Wall clock time and date at job start Mon Mar 30 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99824 * 2 1 4 4 H 1.48504 * 109.46998 * 239.72000 * 3 2 1 5 5 H 1.48497 * 109.47565 * 359.71989 * 3 2 1 6 6 H 1.48500 * 109.47440 * 119.72585 * 3 2 1 7 7 C 1.37881 * 119.99973 * 179.72244 * 2 1 3 8 8 H 1.07995 * 119.99432 * 180.27637 * 7 2 1 9 9 C 1.50696 * 119.99809 * 0.27201 * 7 2 1 10 10 C 1.52998 * 109.46897 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47022 * 55.00507 * 10 9 7 12 12 N 1.46902 * 109.47115 * 295.00302 * 10 9 7 13 13 C 1.50705 * 109.46934 * 175.00247 * 10 9 7 14 14 C 1.38170 * 120.02717 * 99.72990 * 13 10 9 15 15 C 1.38239 * 120.05408 * 179.77129 * 14 13 10 16 16 C 1.38285 * 120.11472 * 0.49818 * 15 14 13 17 17 C 1.38126 * 120.05128 * 359.75300 * 16 15 14 18 18 C 1.38709 * 120.02621 * 279.99930 * 13 10 9 19 19 O 1.35894 * 120.05955 * 0.02562 * 18 13 10 20 20 C 1.42900 * 117.00400 * 174.38935 * 19 18 13 21 21 C 1.53001 * 117.50006 * 224.83211 * 20 19 18 22 22 C 1.52998 * 117.50114 * 156.20562 * 20 19 18 23 23 H 0.97000 * 120.00202 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47667 * 300.00260 * 9 7 2 25 25 H 1.09008 * 109.46703 * 60.00322 * 9 7 2 26 26 H 1.00899 * 111.00112 * 299.99769 * 12 10 9 27 27 H 1.00891 * 110.99740 * 63.95975 * 12 10 9 28 28 H 1.08000 * 119.96639 * 0.02562 * 14 13 10 29 29 H 1.08004 * 119.94514 * 180.25454 * 15 14 13 30 30 H 1.07995 * 119.97578 * 179.77047 * 16 15 14 31 31 H 1.08004 * 120.02716 * 180.02562 * 17 16 15 32 32 H 1.09009 * 115.54554 * 10.53271 * 20 19 18 33 33 H 1.09000 * 117.49886 * 359.97438 * 21 20 19 34 34 H 1.08999 * 117.49950 * 145.01460 * 21 20 19 35 35 H 1.08998 * 117.49885 * 214.97695 * 22 20 19 36 36 H 1.09000 * 117.49656 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1080 1.6934 -1.2091 5 1 1.2842 2.7465 -0.0068 6 1 3.0979 1.6994 1.2158 7 6 2.0046 -1.1941 0.0058 8 1 3.0845 -1.1940 0.0103 9 6 1.2511 -2.4991 0.0059 10 6 2.2453 -3.6620 0.0122 11 1 2.9262 -3.5533 0.8564 12 7 3.0131 -3.6566 -1.2401 13 6 1.4954 -4.9633 0.1361 14 6 1.2525 -5.7310 -0.9867 15 6 0.5689 -6.9271 -0.8730 16 6 0.1173 -7.3534 0.3626 17 6 0.3530 -6.5871 1.4873 18 6 1.0435 -5.3886 1.3767 19 8 1.2758 -4.6325 2.4816 20 6 0.6770 -5.0683 3.7038 21 6 -0.0061 -4.0102 4.5724 22 6 1.3293 -4.6145 5.0112 23 1 -0.4850 -0.8400 0.0004 24 1 0.6207 -2.5547 0.8934 25 1 0.6281 -2.5590 -0.8866 26 1 2.4039 -3.7562 -2.0383 27 1 3.5751 -2.8221 -1.3160 28 1 1.6008 -5.3983 -1.9533 29 1 0.3836 -7.5278 -1.7513 30 1 -0.4198 -8.2864 0.4482 31 1 0.0005 -6.9206 2.4522 32 1 0.2341 -6.0641 3.6813 33 1 0.0015 -2.9815 4.2119 34 1 -0.8988 -4.3096 5.1216 35 1 1.3151 -5.3115 5.8491 36 1 2.2149 -3.9831 4.9392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:30 Heat of formation + Delta-G solvation = 11.338414 kcal Electronic energy + Delta-G solvation = -17891.925397 eV Core-core repulsion = 15149.018537 eV Total energy + Delta-G solvation = -2742.906860 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06663 -37.86585 -35.48256 -35.03509 -32.63820 -29.97875 -29.48279 -27.56828 -24.35856 -23.46520 -22.39631 -22.10244 -20.89721 -19.79318 -18.19073 -16.90186 -16.06285 -15.50893 -14.96497 -14.75345 -14.54290 -13.83544 -13.75301 -13.71187 -13.10485 -13.04025 -12.44473 -12.08729 -11.97509 -11.65251 -11.49811 -11.21574 -10.80806 -10.62352 -10.58266 -10.28067 -10.19834 -10.07673 -9.88970 -8.64355 -8.47453 -8.34608 -7.96389 -7.54405 -6.37104 -4.06764 1.67086 1.76035 3.28814 3.42461 3.44433 3.62853 3.80223 4.15358 4.53255 4.64073 4.94627 4.98843 5.08295 5.16937 5.31778 5.34287 5.42539 5.52404 5.61989 5.80239 5.85038 5.97918 6.03663 6.17603 6.19599 6.41824 6.62475 6.69071 6.78410 6.89842 7.13490 7.33013 7.42198 7.77548 8.01213 8.09997 8.29326 8.44044 8.86182 9.66030 11.03053 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.007670 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.376420 B = 3649.889076 C = 4721.543396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 1.068 2.932 4 H -0.288 1.288 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.601 4.601 8 H 0.049 0.951 9 C -0.008 4.008 10 C 0.142 3.858 11 H 0.080 0.920 12 N -0.840 5.840 13 C -0.086 4.086 14 C -0.073 4.073 15 C -0.161 4.161 16 C -0.097 4.097 17 C -0.214 4.214 18 C 0.132 3.868 19 O -0.269 6.269 20 C 0.000 4.000 21 C -0.184 4.184 22 C -0.173 4.173 23 H 0.268 0.732 24 H 0.014 0.986 25 H 0.003 0.997 26 H 0.327 0.673 27 H 0.348 0.652 28 H 0.130 0.870 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.411 -12.876 4.694 13.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.896 3.104 4 H -0.214 1.214 5 H -0.208 1.208 6 H -0.215 1.215 7 C -0.640 4.640 8 H 0.067 0.933 9 C -0.046 4.046 10 C 0.030 3.970 11 H 0.098 0.902 12 N -0.369 5.369 13 C -0.087 4.087 14 C -0.091 4.091 15 C -0.179 4.179 16 C -0.115 4.115 17 C -0.232 4.232 18 C 0.087 3.913 19 O -0.181 6.181 20 C -0.057 4.057 21 C -0.221 4.221 22 C -0.210 4.210 23 H 0.079 0.921 24 H 0.032 0.968 25 H 0.022 0.978 26 H 0.139 0.861 27 H 0.161 0.839 28 H 0.148 0.852 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.699 -11.693 5.005 12.739 hybrid contribution -0.576 -0.973 -0.073 1.133 sum 0.123 -12.667 4.932 13.594 Atomic orbital electron populations 1.70772 1.06903 1.30616 1.46349 1.25822 0.96538 1.02645 0.93773 0.83562 0.74895 0.75431 0.76514 1.21437 1.20826 1.21464 1.21975 0.94063 0.91873 1.56041 0.93276 1.19847 0.95039 0.93338 0.96380 1.20160 0.94242 0.89781 0.92788 0.90194 1.59293 1.27834 1.45927 1.03843 1.19600 1.00969 0.98207 0.89935 1.20827 0.96587 0.93602 0.98112 1.20987 1.01919 0.97672 0.97347 1.20766 0.99443 0.99004 0.92308 1.21088 1.06144 0.96357 0.99653 1.18780 0.95914 0.90144 0.86483 1.86162 1.68314 1.49149 1.14517 1.23003 1.02428 0.98127 0.82108 1.23458 0.96045 1.00289 1.02295 1.23324 0.97911 1.03858 0.95876 0.92117 0.96781 0.97841 0.86142 0.83878 0.85228 0.86419 0.86459 0.85761 0.86128 0.87365 0.88063 0.87935 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.65 55.43 0.76 -27.43 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 3 Si 1.07 25.45 29.90 -169.99 -5.08 20.37 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.60 -17.00 8.55 -34.44 -0.29 -17.30 16 8 H 0.05 1.36 7.15 -52.49 -0.38 0.98 16 9 C -0.01 -0.20 3.91 -27.89 -0.11 -0.31 16 10 C 0.14 3.13 2.65 -68.86 -0.18 2.95 16 11 H 0.08 1.91 7.85 -51.93 -0.41 1.50 16 12 N -0.84 -16.58 8.68 -5.65 -0.05 -16.63 16 13 C -0.09 -1.71 5.10 -104.47 -0.53 -2.24 16 14 C -0.07 -1.26 9.25 -39.61 -0.37 -1.63 16 15 C -0.16 -2.38 10.04 -39.56 -0.40 -2.78 16 16 C -0.10 -1.37 10.04 -39.61 -0.40 -1.77 16 17 C -0.21 -3.32 9.19 -39.43 -0.36 -3.68 16 18 C 0.13 2.49 6.65 -39.22 -0.26 2.23 16 19 O -0.27 -5.17 9.52 -19.41 -0.18 -5.35 16 20 C 0.00 0.00 6.21 -26.73 -0.17 -0.16 16 21 C -0.18 -2.50 10.48 -26.73 -0.28 -2.78 16 22 C -0.17 -2.15 10.48 -26.73 -0.28 -2.43 16 23 H 0.27 8.39 7.22 -40.82 -0.29 8.10 16 24 H 0.01 0.40 7.90 -51.93 -0.41 -0.01 16 25 H 0.00 0.09 8.01 -51.92 -0.42 -0.32 16 26 H 0.33 6.06 7.28 -39.29 -0.29 5.78 16 27 H 0.35 7.03 7.90 -39.30 -0.31 6.72 16 28 H 0.13 2.08 6.25 -52.49 -0.33 1.76 16 29 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.58 5.52 -52.48 -0.29 1.29 16 32 H 0.12 1.46 5.33 -51.92 -0.28 1.19 16 33 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 300.18 15.07 4.52 4.52 Total: -1.00 -31.89 300.18 -8.49 -40.38 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -4.73 Total: 13.68 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -3.73 Total: -29.53 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.71 Total: -44.06 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.18 Total: -5.35 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.89 -8.49 -40.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.716 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds