Wall clock time and date at job start Mon Mar 30 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35975 * 116.99762 * 2 1 4 4 C 1.39191 * 119.92213 * 0.02562 * 3 2 1 5 5 C 1.37778 * 120.63918 * 179.97438 * 4 3 2 6 6 C 1.38923 * 120.03263 * 359.97438 * 5 4 3 7 7 O 1.34923 * 133.33786 * 179.97438 * 6 5 4 8 8 C 1.34432 * 110.88534 * 180.02562 * 7 6 5 9 9 C 1.50700 * 124.92093 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47210 * 160.02303 * 9 8 7 11 11 N 1.46899 * 109.47483 * 40.01972 * 9 8 7 12 12 C 1.50702 * 109.46869 * 280.02010 * 9 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.33998 * 110.15596 * 0.26514 * 8 7 6 21 21 C 1.40448 * 119.41021 * 0.02562 * 6 5 4 22 22 C 1.38159 * 119.91914 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.46868 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47415 * 300.00012 * 1 2 3 25 25 H 1.09006 * 109.47163 * 60.00202 * 1 2 3 26 26 H 1.08004 * 119.68038 * 359.95715 * 4 3 2 27 27 H 1.08001 * 119.98278 * 180.02562 * 5 4 3 28 28 H 1.00902 * 111.00292 * 176.04974 * 11 9 8 29 29 H 1.00903 * 111.00048 * 300.00270 * 11 9 8 30 30 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 31 31 H 1.08000 * 126.90157 * 179.69466 * 20 8 7 32 32 H 1.07999 * 120.22787 * 0.04765 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2866 2.3779 0.0005 5 6 1.8966 3.6132 0.0011 6 6 3.2829 3.7041 0.0016 7 8 4.1427 4.7439 0.0018 8 6 5.4160 4.3129 0.0018 9 6 6.6293 5.2068 0.0025 10 1 7.4947 4.6445 0.3535 11 7 6.3944 6.3507 0.8936 12 6 6.8874 5.7044 -1.3964 13 1 6.2375 5.4039 -2.2050 14 6 7.9495 6.5485 -1.6429 15 7 8.7405 6.9147 -0.6582 16 14 8.2647 7.1714 -3.3754 17 1 7.0824 7.9347 -3.8498 18 1 9.4575 8.0561 -3.3739 19 1 8.5052 6.0186 -4.2800 20 6 5.4501 2.9734 -0.0041 21 6 4.0512 2.5284 0.0011 22 6 3.4261 1.2820 0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 0.2085 2.3138 0.0003 27 1 1.2968 4.5114 0.0019 28 1 7.2169 6.9311 0.9616 29 1 5.5966 6.8884 0.5892 30 1 9.4880 7.5082 -0.8317 31 1 6.3299 2.3471 -0.0102 32 1 4.0167 0.3778 0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261093861.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:33 Heat of formation + Delta-G solvation = -14.677816 kcal Electronic energy + Delta-G solvation = -17142.782652 eV Core-core repulsion = 14262.914549 eV Total energy + Delta-G solvation = -2879.868103 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.79118 -39.45587 -36.27021 -34.78680 -32.27593 -31.28918 -29.89184 -28.45753 -27.06867 -26.01195 -23.39288 -22.09178 -21.01351 -20.11222 -17.77937 -17.01734 -16.76418 -15.93874 -15.74399 -15.22125 -15.16862 -14.45800 -14.09722 -13.73638 -13.24487 -12.92018 -12.85068 -12.27227 -12.24009 -12.02946 -11.60716 -11.45562 -11.02646 -10.96805 -10.68199 -10.47734 -10.17828 -10.09435 -9.61205 -8.79773 -7.74456 -7.62152 -7.31883 -6.23639 -4.41643 1.27904 1.72847 3.10334 3.19462 3.24093 3.25983 3.29312 3.47876 4.00975 4.24335 4.84911 4.97447 5.01139 5.04998 5.06274 5.27670 5.35749 5.42594 5.71372 5.78984 6.09382 6.20383 6.37726 6.44019 6.51414 6.70297 6.74110 7.08087 7.16436 7.48936 7.61239 7.79870 7.98653 8.46773 8.73930 8.96458 9.30601 10.74274 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.043530 B = 0.004870 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.083030 B = 5748.410836 C = 5870.227805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.102 3.898 4 C -0.195 4.195 5 C -0.064 4.064 6 C 0.007 3.993 7 O -0.184 6.184 8 C 0.130 3.870 9 C 0.273 3.727 10 H 0.075 0.925 11 N -0.850 5.850 12 C -0.554 4.554 13 H 0.060 0.940 14 C 0.070 3.930 15 N -0.892 5.892 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.274 1.274 20 C -0.263 4.263 21 C -0.074 4.074 22 C -0.120 4.120 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.361 0.639 29 H 0.320 0.680 30 H 0.270 0.730 31 H 0.153 0.847 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.782 -8.383 1.248 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.057 3.943 4 C -0.213 4.213 5 C -0.083 4.083 6 C -0.040 4.040 7 O -0.085 6.085 8 C 0.080 3.920 9 C 0.163 3.837 10 H 0.093 0.907 11 N -0.380 5.380 12 C -0.593 4.593 13 H 0.078 0.922 14 C -0.133 4.133 15 N -0.530 5.530 16 Si 0.732 3.268 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.282 4.282 21 C -0.075 4.075 22 C -0.139 4.139 23 H 0.114 0.886 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.178 0.822 29 H 0.129 0.871 30 H 0.080 0.920 31 H 0.170 0.830 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.713 -8.731 1.880 15.536 hybrid contribution 0.204 0.879 -1.878 2.083 sum -12.509 -7.852 0.002 14.769 Atomic orbital electron populations 1.22987 0.78954 1.03471 1.01185 1.86051 1.20870 1.26907 1.89598 1.18589 0.91788 0.83906 0.99986 1.20789 0.99518 0.91103 1.09929 1.19586 0.89315 0.97817 1.01571 1.19601 0.91871 0.85915 1.06600 1.84059 1.15398 1.33418 1.75635 1.23652 0.82897 0.94264 0.91150 1.17954 0.84885 0.88505 0.92367 0.90737 1.59446 1.10855 1.14671 1.53073 1.21685 1.13488 1.30020 0.94133 0.92221 1.24987 0.94876 0.95486 0.97976 1.69716 1.16967 1.34747 1.31548 0.86434 0.77768 0.78853 0.83737 1.20040 1.20968 1.19928 1.21990 0.94661 0.94169 1.17397 1.19723 0.93893 0.92668 1.01232 1.19506 0.90929 0.96684 1.06733 0.88620 0.92847 0.92863 0.84980 0.85217 0.82179 0.87054 0.92010 0.82971 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.29 10.49 -19.66 -0.21 -4.49 16 3 C 0.10 1.55 6.68 -39.26 -0.26 1.29 16 4 C -0.19 -2.71 9.01 -39.40 -0.36 -3.06 16 5 C -0.06 -1.02 10.05 -39.50 -0.40 -1.42 16 6 C 0.01 0.15 7.41 -38.50 -0.29 -0.14 16 7 O -0.18 -4.11 10.41 3.63 0.04 -4.07 16 8 C 0.13 2.98 6.01 -35.80 -0.22 2.76 16 9 C 0.27 6.79 3.15 -70.02 -0.22 6.57 16 10 H 0.08 1.94 8.12 -51.93 -0.42 1.52 16 11 N -0.85 -20.32 9.17 -6.65 -0.06 -20.38 16 12 C -0.55 -14.75 8.71 -34.44 -0.30 -15.05 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.07 1.84 5.38 -17.82 -0.10 1.75 16 15 N -0.89 -23.73 11.53 55.43 0.64 -23.09 16 16 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 20 C -0.26 -5.49 10.99 -37.61 -0.41 -5.91 16 21 C -0.07 -1.45 6.39 -105.16 -0.67 -2.12 16 22 C -0.12 -2.03 10.03 -39.16 -0.39 -2.43 16 23 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 25 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 26 H 0.13 1.37 6.26 -52.48 -0.33 1.05 16 27 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.36 8.98 7.07 -39.29 -0.28 8.70 16 29 H 0.32 7.49 8.83 -39.29 -0.35 7.14 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 32 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 280.04 15.07 4.22 4.22 Total: -1.00 -28.33 280.04 -6.41 -34.74 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -3.40 Total: 14.04 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.62 Total: -16.52 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.58 Total: -43.47 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.17 Total: -8.56 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.33 -6.41 -34.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261093861.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.064 kcal (2) G-P(sol) polarization free energy of solvation -28.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds