 H 0.023 0.977 25 H 0.032 0.968 26 H 0.155 0.845 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.169 0.831 30 H 0.176 0.824 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.151 0.849 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 19.613 -4.219 5.221 20.730 hybrid contribution -1.100 1.714 -0.107 2.039 sum 18.513 -2.506 5.115 19.369 Atomic orbital electron populations 1.70042 1.07915 1.28059 1.52345 1.25861 0.95507 1.02965 0.94174 0.85762 0.79123 0.79136 0.79241 1.18812 1.20609 1.18599 1.21314 0.91194 0.93304 1.50429 0.94145 1.20090 0.94662 0.95358 0.95788 1.19745 0.90149 0.92886 0.92742 0.92934 1.59246 1.16852 1.56212 1.03512 1.19486 0.95497 1.05874 0.91642 1.21007 0.94198 0.97391 0.97417 1.21384 0.93891 1.03277 0.99029 1.21302 1.01000 0.96791 0.91223 1.21442 0.91211 1.08861 1.01528 1.19078 0.90898 0.97756 0.85878 1.86101 1.35563 1.86592 1.13875 1.23469 0.97482 1.06807 0.79918 1.23513 1.03881 0.93166 1.02070 1.23433 1.02688 0.96806 0.96899 0.92441 0.97691 0.96816 0.84457 0.84924 0.84759 0.83078 0.82351 0.82951 0.83229 0.84859 0.90578 0.89625 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.71 13.96 21.45 0.30 -59.41 16 2 C 0.01 0.75 5.47 84.66 0.46 1.21 16 3 Si 0.94 46.22 27.47 68.60 1.88 48.10 16 4 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.26 -12.55 6.54 99.48 0.65 -11.90 16 7 C -0.52 -30.88 9.10 25.60 0.23 -30.65 16 8 H 0.04 2.58 7.39 -2.91 -0.02 2.56 16 9 C -0.02 -1.01 3.67 29.85 0.11 -0.90 16 10 C 0.16 6.92 2.71 44.17 0.12 7.04 16 11 H 0.05 2.61 7.69 -2.39 -0.02 2.59 16 12 N -0.83 -32.88 8.80 -171.79 -1.51 -34.39 16 13 C -0.12 -4.69 5.07 -19.76 -0.10 -4.79 16 14 C -0.08 -2.55 9.27 22.25 0.21 -2.34 16 15 C -0.16 -3.82 10.04 22.28 0.22 -3.60 16 16 C -0.09 -1.90 10.04 22.25 0.22 -1.67 16 17 C -0.21 -5.57 9.19 22.37 0.21 -5.36 16 18 C 0.11 3.84 6.65 22.51 0.15 3.99 16 19 O -0.31 -11.48 9.53 -92.41 -0.88 -12.36 16 20 C -0.02 -0.56 6.21 30.59 0.19 -0.37 16 21 C -0.19 -4.63 10.48 30.59 0.32 -4.31 16 22 C -0.16 -3.63 10.48 30.59 0.32 -3.31 16 23 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 24 H 0.00 0.25 7.20 -2.39 -0.02 0.24 16 25 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 26 H 0.34 14.59 7.90 -89.69 -0.71 13.88 16 27 H 0.34 11.99 7.21 -89.70 -0.65 11.35 16 28 H 0.13 3.87 6.29 -2.91 -0.02 3.85 16 29 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.15 2.99 5.52 -2.91 -0.02 2.98 16 32 H 0.15 2.92 5.33 -2.39 -0.01 2.91 16 33 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -71.60 297.97 2.15 -69.45 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.31 Total: 33.66 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 2.66 Total: -45.05 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -1.21 Total: -93.80 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.88 Total: -12.36 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.88 Total: 48.10 kcal Total: -71.60 2.15 -69.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087764.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.848 kcal (2) G-P(sol) polarization free energy of solvation -71.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds