Wall clock time and date at job start Mon Mar 30 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.36803 * 125.03475 * 2 1 4 4 H 0.96992 * 125.06868 * 359.97438 * 3 2 1 5 5 C 1.37780 * 109.85371 * 179.97438 * 3 2 1 6 6 C 1.40622 * 107.16074 * 0.02562 * 5 3 2 7 7 C 1.39669 * 119.93714 * 180.02562 * 6 5 3 8 8 C 1.36637 * 119.81128 * 359.96662 * 7 6 5 9 9 C 1.50697 * 119.72714 * 180.02562 * 8 7 6 10 10 C 1.50708 * 109.46804 * 269.99003 * 9 8 7 11 11 H 1.07996 * 119.99661 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99577 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00543 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99517 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47372 * 60.00484 * 14 12 10 16 16 H 1.48497 * 109.47193 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.47404 * 300.00164 * 14 12 10 18 18 C 1.38800 * 120.54337 * 0.03019 * 8 7 6 19 19 C 1.37975 * 120.63732 * 359.97438 * 18 8 7 20 20 F 1.35100 * 120.13124 * 180.02562 * 19 18 8 21 21 C 1.34254 * 125.03630 * 179.97438 * 2 1 3 22 22 C 1.50693 * 126.48929 * 0.02562 * 21 2 1 23 23 H 1.09004 * 109.46535 * 270.03736 * 1 2 3 24 24 H 1.09000 * 109.47418 * 30.03585 * 1 2 3 25 25 H 1.08999 * 109.47352 * 150.04465 * 1 2 3 26 26 H 1.07996 * 120.09194 * 180.02562 * 7 6 5 27 27 H 1.09001 * 109.47308 * 29.98722 * 9 8 7 28 28 H 1.09002 * 109.47353 * 149.99660 * 9 8 7 29 29 H 0.96995 * 120.00385 * 179.97438 * 13 12 10 30 30 H 1.08010 * 119.67708 * 180.26386 * 18 8 7 31 31 H 1.08997 * 109.46885 * 270.01715 * 22 21 2 32 32 H 1.08994 * 109.47579 * 30.02358 * 22 21 2 33 33 H 1.09006 * 109.47229 * 150.02729 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2923 1.1202 0.0000 4 1 1.9622 2.0322 -0.0004 5 6 3.6220 0.7593 0.0006 6 6 3.6706 -0.6460 0.0004 7 6 4.9043 -1.3008 0.0014 8 6 6.0601 -0.5721 0.0019 9 6 7.3902 -1.2805 0.0024 10 6 7.8330 -1.5165 1.4235 11 1 7.2131 -1.1868 2.2440 12 6 9.0291 -2.1542 1.6759 13 7 9.7838 -2.5561 0.6767 14 14 9.5776 -2.4474 3.4373 15 1 8.5702 -3.2846 4.1367 16 1 10.8883 -3.1454 3.4379 17 1 9.7108 -1.1446 4.1377 18 6 6.0192 0.8153 0.0021 19 6 4.8119 1.4832 0.0012 20 9 4.7840 2.8339 0.0008 21 6 2.2777 -1.0993 0.0005 22 6 1.8002 -2.5285 0.0006 23 1 -0.3632 0.0007 1.0277 24 1 -0.3634 0.8896 -0.5144 25 1 -0.3634 -0.8904 -0.5131 26 1 4.9445 -2.3800 0.0008 27 1 7.2927 -2.2369 -0.5113 28 1 8.1295 -0.6659 -0.5111 29 1 10.6254 -3.0044 0.8543 30 1 6.9415 1.3775 -0.0019 31 1 1.6844 -2.8728 1.0283 32 1 0.8414 -2.5914 -0.5139 33 1 2.5296 -3.1554 -0.5125 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261091776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:51 Heat of formation + Delta-G solvation = -30.397326 kcal Electronic energy + Delta-G solvation = -17120.958611 eV Core-core repulsion = 14252.781648 eV Total energy + Delta-G solvation = -2868.176963 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.90650 -42.24046 -38.56242 -35.16234 -34.02238 -32.53877 -31.32566 -29.63379 -27.99397 -26.82587 -25.11178 -22.73733 -22.02262 -19.98065 -18.96249 -18.48577 -17.78093 -16.89252 -16.82361 -16.53123 -16.13539 -15.59113 -14.98422 -14.51666 -14.43915 -14.02738 -13.66142 -13.57072 -13.51807 -13.38464 -13.12114 -12.84837 -12.67835 -12.51951 -12.44626 -12.22631 -12.04712 -11.50929 -11.32640 -10.58342 -10.30570 -9.06852 -8.44027 -8.15421 -6.30971 0.01254 0.56414 1.41188 1.43759 1.52037 1.63014 2.05947 2.41100 2.82937 3.12418 3.22919 3.68270 3.86752 4.02740 4.24713 4.35941 4.47006 4.48763 4.73691 4.78443 4.91816 4.95338 5.01702 5.15015 5.16777 5.21968 5.35301 5.36947 5.40234 5.71992 5.76124 5.87358 6.00395 6.12204 6.23235 6.64490 6.80564 7.37201 8.91161 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.005899 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.582301 B = 4745.711809 C = 5328.309369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.093 3.907 3 N -0.581 5.581 4 H 0.426 0.574 5 C 0.037 3.963 6 C -0.087 4.087 7 C -0.094 4.094 8 C -0.059 4.059 9 C 0.063 3.937 10 C -0.530 4.530 11 H 0.053 0.947 12 C 0.008 3.992 13 N -0.929 5.929 14 Si 0.963 3.037 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.270 1.270 18 C -0.140 4.140 19 C 0.077 3.923 20 F -0.147 7.147 21 C -0.201 4.201 22 C -0.072 4.072 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.122 0.878 27 H 0.010 0.990 28 H 0.006 0.994 29 H 0.266 0.734 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.020 4.836 -1.340 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.015 4.015 3 N -0.186 5.186 4 H 0.266 0.734 5 C -0.070 4.070 6 C -0.092 4.092 7 C -0.113 4.113 8 C -0.061 4.061 9 C 0.026 3.974 10 C -0.568 4.568 11 H 0.071 0.929 12 C -0.191 4.191 13 N -0.569 5.569 14 Si 0.788 3.212 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.195 1.195 18 C -0.160 4.160 19 C 0.056 3.944 20 F -0.126 7.126 21 C -0.208 4.208 22 C -0.129 4.129 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.140 0.860 27 H 0.028 0.972 28 H 0.025 0.975 29 H 0.075 0.925 30 H 0.149 0.851 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.942 4.923 -1.388 20.587 hybrid contribution 1.144 0.603 0.678 1.460 sum -18.798 5.527 -0.710 19.606 Atomic orbital electron populations 1.20637 0.83927 1.05329 1.04535 1.20777 0.95107 0.84219 1.01413 1.41546 1.02242 1.09258 1.65575 0.73435 1.17986 0.84885 0.94330 1.09782 1.19279 0.94359 0.91087 1.04459 1.20203 0.89907 0.99862 1.01332 1.19656 0.96511 0.92627 0.97282 1.18048 0.88748 0.94165 0.96444 1.21347 1.05008 1.38027 0.92417 0.92907 1.25874 0.96447 0.95091 1.01662 1.70060 1.13306 1.40447 1.33041 0.85531 0.77621 0.78626 0.79472 1.19236 1.20405 1.19521 1.20757 0.95931 0.94768 1.04564 1.16562 0.91810 0.75819 1.10258 1.91412 1.97350 1.29043 1.94749 1.20383 0.88880 0.96930 1.14590 1.20138 1.01461 0.89112 1.02185 0.88959 0.89591 0.87962 0.86049 0.97150 0.97522 0.92521 0.85145 0.91518 0.89136 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 10.18 71.23 0.72 -0.26 16 2 C 0.09 2.10 7.08 40.87 0.29 2.39 16 3 N -0.58 -14.84 6.07 -175.78 -1.07 -15.91 16 4 H 0.43 8.18 8.96 -92.71 -0.83 7.35 16 5 C 0.04 1.30 7.26 39.04 0.28 1.59 16 6 C -0.09 -3.18 6.35 -20.20 -0.13 -3.31 16 7 C -0.09 -3.98 9.67 22.24 0.22 -3.76 16 8 C -0.06 -2.77 5.03 -20.11 -0.10 -2.87 16 9 C 0.06 3.44 5.08 29.10 0.15 3.59 16 10 C -0.53 -30.84 9.09 25.60 0.23 -30.60 16 11 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 12 C 0.01 0.44 5.46 84.66 0.46 0.90 16 13 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 14 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 C -0.14 -6.02 9.64 22.34 0.22 -5.81 16 19 C 0.08 2.94 7.32 22.46 0.16 3.10 16 20 F -0.15 -5.14 17.27 44.97 0.78 -4.37 16 21 C -0.20 -5.64 6.31 -18.63 -0.12 -5.76 16 22 C -0.07 -1.55 10.17 71.23 0.72 -0.83 16 23 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.10 0.87 7.04 -2.39 -0.02 0.85 16 26 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 27 H 0.01 0.59 8.07 -2.39 -0.02 0.57 16 28 H 0.01 0.37 8.08 -2.39 -0.02 0.36 16 29 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.13 5.51 8.06 -2.91 -0.02 5.49 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.34 7.05 -2.39 -0.02 1.32 16 33 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -68.77 290.09 5.43 -63.34 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.30 Total: 7.77 kcal Atomic # 6 Polarization: -44.76 SS G_CDS: 3.11 Total: -41.64 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -0.78 Total: -71.93 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.78 Total: -4.37 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -68.77 5.43 -63.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.942 kcal (2) G-P(sol) polarization free energy of solvation -68.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds