Wall clock time and date at job start Mon Mar 30 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35968 * 116.99980 * 2 1 4 4 C 1.39152 * 119.85196 * 0.02562 * 3 2 1 5 5 C 1.37856 * 120.42776 * 179.97438 * 4 3 2 6 6 C 1.38675 * 119.94471 * 0.02562 * 5 4 3 7 7 O 1.35206 * 133.86549 * 179.68379 * 6 5 4 8 8 C 1.34215 * 108.15095 * 179.89748 * 7 6 5 9 9 C 1.50705 * 124.85147 * 180.15267 * 8 7 6 10 10 H 1.09004 * 109.46754 * 180.28089 * 9 8 7 11 11 C 1.52997 * 109.47400 * 300.28588 * 9 8 7 12 12 C 1.50697 * 109.46921 * 60.28939 * 9 8 7 13 13 H 1.08004 * 120.00002 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00106 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99729 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 120.00075 * 179.97438 * 14 12 9 17 17 H 1.48491 * 109.47149 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46911 * 119.99848 * 16 14 12 19 19 H 1.48493 * 109.46957 * 239.99587 * 16 14 12 20 20 N 1.29912 * 110.29338 * 0.40180 * 8 7 6 21 21 C 1.36072 * 108.80955 * 359.75359 * 20 8 7 22 22 C 1.38142 * 119.84743 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.46806 * 299.99716 * 1 2 3 24 24 H 1.09007 * 109.47422 * 59.99452 * 1 2 3 25 25 H 1.08997 * 109.47424 * 179.97438 * 1 2 3 26 26 H 1.08008 * 119.78913 * 359.97438 * 4 3 2 27 27 H 1.08000 * 120.02889 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47155 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.46730 * 299.99842 * 11 9 8 30 30 H 1.08997 * 109.46917 * 59.99922 * 11 9 8 31 31 H 0.97003 * 119.99877 * 180.02562 * 15 14 12 32 32 H 1.08001 * 120.15718 * 0.05231 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2853 2.3766 0.0005 5 6 1.8988 3.6111 0.0011 6 6 3.2829 3.6963 0.0005 7 8 4.1582 4.7267 -0.0045 8 6 5.4010 4.2198 0.0001 9 6 6.6655 5.0396 0.0001 10 1 7.5294 4.3748 -0.0006 11 6 6.7006 5.9230 -1.2486 12 6 6.7011 5.9081 1.2311 13 1 5.8890 5.8705 1.9422 14 6 7.7698 6.7514 1.4492 15 7 8.7584 6.7975 0.5831 16 14 7.8136 7.8285 2.9748 17 1 6.5908 7.5916 3.7832 18 1 9.0141 7.4941 3.7825 19 1 7.8707 9.2564 2.5711 20 7 5.3579 2.9214 -0.0007 21 6 4.0560 2.5256 -0.0004 22 6 3.4259 1.2801 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2071 2.3133 0.0005 27 1 1.3020 4.5112 0.0019 28 1 7.6155 6.5156 -1.2488 29 1 6.6749 5.2947 -2.1389 30 1 5.8368 6.5876 -1.2478 31 1 9.5105 7.3906 0.7367 32 1 4.0142 0.3744 0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087969.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:14 Heat of formation + Delta-G solvation = -6.655840 kcal Electronic energy + Delta-G solvation = -17205.826092 eV Core-core repulsion = 14326.305848 eV Total energy + Delta-G solvation = -2879.520244 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.59701 -39.63808 -36.43973 -34.68172 -33.79191 -31.06275 -30.44106 -28.32616 -27.21442 -25.37587 -23.57031 -22.35952 -21.51545 -20.17796 -18.35295 -17.21734 -16.76298 -16.14022 -15.89631 -15.56122 -15.18003 -14.68054 -13.97516 -13.61184 -13.14999 -12.94158 -12.79066 -12.40615 -12.15161 -11.74243 -11.23119 -11.05081 -11.02453 -11.00071 -10.66748 -10.48248 -10.36655 -10.11525 -9.82910 -9.25600 -8.57950 -8.06772 -7.90544 -6.21145 -4.30143 1.03542 1.54408 3.04616 3.07965 3.22724 3.30488 3.30818 3.36605 3.92643 4.29299 4.63855 4.78959 4.92315 5.00444 5.07115 5.13058 5.14894 5.30283 5.54889 5.68284 5.95921 6.25274 6.39095 6.43444 6.58578 6.64951 6.72716 6.81853 6.99129 7.34563 7.39525 7.61677 7.81856 8.00027 8.40783 8.69782 9.35686 10.85056 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.045025 B = 0.004943 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.726648 B = 5663.620963 C = 5837.136502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.120 3.880 4 C -0.196 4.196 5 C -0.047 4.047 6 C -0.044 4.044 7 O -0.205 6.205 8 C 0.327 3.673 9 C 0.119 3.881 10 H 0.079 0.921 11 C -0.138 4.138 12 C -0.522 4.522 13 H 0.062 0.938 14 C 0.069 3.931 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.281 1.281 20 N -0.522 5.522 21 C 0.075 3.925 22 C -0.114 4.114 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.101 0.899 29 H 0.017 0.983 30 H 0.038 0.962 31 H 0.266 0.734 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.239 -7.536 -2.043 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.074 3.926 4 C -0.215 4.215 5 C -0.066 4.066 6 C -0.094 4.094 7 O -0.097 6.097 8 C 0.119 3.881 9 C 0.099 3.901 10 H 0.097 0.903 11 C -0.196 4.196 12 C -0.560 4.560 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.522 5.522 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.207 1.207 20 N -0.252 5.252 21 C -0.038 4.038 22 C -0.134 4.134 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.116 0.884 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.119 0.881 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.471 -8.031 -2.081 15.821 hybrid contribution -0.819 1.128 0.823 1.619 sum -14.290 -6.903 -1.259 15.919 Atomic orbital electron populations 1.23031 0.78619 1.03725 1.01312 1.86064 1.21099 1.26537 1.89311 1.18449 0.91460 0.84101 0.98572 1.20880 0.99802 0.90956 1.09890 1.19538 0.88842 0.98115 1.00058 1.20351 0.92882 0.86846 1.09339 1.84630 1.16602 1.34570 1.73896 1.28191 0.85906 0.88277 0.85773 1.17961 0.82538 0.92572 0.96988 0.90346 1.21845 1.04093 0.99532 0.94174 1.20919 1.06618 1.23058 1.05421 0.91936 1.24888 0.94910 0.96592 0.97008 1.69864 1.08968 1.38189 1.35181 0.86325 0.78252 0.79927 0.82350 1.19621 1.20654 1.20663 1.70871 1.17903 1.10929 1.25468 1.19663 0.89743 0.93605 1.00785 1.19119 0.90830 0.95967 1.07463 0.92684 0.92705 0.88400 0.84438 0.84823 0.88093 0.96348 0.94332 0.92396 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.05 10.49 -19.64 -0.21 -4.25 16 3 C 0.12 1.78 6.68 -39.28 -0.26 1.51 16 4 C -0.20 -2.59 9.02 -39.38 -0.36 -2.94 16 5 C -0.05 -0.72 10.05 -39.56 -0.40 -1.12 16 6 C -0.04 -0.87 7.43 -38.65 -0.29 -1.16 16 7 O -0.21 -4.68 10.78 3.39 0.04 -4.64 16 8 C 0.33 7.84 6.68 -13.09 -0.09 7.76 16 9 C 0.12 3.00 2.77 -92.92 -0.26 2.74 16 10 H 0.08 2.09 8.14 -51.93 -0.42 1.66 16 11 C -0.14 -3.24 8.95 37.16 0.33 -2.91 16 12 C -0.52 -14.09 8.55 -34.44 -0.29 -14.38 16 13 H 0.06 1.72 7.74 -52.48 -0.41 1.31 16 14 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 15 N -0.88 -23.91 11.32 55.43 0.63 -23.28 16 16 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 N -0.52 -12.26 11.34 -8.71 -0.10 -12.36 16 21 C 0.07 1.55 7.23 -84.71 -0.61 0.94 16 22 C -0.11 -1.99 10.03 -39.12 -0.39 -2.38 16 23 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 24 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.14 1.29 6.26 -52.48 -0.33 0.96 16 27 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 279.64 15.07 4.21 4.21 Total: -1.00 -29.49 279.64 -5.68 -35.18 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -3.52 Total: -1.52 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.72 Total: -8.98 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.53 Total: -35.64 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.17 Total: -8.89 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.49 -5.68 -35.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087969.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.520 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds