Wall clock time and date at job start Mon Mar 30 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.36803 * 125.03475 * 2 1 4 4 H 0.96992 * 125.06868 * 359.97438 * 3 2 1 5 5 C 1.37780 * 109.85371 * 179.97438 * 3 2 1 6 6 C 1.40622 * 107.16074 * 0.02562 * 5 3 2 7 7 C 1.39669 * 119.93714 * 180.02562 * 6 5 3 8 8 C 1.36637 * 119.81128 * 359.96662 * 7 6 5 9 9 C 1.50697 * 119.72714 * 180.02562 * 8 7 6 10 10 C 1.50708 * 109.46804 * 269.99003 * 9 8 7 11 11 H 1.07996 * 119.99661 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99577 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00543 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99517 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47372 * 60.00484 * 14 12 10 16 16 H 1.48497 * 109.47193 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.47404 * 300.00164 * 14 12 10 18 18 C 1.38800 * 120.54337 * 0.03019 * 8 7 6 19 19 C 1.37975 * 120.63732 * 359.97438 * 18 8 7 20 20 F 1.35100 * 120.13124 * 180.02562 * 19 18 8 21 21 C 1.34254 * 125.03630 * 179.97438 * 2 1 3 22 22 C 1.50693 * 126.48929 * 0.02562 * 21 2 1 23 23 H 1.09004 * 109.46535 * 270.03736 * 1 2 3 24 24 H 1.09000 * 109.47418 * 30.03585 * 1 2 3 25 25 H 1.08999 * 109.47352 * 150.04465 * 1 2 3 26 26 H 1.07996 * 120.09194 * 180.02562 * 7 6 5 27 27 H 1.09001 * 109.47308 * 29.98722 * 9 8 7 28 28 H 1.09002 * 109.47353 * 149.99660 * 9 8 7 29 29 H 0.96995 * 120.00385 * 179.97438 * 13 12 10 30 30 H 1.08010 * 119.67708 * 180.26386 * 18 8 7 31 31 H 1.08997 * 109.46885 * 270.01715 * 22 21 2 32 32 H 1.08994 * 109.47579 * 30.02358 * 22 21 2 33 33 H 1.09006 * 109.47229 * 150.02729 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2923 1.1202 0.0000 4 1 1.9622 2.0322 -0.0004 5 6 3.6220 0.7593 0.0006 6 6 3.6706 -0.6460 0.0004 7 6 4.9043 -1.3008 0.0014 8 6 6.0601 -0.5721 0.0019 9 6 7.3902 -1.2805 0.0024 10 6 7.8330 -1.5165 1.4235 11 1 7.2131 -1.1868 2.2440 12 6 9.0291 -2.1542 1.6759 13 7 9.7838 -2.5561 0.6767 14 14 9.5776 -2.4474 3.4373 15 1 8.5702 -3.2846 4.1367 16 1 10.8883 -3.1454 3.4379 17 1 9.7108 -1.1446 4.1377 18 6 6.0192 0.8153 0.0021 19 6 4.8119 1.4832 0.0012 20 9 4.7840 2.8339 0.0008 21 6 2.2777 -1.0993 0.0005 22 6 1.8002 -2.5285 0.0006 23 1 -0.3632 0.0007 1.0277 24 1 -0.3634 0.8896 -0.5144 25 1 -0.3634 -0.8904 -0.5131 26 1 4.9445 -2.3800 0.0008 27 1 7.2927 -2.2369 -0.5113 28 1 8.1295 -0.6659 -0.5111 29 1 10.6254 -3.0044 0.8543 30 1 6.9415 1.3775 -0.0019 31 1 1.6844 -2.8728 1.0283 32 1 0.8414 -2.5914 -0.5139 33 1 2.5296 -3.1554 -0.5125 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261091776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:51 Heat of formation + Delta-G solvation = -13.374918 kcal Electronic energy + Delta-G solvation = -17120.220464 eV Core-core repulsion = 14252.781648 eV Total energy + Delta-G solvation = -2867.438816 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.41729 -40.95407 -37.03502 -33.21521 -32.77389 -31.08906 -29.82567 -28.36133 -26.35100 -25.65795 -23.18282 -21.34088 -20.44133 -18.78120 -17.63793 -16.40127 -16.19563 -15.39462 -15.38761 -14.88050 -14.54316 -14.47402 -13.54669 -13.24809 -12.85547 -12.64110 -12.53038 -12.47076 -12.27731 -12.11166 -11.65055 -11.40379 -11.17920 -10.80394 -10.63738 -10.55974 -10.43362 -9.57216 -9.32831 -8.94187 -8.39815 -7.62071 -7.06298 -6.01482 -4.05491 1.45313 2.10473 2.82309 3.24139 3.34491 3.38342 3.41925 4.32232 4.51684 4.68626 4.78027 5.04075 5.24870 5.33135 5.34977 5.38038 5.42863 5.65502 5.74987 5.91118 6.02638 6.03219 6.08484 6.30096 6.38384 6.70981 6.89867 7.06462 7.08917 7.20648 7.51797 7.67125 7.73444 7.84424 7.94146 8.34054 8.99458 9.58271 11.07985 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.005899 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.582301 B = 4745.711809 C = 5328.309369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.069 3.931 3 N -0.592 5.592 4 H 0.410 0.590 5 C 0.047 3.953 6 C -0.073 4.073 7 C -0.088 4.088 8 C -0.036 4.036 9 C 0.053 3.947 10 C -0.513 4.513 11 H 0.057 0.943 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.121 4.121 19 C 0.070 3.930 20 F -0.154 7.154 21 C -0.173 4.173 22 C -0.074 4.074 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.125 0.875 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.135 0.865 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.867 4.390 -2.290 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 N -0.197 5.197 4 H 0.247 0.753 5 C -0.059 4.059 6 C -0.078 4.078 7 C -0.107 4.107 8 C -0.038 4.038 9 C 0.016 3.984 10 C -0.551 4.551 11 H 0.075 0.925 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.140 4.140 19 C 0.048 3.952 20 F -0.133 7.133 21 C -0.181 4.181 22 C -0.131 4.131 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.143 0.857 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.760 4.455 -2.335 17.498 hybrid contribution 0.331 0.687 1.028 1.280 sum -16.428 5.142 -1.307 17.264 Atomic orbital electron populations 1.20411 0.88111 1.03271 1.02792 1.19971 0.92900 0.85613 1.05421 1.41414 1.03633 1.07763 1.66841 0.75336 1.17970 0.83576 0.94511 1.09844 1.18956 0.93361 0.90510 1.04951 1.20238 0.89348 1.00013 1.01104 1.20019 0.97718 0.91904 0.94123 1.18320 0.87026 0.95287 0.97785 1.21046 1.04634 1.37880 0.91518 0.92468 1.24990 0.96495 0.95553 0.97173 1.69938 1.12857 1.39799 1.30747 0.86611 0.77793 0.78469 0.84899 1.20153 1.21248 1.20202 1.20887 0.95112 0.95312 1.02713 1.16695 0.91852 0.75583 1.11049 1.91401 1.97372 1.29642 1.94876 1.19981 0.90556 0.94625 1.12933 1.20078 1.00305 0.91222 1.01512 0.90768 0.91752 0.89856 0.85707 0.95002 0.95192 0.92791 0.84701 0.92028 0.92350 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.18 36.00 0.37 -0.38 16 2 C 0.07 0.90 7.08 -81.78 -0.58 0.32 16 3 N -0.59 -8.46 6.07 -6.91 -0.04 -8.50 16 4 H 0.41 4.68 8.96 -40.82 -0.37 4.32 16 5 C 0.05 0.84 7.26 -83.91 -0.61 0.23 16 6 C -0.07 -1.36 6.35 -105.15 -0.67 -2.03 16 7 C -0.09 -1.79 9.67 -39.63 -0.38 -2.17 16 8 C -0.04 -0.80 5.03 -104.99 -0.53 -1.33 16 9 C 0.05 1.35 5.08 -29.03 -0.15 1.20 16 10 C -0.51 -14.33 9.09 -34.44 -0.31 -14.64 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 14 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.12 -2.47 9.64 -39.47 -0.38 -2.85 16 19 C 0.07 1.33 7.32 -39.29 -0.29 1.04 16 20 F -0.15 -2.76 17.27 2.25 0.04 -2.72 16 21 C -0.17 -2.63 6.31 -102.71 -0.65 -3.28 16 22 C -0.07 -0.89 10.17 36.00 0.37 -0.53 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.60 7.04 -51.93 -0.37 0.24 16 26 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 27 H 0.03 0.84 8.07 -51.93 -0.42 0.43 16 28 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.14 2.67 8.06 -52.48 -0.42 2.24 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.55 7.05 -51.93 -0.37 0.19 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 290.09 15.07 4.37 4.37 Total: -1.00 -30.86 290.09 -7.84 -38.70 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.01 Total: 0.01 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -3.91 Total: -22.84 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.69 Total: -34.08 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.86 -7.84 -38.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.324 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds