Wall clock time and date at job start Mon Mar 30 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35963 * 116.99904 * 2 1 4 4 C 1.39163 * 119.85062 * 359.97438 * 3 2 1 5 5 C 1.37858 * 120.42571 * 180.02562 * 4 3 2 6 6 C 1.38669 * 119.94777 * 359.97134 * 5 4 3 7 7 O 1.35198 * 133.86850 * 180.38208 * 6 5 4 8 8 C 1.34218 * 108.15551 * 180.02562 * 7 6 5 9 9 C 1.50700 * 124.85449 * 179.83274 * 8 7 6 10 10 H 1.08991 * 109.47139 * 179.70188 * 9 8 7 11 11 C 1.53000 * 109.46902 * 59.70090 * 9 8 7 12 12 C 1.50701 * 109.47027 * 299.70407 * 9 8 7 13 13 H 1.07993 * 120.00227 * 5.36974 * 12 9 8 14 14 C 1.37882 * 119.99897 * 185.37430 * 12 9 8 15 15 N 1.31510 * 119.99918 * 185.16752 * 14 12 9 16 16 Si 1.86804 * 119.99902 * 5.16237 * 14 12 9 17 17 H 1.48495 * 109.47405 * 270.00242 * 16 14 12 18 18 H 1.48502 * 109.47077 * 30.00164 * 16 14 12 19 19 H 1.48501 * 109.46748 * 149.99729 * 16 14 12 20 20 N 1.29916 * 110.29100 * 359.57388 * 8 7 6 21 21 C 1.36074 * 108.80768 * 0.26020 * 20 8 7 22 22 C 1.38136 * 119.85384 * 179.97438 * 3 2 1 23 23 H 1.08993 * 109.46828 * 60.00688 * 1 2 3 24 24 H 1.09007 * 109.46557 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.46882 * 300.00089 * 1 2 3 26 26 H 1.08007 * 119.78670 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.02258 * 180.02562 * 5 4 3 28 28 H 1.09004 * 109.47372 * 54.97383 * 11 9 8 29 29 H 1.09008 * 109.47161 * 174.97111 * 11 9 8 30 30 H 1.09000 * 109.47428 * 294.96872 * 11 9 8 31 31 H 0.96997 * 120.00513 * 354.98855 * 15 14 12 32 32 H 1.08007 * 120.15157 * 0.02784 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2853 2.3766 -0.0005 5 6 1.8988 3.6111 -0.0011 6 6 3.2829 3.6964 -0.0005 7 8 4.1581 4.7268 0.0057 8 6 5.4009 4.2199 0.0022 9 6 6.6654 5.0397 0.0034 10 1 7.5292 4.3751 0.0052 11 6 6.6991 5.9233 1.2520 12 6 6.7022 5.9081 -1.2277 13 1 5.8534 5.9354 -1.8949 14 6 7.8195 6.6678 -1.5023 15 7 7.8139 7.5019 -2.5191 16 14 9.3412 6.5124 -0.4300 17 1 9.2600 7.4855 0.6888 18 1 9.4224 5.1344 0.1175 19 1 10.5511 6.7937 -1.2439 20 7 5.3579 2.9214 0.0031 21 6 4.0560 2.5256 0.0016 22 6 3.4259 1.2802 0.0005 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2071 2.3132 -0.0014 27 1 1.3018 4.5112 -0.0011 28 1 6.5826 5.3021 2.1401 29 1 7.6526 6.4494 1.2992 30 1 5.8862 6.6480 1.2063 31 1 7.0522 7.5304 -3.1189 32 1 4.0143 0.3745 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087967.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:12 Heat of formation + Delta-G solvation = -5.550661 kcal Electronic energy + Delta-G solvation = -17254.079294 eV Core-core repulsion = 14374.606975 eV Total energy + Delta-G solvation = -2879.472320 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.71520 -39.70497 -36.53064 -34.85050 -33.87594 -31.54816 -30.53518 -28.58327 -27.27055 -25.06228 -23.61934 -22.43066 -21.59950 -20.07316 -18.47240 -17.59780 -17.29695 -16.26056 -16.18332 -15.70095 -15.20701 -14.60826 -14.03995 -13.62984 -13.34765 -12.98542 -12.87614 -12.51191 -12.22029 -12.16016 -11.62058 -11.43756 -11.13209 -11.07340 -10.73696 -10.60116 -10.15192 -9.95321 -9.85956 -8.93737 -8.62471 -8.17008 -8.00755 -6.61928 -4.30822 0.94581 1.46517 2.92737 2.99678 3.20268 3.29319 3.37395 3.50596 3.83884 4.35003 4.48555 4.70348 4.86089 4.96509 4.99570 5.06243 5.15116 5.26415 5.44454 5.59498 5.80932 6.14324 6.17965 6.21235 6.28097 6.33389 6.46945 6.51825 6.68732 6.83038 7.09068 7.29799 7.61914 8.19727 8.25474 8.66468 9.40210 10.78918 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.052317 B = 0.005014 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.072809 B = 5583.540441 C = 5713.032580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.121 3.879 4 C -0.194 4.194 5 C -0.046 4.046 6 C -0.042 4.042 7 O -0.204 6.204 8 C 0.331 3.669 9 C 0.088 3.912 10 H 0.078 0.922 11 C -0.149 4.149 12 C -0.599 4.599 13 H 0.062 0.938 14 C 0.037 3.963 15 N -0.899 5.899 16 Si 1.052 2.948 17 H -0.279 1.279 18 H -0.274 1.274 19 H -0.285 1.285 20 N -0.519 5.519 21 C 0.074 3.926 22 C -0.113 4.113 23 H 0.055 0.945 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.270 0.730 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.757 -10.182 6.895 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.075 3.925 4 C -0.213 4.213 5 C -0.065 4.065 6 C -0.092 4.092 7 O -0.095 6.095 8 C 0.123 3.877 9 C 0.068 3.932 10 H 0.096 0.904 11 C -0.207 4.207 12 C -0.638 4.638 13 H 0.080 0.920 14 C -0.169 4.169 15 N -0.532 5.532 16 Si 0.880 3.120 17 H -0.205 1.205 18 H -0.200 1.200 19 H -0.211 1.211 20 N -0.249 5.249 21 C -0.039 4.039 22 C -0.133 4.133 23 H 0.074 0.926 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.157 0.843 27 H 0.153 0.847 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.656 -10.140 7.119 16.342 hybrid contribution -2.533 -0.005 -0.420 2.568 sum -13.189 -10.144 6.700 17.937 Atomic orbital electron populations 1.23043 0.78526 1.03803 1.01349 1.86068 1.21173 1.26457 1.89256 1.18451 0.91452 0.84149 0.98418 1.20908 0.99891 0.90917 1.09579 1.19552 0.88798 0.98198 0.99981 1.20337 0.92887 0.86694 1.09301 1.84615 1.16469 1.34585 1.73872 1.27511 0.85666 0.88059 0.86514 1.18372 0.84334 0.93108 0.97427 0.90450 1.22168 1.02516 0.99857 0.96160 1.21854 1.04872 1.29100 1.07939 0.91959 1.25809 1.00803 0.91754 0.98533 1.70803 1.34294 1.32977 1.15154 0.83903 0.75739 0.76932 0.75410 1.20542 1.19970 1.21120 1.70835 1.18131 1.10692 1.25216 1.19623 0.89574 0.93650 1.01024 1.19118 0.90867 0.95932 1.07350 0.92636 0.88330 0.92669 0.84316 0.84737 0.94525 0.92130 0.92056 0.91924 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.95 10.49 -19.62 -0.21 -4.15 16 3 C 0.12 1.76 6.68 -39.28 -0.26 1.49 16 4 C -0.19 -2.51 9.02 -39.38 -0.36 -2.87 16 5 C -0.05 -0.71 10.05 -39.56 -0.40 -1.10 16 6 C -0.04 -0.82 7.43 -38.65 -0.29 -1.11 16 7 O -0.20 -4.61 10.78 3.41 0.04 -4.57 16 8 C 0.33 7.77 6.68 -13.09 -0.09 7.68 16 9 C 0.09 2.10 2.35 -92.92 -0.22 1.88 16 10 H 0.08 1.84 6.65 -51.93 -0.35 1.50 16 11 C -0.15 -3.12 8.76 37.16 0.33 -2.79 16 12 C -0.60 -16.58 8.90 -34.44 -0.31 -16.89 16 13 H 0.06 1.89 7.97 -52.49 -0.42 1.47 16 14 C 0.04 1.03 5.43 -17.82 -0.10 0.93 16 15 N -0.90 -26.86 13.70 55.43 0.76 -26.10 16 16 Si 1.05 24.07 25.29 -169.99 -4.30 19.77 16 17 H -0.28 -5.95 6.81 56.52 0.38 -5.57 16 18 H -0.27 -5.79 6.36 56.52 0.36 -5.43 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 N -0.52 -11.88 11.34 -8.71 -0.10 -11.98 16 21 C 0.07 1.51 7.23 -84.71 -0.61 0.89 16 22 C -0.11 -1.92 10.03 -39.12 -0.39 -2.32 16 23 H 0.06 0.37 7.65 -51.93 -0.40 -0.02 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 26 H 0.14 1.27 6.26 -52.48 -0.33 0.94 16 27 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.23 4.40 -51.92 -0.23 1.01 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.27 8.10 8.72 -40.82 -0.36 7.74 16 32 H 0.14 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -31.38 274.07 -4.82 -36.20 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -3.44 Total: -0.32 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -1.70 Total: -12.98 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.66 Total: -38.08 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.17 Total: -8.72 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -4.30 Total: 19.77 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.38 -4.82 -36.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087967.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.650 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds