Wall clock time and date at job start Mon Mar 30 2020 06:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 N 1.46496 * 109.47070 * 120.00325 * 2 1 3 5 5 C 1.38279 * 125.61324 * 299.96941 * 4 2 1 6 6 C 1.39937 * 125.70162 * 0.05028 * 5 4 2 7 7 H 1.08003 * 119.99496 * 359.97438 * 6 5 4 8 8 C 1.40171 * 120.00648 * 179.97438 * 6 5 4 9 9 N 1.30757 * 119.99816 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46870 * 59.99317 * 10 8 6 12 12 H 1.48495 * 109.47390 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46519 * 299.99741 * 10 8 6 14 14 C 1.39134 * 108.60461 * 179.79697 * 5 4 2 15 15 C 1.40932 * 107.51008 * 0.36475 * 14 5 4 16 16 C 1.40555 * 133.07042 * 179.97438 * 15 14 5 17 17 C 1.36404 * 119.84452 * 179.68338 * 16 15 14 18 18 C 1.38950 * 120.61476 * 0.02562 * 17 16 15 19 19 C 1.38134 * 120.66797 * 359.97438 * 18 17 16 20 20 F 1.35093 * 120.07385 * 180.02562 * 19 18 17 21 21 C 1.38149 * 125.61275 * 120.00424 * 4 2 1 22 22 H 1.09000 * 109.47154 * 299.99849 * 1 2 3 23 23 H 1.09003 * 109.47707 * 59.99553 * 1 2 3 24 24 H 1.09003 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47154 * 240.00150 * 2 1 3 26 26 H 1.09000 * 109.47206 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47435 * 300.00191 * 3 2 1 28 28 H 1.09000 * 109.46939 * 60.00019 * 3 2 1 29 29 H 0.96998 * 120.00385 * 180.02562 * 9 8 6 30 30 H 1.07994 * 126.24222 * 180.26753 * 14 5 4 31 31 H 1.07998 * 120.07459 * 359.66171 * 16 15 14 32 32 H 1.07998 * 119.68643 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.66452 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7572 -0.3205 2.5026 6 6 0.9826 0.7744 2.9020 7 1 0.5295 1.4147 2.1596 8 6 0.7948 1.0401 4.2654 9 7 1.3430 0.2646 5.1642 10 14 -0.2386 2.5021 4.7984 11 1 -1.6178 2.3528 4.2686 12 1 -0.2823 2.5630 6.2815 13 1 0.3625 3.7525 4.2687 14 6 2.3885 -1.2219 3.3539 15 6 3.0610 -2.1644 2.5503 16 6 3.8533 -3.2869 2.8465 17 6 4.3799 -4.0326 1.8330 18 6 4.1412 -3.6932 0.5069 19 6 3.3660 -2.5949 0.1893 20 9 3.1412 -2.2761 -1.1041 21 6 2.8159 -1.8186 1.2044 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.2128 0.4483 6.1077 30 1 2.3684 -1.2019 4.4335 31 1 4.0450 -3.5581 3.8742 32 1 4.9887 -4.8944 2.0635 33 1 4.5661 -4.2941 -0.2835 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261094015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:32 Heat of formation + Delta-G solvation = -5.335198 kcal Electronic energy + Delta-G solvation = -18074.290313 eV Core-core repulsion = 15207.200126 eV Total energy + Delta-G solvation = -2867.090187 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.02171 -39.89130 -36.40475 -34.19384 -33.21269 -29.88890 -28.73603 -27.42937 -26.70655 -25.32834 -21.71577 -21.24007 -20.46807 -18.90849 -17.03682 -16.25362 -15.96631 -15.14583 -14.84910 -14.84815 -14.04629 -13.70024 -13.58076 -13.38132 -12.66063 -12.20160 -12.13666 -11.93723 -11.66676 -11.58291 -11.39389 -11.20181 -10.89270 -10.84877 -10.62453 -10.30360 -10.19166 -10.02071 -9.53806 -9.42725 -8.28194 -7.21766 -6.79894 -6.38990 -4.48236 2.12674 2.64602 2.93154 2.95524 2.97176 3.70670 3.96113 4.03399 4.88035 5.26076 5.26514 5.33534 5.64547 5.67389 5.75744 5.87105 6.01302 6.15562 6.25356 6.29624 6.32205 6.54574 6.56872 6.73638 6.83851 6.86370 6.97644 7.13378 7.41302 7.58998 7.67803 7.75787 7.89152 8.22194 8.54301 8.64680 8.87061 9.07271 10.03862 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.025211 B = 0.008970 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.341044 B = 3120.663727 C = 4045.250347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 C -0.167 4.167 4 N -0.501 5.501 5 C 0.275 3.725 6 C -0.437 4.437 7 H 0.086 0.914 8 C 0.072 3.928 9 N -0.774 5.774 10 Si 0.924 3.076 11 H -0.264 1.264 12 H -0.275 1.275 13 H -0.264 1.264 14 C -0.323 4.323 15 C -0.025 4.025 16 C -0.143 4.143 17 C -0.115 4.115 18 C -0.219 4.219 19 C 0.092 3.908 20 F -0.163 7.163 21 C 0.006 3.994 22 H 0.080 0.920 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.282 0.718 30 H 0.168 0.832 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 0.763 -4.024 4.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.039 3.961 3 C -0.225 4.225 4 N -0.191 5.191 5 C 0.170 3.830 6 C -0.470 4.470 7 H 0.104 0.896 8 C -0.148 4.148 9 N -0.399 5.399 10 Si 0.748 3.252 11 H -0.188 1.188 12 H -0.200 1.200 13 H -0.188 1.188 14 C -0.345 4.345 15 C -0.031 4.031 16 C -0.162 4.162 17 C -0.135 4.135 18 C -0.239 4.239 19 C 0.069 3.931 20 F -0.142 7.142 21 C -0.097 4.097 22 H 0.099 0.901 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.185 0.815 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.642 0.904 -4.064 4.212 hybrid contribution -0.410 0.587 -0.119 0.726 sum -1.052 1.491 -4.183 4.564 Atomic orbital electron populations 1.22247 0.95034 1.02348 1.02826 1.21013 0.94479 0.93318 0.87242 1.22247 1.01370 0.96014 1.02828 1.44371 1.45380 1.23811 1.05524 1.18142 0.92401 0.93266 0.79236 1.18859 1.26894 1.08817 0.92424 0.89637 1.25838 0.95218 0.97650 0.96112 1.69685 1.33733 1.33767 1.02705 0.86098 0.80285 0.80640 0.78207 1.18845 1.19966 1.18841 1.21839 1.12687 1.00007 1.00001 1.18396 0.97586 0.95697 0.91391 1.20183 1.01542 0.96431 0.98029 1.20028 1.01788 0.99929 0.91765 1.20157 1.07110 0.99529 0.97098 1.16732 1.03358 0.97692 0.75272 1.91303 1.93840 1.92802 1.36232 1.18150 1.03347 0.93512 0.94712 0.90125 0.92367 0.92792 0.89840 0.92794 0.92367 0.90124 0.90603 0.81484 0.87446 0.87501 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.18 37.15 0.34 -2.62 16 2 C 0.14 2.82 3.41 -67.94 -0.23 2.58 16 3 C -0.17 -2.96 9.18 37.16 0.34 -2.62 16 4 N -0.50 -11.88 2.70 -104.42 -0.28 -12.16 16 5 C 0.27 7.02 6.22 -83.99 -0.52 6.49 16 6 C -0.44 -10.53 7.36 -38.22 -0.28 -10.81 16 7 H 0.09 1.90 4.36 -52.48 -0.23 1.67 16 8 C 0.07 1.67 5.50 -17.28 -0.10 1.57 16 9 N -0.77 -18.72 10.18 55.56 0.57 -18.16 16 10 Si 0.92 17.30 29.56 -169.99 -5.03 12.28 16 11 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 12 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 13 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 14 C -0.32 -8.57 9.80 -38.23 -0.37 -8.94 16 15 C -0.03 -0.63 6.14 -106.92 -0.66 -1.29 16 16 C -0.14 -3.13 10.08 -39.37 -0.40 -3.53 16 17 C -0.12 -2.28 9.96 -39.98 -0.40 -2.68 16 18 C -0.22 -4.47 10.00 -39.36 -0.39 -4.86 16 19 C 0.09 2.07 7.32 -39.29 -0.29 1.78 16 20 F -0.16 -3.48 15.34 2.25 0.03 -3.45 16 21 C 0.01 0.15 6.82 -83.60 -0.57 -0.42 16 22 H 0.08 1.52 5.46 -51.93 -0.28 1.24 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.08 1.63 6.08 -51.93 -0.32 1.32 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.52 5.46 -51.93 -0.28 1.24 16 29 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 30 H 0.17 4.56 5.58 -52.49 -0.29 4.27 16 31 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 272.06 15.07 4.10 4.10 Total: -1.00 -26.57 272.06 -7.63 -34.20 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -3.50 Total: 8.51 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -3.53 Total: -25.32 kcal Atomic # 7 Polarization: -30.60 SS G_CDS: 0.28 Total: -30.31 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.03 Total: -3.45 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.57 -7.63 -34.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261094015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.863 kcal (2) G-P(sol) polarization free energy of solvation -26.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds