Wall clock time and date at job start Mon Mar 30 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35982 * 116.99503 * 2 1 4 4 C 1.39189 * 119.92240 * 359.97438 * 3 2 1 5 5 C 1.37778 * 120.63461 * 179.97438 * 4 3 2 6 6 C 1.38924 * 120.03718 * 0.04157 * 5 4 3 7 7 O 1.34922 * 133.33583 * 180.34223 * 6 5 4 8 8 C 1.34425 * 110.88544 * 180.10053 * 7 6 5 9 9 C 1.50706 * 124.92568 * 179.81474 * 8 7 6 10 10 H 1.08995 * 109.47217 * 199.69992 * 9 8 7 11 11 N 1.46903 * 109.46711 * 319.69927 * 9 8 7 12 12 C 1.50703 * 109.46981 * 79.69633 * 9 8 7 13 13 H 1.07999 * 119.99681 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99656 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99751 * 180.02562 * 14 12 9 16 16 Si 1.86802 * 120.00126 * 0.02562 * 14 12 9 17 17 H 1.48495 * 109.47379 * 89.99763 * 16 14 12 18 18 H 1.48505 * 109.46825 * 209.99955 * 16 14 12 19 19 H 1.48501 * 109.47117 * 329.99731 * 16 14 12 20 20 C 1.34000 * 110.15775 * 359.55161 * 8 7 6 21 21 C 1.40448 * 119.40973 * 359.97438 * 6 5 4 22 22 C 1.38166 * 119.91709 * 179.97438 * 3 2 1 23 23 H 1.09009 * 109.47390 * 60.00490 * 1 2 3 24 24 H 1.09003 * 109.46758 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47565 * 299.99996 * 1 2 3 26 26 H 1.07994 * 119.68343 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.97993 * 180.02562 * 5 4 3 28 28 H 1.00903 * 111.00084 * 59.99990 * 11 9 8 29 29 H 1.00900 * 110.99996 * 183.95037 * 11 9 8 30 30 H 0.96995 * 120.00011 * 180.02562 * 15 14 12 31 31 H 1.07994 * 126.90940 * 180.28372 * 20 8 7 32 32 H 1.08000 * 120.22524 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2117 0.0000 4 6 1.2865 2.3779 -0.0005 5 6 1.8965 3.6132 0.0000 6 6 3.2828 3.7042 0.0002 7 8 4.1425 4.7441 0.0065 8 6 5.4158 4.3132 0.0013 9 6 6.6292 5.2071 0.0019 10 1 7.4946 4.6452 -0.3492 11 7 6.3944 6.3518 -0.8883 12 6 6.8866 5.7035 1.4014 13 1 6.2368 5.4015 2.2095 14 6 7.9516 6.5431 1.6500 15 7 8.1765 6.9759 2.8713 16 14 9.0750 7.0659 0.2521 17 1 8.5543 8.3142 -0.3610 18 1 10.4423 7.3062 0.7793 19 1 9.1214 5.9928 -0.7734 20 6 5.4500 2.9736 0.0011 21 6 4.0511 2.5285 0.0004 22 6 3.4261 1.2821 0.0005 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.2084 2.3139 -0.0014 27 1 1.2967 4.5113 0.0000 28 1 5.5965 6.8891 -0.5837 29 1 7.2170 6.9323 -0.9554 30 1 8.9255 7.5669 3.0462 31 1 6.3298 2.3473 0.0017 32 1 4.0166 0.3778 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261093860.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:30 Heat of formation + Delta-G solvation = -25.400369 kcal Electronic energy + Delta-G solvation = -17185.015387 eV Core-core repulsion = 14304.682320 eV Total energy + Delta-G solvation = -2880.333068 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.34052 -40.58441 -37.65706 -36.81198 -34.12320 -33.50612 -31.18689 -30.13221 -28.18359 -27.84069 -25.08095 -23.50534 -22.49152 -21.67238 -19.29604 -18.87305 -18.46186 -17.73368 -17.07912 -16.76971 -16.46601 -16.20904 -16.10837 -15.21454 -14.82079 -14.33551 -14.20544 -13.97735 -13.75823 -13.65983 -13.27386 -13.04734 -12.85747 -12.59166 -12.26708 -11.75771 -11.74570 -11.67566 -11.08887 -10.97172 -9.70229 -9.06989 -8.95742 -8.46426 -6.59648 -0.07965 0.39786 1.25370 1.32789 1.42141 1.47469 1.84762 2.17503 2.34241 2.67970 2.85533 3.48882 3.72065 3.91029 3.93350 4.18447 4.28834 4.37967 4.45460 4.47621 4.55417 4.73867 4.78879 4.89429 5.09009 5.17223 5.19961 5.28943 5.46914 5.52579 5.89375 6.16515 6.29946 6.42188 6.46240 6.54284 7.06575 8.69839 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.054262 B = 0.004871 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.888986 B = 5746.633630 C = 5784.409777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.110 3.890 4 C -0.172 4.172 5 C -0.067 4.067 6 C -0.020 4.020 7 O -0.203 6.203 8 C 0.092 3.908 9 C 0.250 3.750 10 H 0.082 0.918 11 N -0.838 5.838 12 C -0.564 4.564 13 H 0.028 0.972 14 C 0.024 3.976 15 N -0.932 5.932 16 Si 0.941 3.059 17 H -0.251 1.251 18 H -0.285 1.285 19 H -0.239 1.239 20 C -0.249 4.249 21 C -0.098 4.098 22 C -0.132 4.132 23 H 0.069 0.931 24 H 0.120 0.880 25 H 0.066 0.934 26 H 0.177 0.823 27 H 0.157 0.843 28 H 0.342 0.658 29 H 0.325 0.675 30 H 0.274 0.726 31 H 0.168 0.832 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.732 -10.071 -8.350 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.065 3.935 4 C -0.190 4.190 5 C -0.085 4.085 6 C -0.067 4.067 7 O -0.104 6.104 8 C 0.043 3.957 9 C 0.140 3.860 10 H 0.100 0.900 11 N -0.371 5.371 12 C -0.604 4.604 13 H 0.046 0.954 14 C -0.177 4.177 15 N -0.569 5.569 16 Si 0.764 3.236 17 H -0.176 1.176 18 H -0.212 1.212 19 H -0.162 1.162 20 C -0.268 4.268 21 C -0.100 4.100 22 C -0.151 4.151 23 H 0.088 0.912 24 H 0.138 0.862 25 H 0.085 0.915 26 H 0.195 0.805 27 H 0.174 0.826 28 H 0.154 0.846 29 H 0.142 0.858 30 H 0.083 0.917 31 H 0.186 0.814 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.752 -10.439 -8.807 19.382 hybrid contribution 0.898 1.065 1.046 1.742 sum -12.855 -9.373 -7.761 17.701 Atomic orbital electron populations 1.23414 0.76129 1.05795 1.02578 1.86065 1.23710 1.25758 1.88990 1.18712 0.91442 0.85241 0.98110 1.21293 1.01629 0.89634 1.06466 1.20052 0.87867 0.99867 1.00737 1.20180 0.93187 0.85199 1.08117 1.83933 1.15265 1.34755 1.76497 1.22674 0.82915 0.94217 0.95850 1.18140 0.88205 0.89016 0.90662 0.90010 1.59600 1.09420 1.13637 1.54470 1.21650 1.13890 1.30782 0.94038 0.95393 1.25900 0.98145 0.94956 0.98677 1.70028 1.30719 1.33937 1.22266 0.85911 0.77880 0.80698 0.79099 1.17628 1.21199 1.16218 1.22294 0.96396 0.93625 1.14519 1.19799 0.93092 0.93857 1.03206 1.19687 0.92308 0.96090 1.06981 0.91235 0.86171 0.91497 0.80547 0.82575 0.84630 0.85783 0.91719 0.81433 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -7.54 10.49 -93.34 -0.98 -8.52 16 3 C 0.11 2.98 6.68 22.48 0.15 3.13 16 4 C -0.17 -4.04 9.01 22.39 0.20 -3.84 16 5 C -0.07 -1.93 10.05 22.33 0.22 -1.71 16 6 C -0.02 -0.78 7.41 22.97 0.17 -0.61 16 7 O -0.20 -9.07 10.41 -9.85 -0.10 -9.17 16 8 C 0.09 4.22 6.01 24.72 0.15 4.37 16 9 C 0.25 11.92 2.68 43.43 0.12 12.04 16 10 H 0.08 3.77 7.18 -2.39 -0.02 3.75 16 11 N -0.84 -36.37 9.13 -174.94 -1.60 -37.97 16 12 C -0.56 -32.12 9.29 25.60 0.24 -31.88 16 13 H 0.03 1.82 7.98 -2.91 -0.02 1.80 16 14 C 0.02 1.33 5.47 84.65 0.46 1.79 16 15 N -0.93 -56.43 13.96 21.45 0.30 -56.13 16 16 Si 0.94 41.00 24.61 68.60 1.69 42.69 16 17 H -0.25 -10.11 7.01 99.48 0.70 -9.42 16 18 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 20 C -0.25 -10.28 10.99 23.55 0.26 -10.03 16 21 C -0.10 -3.76 6.39 -20.21 -0.13 -3.89 16 22 C -0.13 -4.22 10.03 22.54 0.23 -3.99 16 23 H 0.07 0.66 7.65 -2.38 -0.02 0.65 16 24 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.68 7.65 -2.39 -0.02 0.66 16 26 H 0.18 2.57 6.26 -2.91 -0.02 2.55 16 27 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.34 14.73 8.84 -89.69 -0.79 13.94 16 29 H 0.33 13.58 4.29 -89.69 -0.39 13.19 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.53 16 31 H 0.17 6.12 8.06 -2.91 -0.02 6.10 16 32 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -69.20 273.57 2.41 -66.79 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -0.08 Total: 35.63 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 3.18 Total: -33.33 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -1.30 Total: -94.10 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -1.08 Total: -17.69 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.69 Total: 42.69 kcal Total: -69.20 2.41 -66.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261093860.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.391 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds