Wall clock time and date at job start Mon Mar 30 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35982 * 116.99503 * 2 1 4 4 C 1.39189 * 119.92240 * 359.97438 * 3 2 1 5 5 C 1.37778 * 120.63461 * 179.97438 * 4 3 2 6 6 C 1.38924 * 120.03718 * 0.04157 * 5 4 3 7 7 O 1.34922 * 133.33583 * 180.34223 * 6 5 4 8 8 C 1.34425 * 110.88544 * 180.10053 * 7 6 5 9 9 C 1.50706 * 124.92568 * 179.81474 * 8 7 6 10 10 H 1.08995 * 109.47217 * 199.69992 * 9 8 7 11 11 N 1.46903 * 109.46711 * 319.69927 * 9 8 7 12 12 C 1.50703 * 109.46981 * 79.69633 * 9 8 7 13 13 H 1.07999 * 119.99681 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99656 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99751 * 180.02562 * 14 12 9 16 16 Si 1.86802 * 120.00126 * 0.02562 * 14 12 9 17 17 H 1.48495 * 109.47379 * 89.99763 * 16 14 12 18 18 H 1.48505 * 109.46825 * 209.99955 * 16 14 12 19 19 H 1.48501 * 109.47117 * 329.99731 * 16 14 12 20 20 C 1.34000 * 110.15775 * 359.55161 * 8 7 6 21 21 C 1.40448 * 119.40973 * 359.97438 * 6 5 4 22 22 C 1.38166 * 119.91709 * 179.97438 * 3 2 1 23 23 H 1.09009 * 109.47390 * 60.00490 * 1 2 3 24 24 H 1.09003 * 109.46758 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47565 * 299.99996 * 1 2 3 26 26 H 1.07994 * 119.68343 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.97993 * 180.02562 * 5 4 3 28 28 H 1.00903 * 111.00084 * 59.99990 * 11 9 8 29 29 H 1.00900 * 110.99996 * 183.95037 * 11 9 8 30 30 H 0.96995 * 120.00011 * 180.02562 * 15 14 12 31 31 H 1.07994 * 126.90940 * 180.28372 * 20 8 7 32 32 H 1.08000 * 120.22524 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2117 0.0000 4 6 1.2865 2.3779 -0.0005 5 6 1.8965 3.6132 0.0000 6 6 3.2828 3.7042 0.0002 7 8 4.1425 4.7441 0.0065 8 6 5.4158 4.3132 0.0013 9 6 6.6292 5.2071 0.0019 10 1 7.4946 4.6452 -0.3492 11 7 6.3944 6.3518 -0.8883 12 6 6.8866 5.7035 1.4014 13 1 6.2368 5.4015 2.2095 14 6 7.9516 6.5431 1.6500 15 7 8.1765 6.9759 2.8713 16 14 9.0750 7.0659 0.2521 17 1 8.5543 8.3142 -0.3610 18 1 10.4423 7.3062 0.7793 19 1 9.1214 5.9928 -0.7734 20 6 5.4500 2.9736 0.0011 21 6 4.0511 2.5285 0.0004 22 6 3.4261 1.2821 0.0005 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.2084 2.3139 -0.0014 27 1 1.2967 4.5113 0.0000 28 1 5.5965 6.8891 -0.5837 29 1 7.2170 6.9323 -0.9554 30 1 8.9255 7.5669 3.0462 31 1 6.3298 2.3473 0.0017 32 1 4.0166 0.3778 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261093860.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:30 Heat of formation + Delta-G solvation = -3.061816 kcal Electronic energy + Delta-G solvation = -17184.046715 eV Core-core repulsion = 14304.682320 eV Total energy + Delta-G solvation = -2879.364395 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.88858 -39.49985 -36.35878 -35.06354 -32.34942 -31.81477 -29.96900 -28.71265 -27.10642 -26.17180 -23.47979 -22.11904 -21.10343 -20.14153 -17.83526 -17.23200 -17.05559 -16.11286 -15.80547 -15.56394 -15.20580 -14.70692 -14.28704 -13.89213 -13.31023 -12.97947 -12.88393 -12.46976 -12.30132 -12.16748 -11.92201 -11.82666 -11.09378 -10.96992 -10.70191 -10.51534 -10.47352 -9.74392 -9.69622 -8.90596 -7.97881 -7.72921 -7.48613 -6.35288 -4.41940 1.21761 1.67717 3.00763 3.05902 3.17897 3.19877 3.21469 3.38867 3.95657 4.11342 4.79487 4.89105 4.95775 5.00901 5.04538 5.22430 5.31086 5.34127 5.59957 5.68645 5.84384 5.99981 6.14101 6.32604 6.39076 6.49985 6.64941 6.83665 6.93419 7.21777 7.43437 7.74096 7.94090 8.11043 8.30692 8.70458 9.19761 10.76919 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.054262 B = 0.004871 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.888986 B = 5746.633630 C = 5784.409777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.102 3.898 4 C -0.192 4.192 5 C -0.064 4.064 6 C 0.011 3.989 7 O -0.183 6.183 8 C 0.132 3.868 9 C 0.242 3.758 10 H 0.077 0.923 11 N -0.849 5.849 12 C -0.557 4.557 13 H 0.080 0.920 14 C 0.078 3.922 15 N -0.881 5.881 16 Si 0.872 3.128 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.257 1.257 20 C -0.253 4.253 21 C -0.075 4.075 22 C -0.118 4.118 23 H 0.053 0.947 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.340 0.660 29 H 0.323 0.677 30 H 0.270 0.730 31 H 0.154 0.846 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.007 -9.042 -6.573 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.058 3.942 4 C -0.211 4.211 5 C -0.082 4.082 6 C -0.036 4.036 7 O -0.084 6.084 8 C 0.083 3.917 9 C 0.132 3.868 10 H 0.094 0.906 11 N -0.383 5.383 12 C -0.596 4.596 13 H 0.098 0.902 14 C -0.127 4.127 15 N -0.518 5.518 16 Si 0.700 3.300 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.182 1.182 20 C -0.273 4.273 21 C -0.076 4.076 22 C -0.137 4.137 23 H 0.072 0.928 24 H 0.114 0.886 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.152 0.848 29 H 0.139 0.861 30 H 0.080 0.920 31 H 0.172 0.828 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.995 -9.390 -7.017 16.772 hybrid contribution 0.636 0.944 0.413 1.211 sum -11.359 -8.446 -6.604 15.620 Atomic orbital electron populations 1.22996 0.78889 1.03530 1.01214 1.86055 1.20923 1.26844 1.89555 1.18596 0.91787 0.83948 0.99862 1.20810 0.99599 0.91075 1.09597 1.19596 0.89261 0.97893 1.01483 1.19569 0.91849 0.85722 1.06506 1.84027 1.15173 1.33471 1.75702 1.22899 0.82694 0.93731 0.92410 1.18381 0.86945 0.88417 0.93010 0.90561 1.59641 1.09300 1.13913 1.55465 1.21505 1.14564 1.30417 0.93121 0.90205 1.24971 0.96594 0.95280 0.95830 1.69873 1.29575 1.32740 1.19561 0.87021 0.80611 0.79960 0.82423 1.19784 1.21301 1.18177 1.21977 0.94889 0.93961 1.16469 1.19683 0.93729 0.92728 1.01489 1.19510 0.90961 0.96667 1.06529 0.92844 0.88578 0.92796 0.84877 0.85104 0.84796 0.86052 0.92025 0.82795 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.18 10.49 -19.68 -0.21 -4.38 16 3 C 0.10 1.52 6.68 -39.25 -0.26 1.26 16 4 C -0.19 -2.60 9.01 -39.40 -0.36 -2.96 16 5 C -0.06 -0.98 10.05 -39.50 -0.40 -1.38 16 6 C 0.01 0.21 7.41 -38.50 -0.29 -0.08 16 7 O -0.18 -3.96 10.41 3.65 0.04 -3.93 16 8 C 0.13 2.92 6.01 -35.80 -0.21 2.71 16 9 C 0.24 5.67 2.68 -70.01 -0.19 5.48 16 10 H 0.08 1.76 7.18 -51.93 -0.37 1.39 16 11 N -0.85 -18.60 9.13 -6.65 -0.06 -18.66 16 12 C -0.56 -15.18 9.29 -34.44 -0.32 -15.50 16 13 H 0.08 2.43 7.98 -52.49 -0.42 2.01 16 14 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 15 N -0.88 -25.78 13.96 55.43 0.77 -25.01 16 16 Si 0.87 19.94 24.61 -169.99 -4.18 15.75 16 17 H -0.27 -5.95 7.01 56.52 0.40 -5.56 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 20 C -0.25 -5.10 10.99 -37.61 -0.41 -5.52 16 21 C -0.08 -1.43 6.39 -105.16 -0.67 -2.10 16 22 C -0.12 -1.94 10.03 -39.16 -0.39 -2.34 16 23 H 0.05 0.39 7.65 -51.92 -0.40 -0.01 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.40 7.65 -51.93 -0.40 0.01 16 26 H 0.13 1.34 6.26 -52.49 -0.33 1.01 16 27 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.34 7.28 8.84 -39.29 -0.35 6.93 16 29 H 0.32 7.00 4.29 -39.29 -0.17 6.83 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.15 2.76 8.06 -52.49 -0.42 2.33 16 32 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 273.57 15.07 4.12 4.12 Total: -1.00 -30.40 273.57 -5.42 -35.82 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -3.29 Total: 13.43 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.61 Total: -17.14 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.71 Total: -43.67 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.17 Total: -8.31 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.18 Total: 15.75 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.40 -5.42 -35.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261093860.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.758 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds