Wall clock time and date at job start Mon Mar 30 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35968 * 116.99980 * 2 1 4 4 C 1.39152 * 119.85196 * 0.02562 * 3 2 1 5 5 C 1.37856 * 120.42776 * 179.97438 * 4 3 2 6 6 C 1.38675 * 119.94471 * 0.02562 * 5 4 3 7 7 O 1.35206 * 133.86549 * 179.68379 * 6 5 4 8 8 C 1.34215 * 108.15095 * 179.89748 * 7 6 5 9 9 C 1.50705 * 124.85147 * 180.15267 * 8 7 6 10 10 H 1.09004 * 109.46754 * 180.28089 * 9 8 7 11 11 C 1.52997 * 109.47400 * 300.28588 * 9 8 7 12 12 C 1.50697 * 109.46921 * 60.28939 * 9 8 7 13 13 H 1.08004 * 120.00002 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00106 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99729 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 120.00075 * 179.97438 * 14 12 9 17 17 H 1.48491 * 109.47149 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46911 * 119.99848 * 16 14 12 19 19 H 1.48493 * 109.46957 * 239.99587 * 16 14 12 20 20 N 1.29912 * 110.29338 * 0.40180 * 8 7 6 21 21 C 1.36072 * 108.80955 * 359.75359 * 20 8 7 22 22 C 1.38142 * 119.84743 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.46806 * 299.99716 * 1 2 3 24 24 H 1.09007 * 109.47422 * 59.99452 * 1 2 3 25 25 H 1.08997 * 109.47424 * 179.97438 * 1 2 3 26 26 H 1.08008 * 119.78913 * 359.97438 * 4 3 2 27 27 H 1.08000 * 120.02889 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47155 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.46730 * 299.99842 * 11 9 8 30 30 H 1.08997 * 109.46917 * 59.99922 * 11 9 8 31 31 H 0.97003 * 119.99877 * 180.02562 * 15 14 12 32 32 H 1.08001 * 120.15718 * 0.05231 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2853 2.3766 0.0005 5 6 1.8988 3.6111 0.0011 6 6 3.2829 3.6963 0.0005 7 8 4.1582 4.7267 -0.0045 8 6 5.4010 4.2198 0.0001 9 6 6.6655 5.0396 0.0001 10 1 7.5294 4.3748 -0.0006 11 6 6.7006 5.9230 -1.2486 12 6 6.7011 5.9081 1.2311 13 1 5.8890 5.8705 1.9422 14 6 7.7698 6.7514 1.4492 15 7 8.7584 6.7975 0.5831 16 14 7.8136 7.8285 2.9748 17 1 6.5908 7.5916 3.7832 18 1 9.0141 7.4941 3.7825 19 1 7.8707 9.2564 2.5711 20 7 5.3579 2.9214 -0.0007 21 6 4.0560 2.5256 -0.0004 22 6 3.4259 1.2801 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2071 2.3133 0.0005 27 1 1.3020 4.5112 0.0019 28 1 7.6155 6.5156 -1.2488 29 1 6.6749 5.2947 -2.1389 30 1 5.8368 6.5876 -1.2478 31 1 9.5105 7.3906 0.7367 32 1 4.0142 0.3744 0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087969.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:14 Heat of formation + Delta-G solvation = -27.093363 kcal Electronic energy + Delta-G solvation = -17206.712329 eV Core-core repulsion = 14326.305848 eV Total energy + Delta-G solvation = -2880.406482 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.16655 -40.73566 -37.70854 -36.54309 -35.44717 -32.96890 -31.67954 -29.76377 -28.01093 -27.39726 -25.21352 -23.73025 -22.97537 -21.92782 -19.60532 -18.60918 -18.51941 -17.56195 -17.48658 -16.69148 -16.56725 -16.24329 -15.40342 -15.16830 -14.75137 -14.35684 -14.03346 -13.72799 -13.45894 -13.12945 -13.07436 -12.87584 -12.53534 -12.39820 -12.29511 -12.14706 -12.03391 -11.78554 -11.40162 -11.20766 -10.60449 -9.49583 -9.20580 -8.23223 -6.40339 -0.33985 0.22196 1.40980 1.42586 1.47633 1.56939 1.66225 2.16974 2.39287 2.56499 3.04769 3.18311 3.54208 3.78665 3.99702 4.18162 4.32317 4.44032 4.48692 4.54547 4.69330 4.80921 4.84860 4.90566 5.04163 5.07335 5.19187 5.27363 5.28404 5.41613 5.61678 5.81943 6.01558 6.34095 6.60635 6.75084 7.28550 8.82815 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.045025 B = 0.004943 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.726648 B = 5663.620963 C = 5837.136502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.137 3.863 4 C -0.168 4.168 5 C -0.044 4.044 6 C -0.070 4.070 7 O -0.219 6.219 8 C 0.301 3.699 9 C 0.120 3.880 10 H 0.052 0.948 11 C -0.124 4.124 12 C -0.543 4.543 13 H 0.049 0.951 14 C 0.028 3.972 15 N -0.906 5.906 16 Si 0.967 3.033 17 H -0.274 1.274 18 H -0.275 1.275 19 H -0.270 1.270 20 N -0.541 5.541 21 C 0.038 3.962 22 C -0.134 4.134 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.121 0.879 26 H 0.190 0.810 27 H 0.167 0.833 28 H 0.085 0.915 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.271 0.729 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.476 -7.937 -1.660 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.241 6.241 3 C 0.090 3.910 4 C -0.186 4.186 5 C -0.062 4.062 6 C -0.120 4.120 7 O -0.111 6.111 8 C 0.092 3.908 9 C 0.101 3.899 10 H 0.070 0.930 11 C -0.183 4.183 12 C -0.581 4.581 13 H 0.067 0.933 14 C -0.173 4.173 15 N -0.543 5.543 16 Si 0.792 3.208 17 H -0.198 1.198 18 H -0.200 1.200 19 H -0.195 1.195 20 N -0.272 5.272 21 C -0.074 4.074 22 C -0.154 4.154 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.139 0.861 26 H 0.207 0.793 27 H 0.185 0.815 28 H 0.103 0.897 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.736 -8.452 -1.709 18.827 hybrid contribution -0.062 1.014 0.679 1.222 sum -16.798 -7.438 -1.030 18.400 Atomic orbital electron populations 1.23498 0.75567 1.06089 1.02969 1.86086 1.24133 1.25333 1.88554 1.18511 0.90652 0.85676 0.96186 1.21450 1.02073 0.89148 1.05917 1.20085 0.86900 1.00460 0.98784 1.20983 0.94321 0.85693 1.10995 1.84535 1.16523 1.35703 1.74307 1.27645 0.86182 0.88402 0.88589 1.17699 0.82773 0.92202 0.97247 0.93029 1.21667 1.03154 0.99242 0.94229 1.21065 1.06770 1.24142 1.06138 0.93258 1.25640 0.94348 0.97524 0.99759 1.69954 1.09303 1.38612 1.36466 0.85363 0.78117 0.78526 0.78821 1.19813 1.19993 1.19501 1.70724 1.20271 1.10953 1.25251 1.19951 0.88868 0.95306 1.03238 1.19263 0.92533 0.94845 1.08760 0.90984 0.90858 0.86056 0.79303 0.81521 0.89668 0.94818 0.94190 0.91934 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -7.17 10.49 -93.19 -0.98 -8.15 16 3 C 0.14 3.64 6.68 22.47 0.15 3.79 16 4 C -0.17 -3.65 9.02 22.40 0.20 -3.45 16 5 C -0.04 -1.21 10.05 22.28 0.22 -0.99 16 6 C -0.07 -2.81 7.43 22.87 0.17 -2.64 16 7 O -0.22 -10.31 10.78 -10.78 -0.12 -10.43 16 8 C 0.30 15.22 6.68 88.39 0.59 15.81 16 9 C 0.12 6.41 2.77 -12.29 -0.03 6.38 16 10 H 0.05 2.95 8.14 -2.39 -0.02 2.93 16 11 C -0.12 -6.08 8.95 71.98 0.64 -5.43 16 12 C -0.54 -30.48 8.55 25.60 0.22 -30.26 16 13 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 14 C 0.03 1.53 5.30 84.66 0.45 1.98 16 15 N -0.91 -50.01 11.32 21.45 0.24 -49.77 16 16 Si 0.97 42.76 29.54 68.60 2.03 44.79 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 N -0.54 -26.77 11.34 -296.29 -3.36 -30.13 16 21 C 0.04 1.62 7.23 39.31 0.28 1.91 16 22 C -0.13 -4.64 10.03 22.57 0.23 -4.42 16 23 H 0.07 0.57 7.65 -2.39 -0.02 0.55 16 24 H 0.07 0.56 7.65 -2.38 -0.02 0.54 16 25 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.19 2.19 6.26 -2.91 -0.02 2.17 16 27 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 28 H 0.08 4.40 6.07 -2.39 -0.01 4.39 16 29 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 32 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -67.43 279.64 3.19 -64.25 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.13 Total: 5.53 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 4.24 Total: -16.09 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -3.12 Total: -79.90 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -1.09 Total: -18.57 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -67.43 3.19 -64.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087969.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.152 kcal (2) G-P(sol) polarization free energy of solvation -67.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds