Wall clock time and date at job start Mon Mar 30 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35963 * 116.99904 * 2 1 4 4 C 1.39163 * 119.85062 * 359.97438 * 3 2 1 5 5 C 1.37858 * 120.42571 * 180.02562 * 4 3 2 6 6 C 1.38669 * 119.94777 * 359.97134 * 5 4 3 7 7 O 1.35198 * 133.86850 * 180.38208 * 6 5 4 8 8 C 1.34218 * 108.15551 * 180.02562 * 7 6 5 9 9 C 1.50700 * 124.85449 * 179.83274 * 8 7 6 10 10 H 1.08991 * 109.47139 * 179.70188 * 9 8 7 11 11 C 1.53000 * 109.46902 * 59.70090 * 9 8 7 12 12 C 1.50701 * 109.47027 * 299.70407 * 9 8 7 13 13 H 1.07993 * 120.00227 * 5.36974 * 12 9 8 14 14 C 1.37882 * 119.99897 * 185.37430 * 12 9 8 15 15 N 1.31510 * 119.99918 * 185.16752 * 14 12 9 16 16 Si 1.86804 * 119.99902 * 5.16237 * 14 12 9 17 17 H 1.48495 * 109.47405 * 270.00242 * 16 14 12 18 18 H 1.48502 * 109.47077 * 30.00164 * 16 14 12 19 19 H 1.48501 * 109.46748 * 149.99729 * 16 14 12 20 20 N 1.29916 * 110.29100 * 359.57388 * 8 7 6 21 21 C 1.36074 * 108.80768 * 0.26020 * 20 8 7 22 22 C 1.38136 * 119.85384 * 179.97438 * 3 2 1 23 23 H 1.08993 * 109.46828 * 60.00688 * 1 2 3 24 24 H 1.09007 * 109.46557 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.46882 * 300.00089 * 1 2 3 26 26 H 1.08007 * 119.78670 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.02258 * 180.02562 * 5 4 3 28 28 H 1.09004 * 109.47372 * 54.97383 * 11 9 8 29 29 H 1.09008 * 109.47161 * 174.97111 * 11 9 8 30 30 H 1.09000 * 109.47428 * 294.96872 * 11 9 8 31 31 H 0.96997 * 120.00513 * 354.98855 * 15 14 12 32 32 H 1.08007 * 120.15157 * 0.02784 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2853 2.3766 -0.0005 5 6 1.8988 3.6111 -0.0011 6 6 3.2829 3.6964 -0.0005 7 8 4.1581 4.7268 0.0057 8 6 5.4009 4.2199 0.0022 9 6 6.6654 5.0397 0.0034 10 1 7.5292 4.3751 0.0052 11 6 6.6991 5.9233 1.2520 12 6 6.7022 5.9081 -1.2277 13 1 5.8534 5.9354 -1.8949 14 6 7.8195 6.6678 -1.5023 15 7 7.8139 7.5019 -2.5191 16 14 9.3412 6.5124 -0.4300 17 1 9.2600 7.4855 0.6888 18 1 9.4224 5.1344 0.1175 19 1 10.5511 6.7937 -1.2439 20 7 5.3579 2.9214 0.0031 21 6 4.0560 2.5256 0.0016 22 6 3.4259 1.2802 0.0005 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2071 2.3132 -0.0014 27 1 1.3018 4.5112 -0.0011 28 1 6.5826 5.3021 2.1401 29 1 7.6526 6.4494 1.2992 30 1 5.8862 6.6480 1.2063 31 1 7.0522 7.5304 -3.1189 32 1 4.0143 0.3745 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087967.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:11 Heat of formation + Delta-G solvation = -29.501345 kcal Electronic energy + Delta-G solvation = -17255.117874 eV Core-core repulsion = 14374.606975 eV Total energy + Delta-G solvation = -2880.510899 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.25318 -40.78292 -37.78242 -36.67153 -35.51344 -33.53776 -31.74469 -29.95911 -28.04949 -26.97273 -25.26847 -23.78144 -23.03808 -21.79878 -19.97929 -19.34667 -18.61581 -17.74532 -17.55981 -16.61658 -16.50435 -16.30499 -15.43302 -15.24618 -14.67541 -14.48034 -14.22056 -14.08298 -13.53552 -13.44710 -13.28534 -13.06321 -12.50849 -12.46842 -12.21261 -11.90338 -11.82467 -11.60047 -11.48625 -11.00327 -10.72387 -9.59001 -9.27279 -8.84736 -6.55629 -0.40913 0.16167 1.36827 1.46623 1.57533 1.59486 1.73781 2.11997 2.45326 2.50314 2.98428 3.05240 3.47159 3.72790 3.93931 4.07497 4.23492 4.36573 4.40988 4.46041 4.51388 4.52726 4.72238 4.81057 4.92398 4.99037 5.01306 5.13846 5.19310 5.24825 5.38676 5.63846 5.88236 6.29569 6.35621 6.63482 7.24788 8.53902 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.052317 B = 0.005014 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.072809 B = 5583.540441 C = 5713.032580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.137 3.863 4 C -0.166 4.166 5 C -0.047 4.047 6 C -0.071 4.071 7 O -0.223 6.223 8 C 0.301 3.699 9 C 0.087 3.913 10 H 0.080 0.920 11 C -0.142 4.142 12 C -0.602 4.602 13 H 0.015 0.985 14 C -0.010 4.010 15 N -0.930 5.930 16 Si 1.088 2.912 17 H -0.248 1.248 18 H -0.246 1.246 19 H -0.287 1.287 20 N -0.532 5.532 21 C 0.039 3.961 22 C -0.131 4.131 23 H 0.071 0.929 24 H 0.122 0.878 25 H 0.074 0.926 26 H 0.190 0.810 27 H 0.165 0.835 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.253 0.747 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.769 -11.728 8.751 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.240 6.240 3 C 0.090 3.910 4 C -0.184 4.184 5 C -0.065 4.065 6 C -0.120 4.120 7 O -0.115 6.115 8 C 0.091 3.909 9 C 0.067 3.933 10 H 0.098 0.902 11 C -0.200 4.200 12 C -0.640 4.640 13 H 0.033 0.967 14 C -0.209 4.209 15 N -0.565 5.565 16 Si 0.907 3.093 17 H -0.173 1.173 18 H -0.169 1.169 19 H -0.214 1.214 20 N -0.263 5.263 21 C -0.073 4.073 22 C -0.151 4.151 23 H 0.089 0.911 24 H 0.140 0.860 25 H 0.092 0.908 26 H 0.207 0.793 27 H 0.182 0.818 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.731 -11.712 8.984 19.493 hybrid contribution -2.262 0.243 -1.062 2.511 sum -14.993 -11.469 7.922 20.472 Atomic orbital electron populations 1.23507 0.75534 1.06157 1.02956 1.86091 1.24147 1.25222 1.88497 1.18519 0.90723 0.85652 0.96082 1.21464 1.02125 0.89139 1.05669 1.20081 0.86991 1.00474 0.98986 1.20980 0.94329 0.85697 1.11019 1.84529 1.16693 1.35906 1.74342 1.27241 0.86020 0.88358 0.89242 1.18249 0.85154 0.93000 0.96884 0.90229 1.22054 1.02686 0.99565 0.95678 1.21922 1.03333 1.29932 1.08843 0.96666 1.27369 1.03931 0.90688 0.98897 1.70940 1.33847 1.35184 1.16531 0.83538 0.71595 0.79317 0.74842 1.17261 1.16949 1.21392 1.70692 1.20201 1.10579 1.24867 1.19918 0.88823 0.95204 1.03350 1.19278 0.92493 0.94884 1.08434 0.91087 0.85960 0.90789 0.79305 0.81792 0.91597 0.91241 0.92811 0.93811 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.24 16 2 O -0.33 -6.93 10.49 -93.13 -0.98 -7.90 16 3 C 0.14 3.57 6.68 22.47 0.15 3.72 16 4 C -0.17 -3.59 9.02 22.40 0.20 -3.38 16 5 C -0.05 -1.30 10.05 22.28 0.22 -1.08 16 6 C -0.07 -2.81 7.43 22.87 0.17 -2.64 16 7 O -0.22 -10.46 10.78 -10.71 -0.12 -10.57 16 8 C 0.30 14.64 6.68 88.39 0.59 15.23 16 9 C 0.09 4.25 2.35 -12.29 -0.03 4.22 16 10 H 0.08 3.80 6.65 -2.39 -0.02 3.78 16 11 C -0.14 -5.83 8.76 71.98 0.63 -5.20 16 12 C -0.60 -34.85 8.90 25.60 0.23 -34.63 16 13 H 0.01 0.98 7.97 -2.91 -0.02 0.96 16 14 C -0.01 -0.60 5.43 84.66 0.46 -0.14 16 15 N -0.93 -57.83 13.70 21.45 0.29 -57.54 16 16 Si 1.09 47.74 25.29 68.60 1.73 49.47 16 17 H -0.25 -9.66 6.81 99.48 0.68 -8.99 16 18 H -0.25 -9.60 6.36 99.48 0.63 -8.97 16 19 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 20 N -0.53 -25.17 11.34 -296.29 -3.36 -28.53 16 21 C 0.04 1.60 7.23 39.31 0.28 1.89 16 22 C -0.13 -4.39 10.03 22.57 0.23 -4.16 16 23 H 0.07 0.55 7.65 -2.39 -0.02 0.54 16 24 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 26 H 0.19 2.19 6.26 -2.91 -0.02 2.17 16 27 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 28 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.07 2.69 4.40 -2.38 -0.01 2.68 16 30 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.25 16.10 8.72 -92.71 -0.81 15.29 16 32 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -73.66 274.07 2.82 -70.84 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.00 Total: 9.16 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 4.25 Total: -24.93 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -3.07 Total: -86.07 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.09 Total: -18.47 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.73 Total: 49.47 kcal Total: -73.66 2.82 -70.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087967.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.338 kcal (2) G-P(sol) polarization free energy of solvation -73.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds