Wall clock time and date at job start Mon Mar 30 2020 06:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 N 1.46496 * 109.47070 * 120.00325 * 2 1 3 5 5 C 1.38279 * 125.61324 * 299.96941 * 4 2 1 6 6 C 1.39937 * 125.70162 * 0.05028 * 5 4 2 7 7 H 1.08003 * 119.99496 * 359.97438 * 6 5 4 8 8 C 1.40171 * 120.00648 * 179.97438 * 6 5 4 9 9 N 1.30757 * 119.99816 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46870 * 59.99317 * 10 8 6 12 12 H 1.48495 * 109.47390 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46519 * 299.99741 * 10 8 6 14 14 C 1.39134 * 108.60461 * 179.79697 * 5 4 2 15 15 C 1.40932 * 107.51008 * 0.36475 * 14 5 4 16 16 C 1.40555 * 133.07042 * 179.97438 * 15 14 5 17 17 C 1.36404 * 119.84452 * 179.68338 * 16 15 14 18 18 C 1.38950 * 120.61476 * 0.02562 * 17 16 15 19 19 C 1.38134 * 120.66797 * 359.97438 * 18 17 16 20 20 F 1.35093 * 120.07385 * 180.02562 * 19 18 17 21 21 C 1.38149 * 125.61275 * 120.00424 * 4 2 1 22 22 H 1.09000 * 109.47154 * 299.99849 * 1 2 3 23 23 H 1.09003 * 109.47707 * 59.99553 * 1 2 3 24 24 H 1.09003 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47154 * 240.00150 * 2 1 3 26 26 H 1.09000 * 109.47206 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47435 * 300.00191 * 3 2 1 28 28 H 1.09000 * 109.46939 * 60.00019 * 3 2 1 29 29 H 0.96998 * 120.00385 * 180.02562 * 9 8 6 30 30 H 1.07994 * 126.24222 * 180.26753 * 14 5 4 31 31 H 1.07998 * 120.07459 * 359.66171 * 16 15 14 32 32 H 1.07998 * 119.68643 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.66452 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7572 -0.3205 2.5026 6 6 0.9826 0.7744 2.9020 7 1 0.5295 1.4147 2.1596 8 6 0.7948 1.0401 4.2654 9 7 1.3430 0.2646 5.1642 10 14 -0.2386 2.5021 4.7984 11 1 -1.6178 2.3528 4.2686 12 1 -0.2823 2.5630 6.2815 13 1 0.3625 3.7525 4.2687 14 6 2.3885 -1.2219 3.3539 15 6 3.0610 -2.1644 2.5503 16 6 3.8533 -3.2869 2.8465 17 6 4.3799 -4.0326 1.8330 18 6 4.1412 -3.6932 0.5069 19 6 3.3660 -2.5949 0.1893 20 9 3.1412 -2.2761 -1.1041 21 6 2.8159 -1.8186 1.2044 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.2128 0.4483 6.1077 30 1 2.3684 -1.2019 4.4335 31 1 4.0450 -3.5581 3.8742 32 1 4.9887 -4.8944 2.0635 33 1 4.5661 -4.2941 -0.2835 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261094015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:32 Heat of formation + Delta-G solvation = -17.585729 kcal Electronic energy + Delta-G solvation = -18074.821536 eV Core-core repulsion = 15207.200126 eV Total energy + Delta-G solvation = -2867.621410 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.72665 -41.63438 -38.06507 -35.88895 -34.87402 -31.61943 -30.50899 -29.13332 -28.12643 -27.10772 -23.36123 -22.96525 -22.19778 -20.63940 -18.80709 -17.93070 -17.66662 -16.84869 -16.56673 -16.50376 -15.63432 -15.29073 -15.21001 -14.95357 -14.25944 -13.91165 -13.72532 -13.63446 -13.11661 -13.10074 -12.94871 -12.90240 -12.41623 -12.37777 -12.22717 -11.90567 -11.79611 -11.77106 -11.21580 -11.10849 -10.06239 -9.00559 -8.53628 -8.16610 -6.33799 0.38618 0.94560 1.41133 1.43241 1.54020 2.12619 2.19707 2.38704 3.13324 3.43447 3.56220 3.81280 4.05980 4.14304 4.23283 4.29461 4.65786 4.70888 4.71770 4.78347 4.82470 4.86882 4.96670 5.13928 5.19051 5.29631 5.37790 5.45326 5.67573 5.82992 5.95541 5.98181 6.11191 6.42909 6.74984 6.76600 7.06228 7.25160 8.33063 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.025211 B = 0.008970 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.341044 B = 3120.663727 C = 4045.250347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.131 3.869 3 C -0.158 4.158 4 N -0.506 5.506 5 C 0.256 3.744 6 C -0.456 4.456 7 H 0.100 0.900 8 C 0.029 3.971 9 N -0.807 5.807 10 Si 0.996 3.004 11 H -0.256 1.256 12 H -0.270 1.270 13 H -0.256 1.256 14 C -0.368 4.368 15 C -0.055 4.055 16 C -0.154 4.154 17 C -0.105 4.105 18 C -0.204 4.204 19 C 0.074 3.926 20 F -0.158 7.158 21 C -0.019 4.019 22 H 0.066 0.934 23 H 0.097 0.903 24 H 0.040 0.960 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.288 0.712 30 H 0.150 0.850 31 H 0.120 0.880 32 H 0.152 0.848 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 0.873 -5.348 5.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.030 3.970 3 C -0.216 4.216 4 N -0.196 5.196 5 C 0.150 3.850 6 C -0.488 4.488 7 H 0.117 0.883 8 C -0.188 4.188 9 N -0.432 5.432 10 Si 0.816 3.184 11 H -0.181 1.181 12 H -0.194 1.194 13 H -0.180 1.180 14 C -0.391 4.391 15 C -0.061 4.061 16 C -0.173 4.173 17 C -0.125 4.125 18 C -0.224 4.224 19 C 0.052 3.948 20 F -0.137 7.137 21 C -0.122 4.122 22 H 0.085 0.915 23 H 0.116 0.884 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.167 0.833 31 H 0.138 0.862 32 H 0.170 0.830 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.709 1.001 -5.416 5.553 hybrid contribution -0.284 0.409 0.231 0.549 sum -0.993 1.410 -5.185 5.464 Atomic orbital electron populations 1.22184 0.93515 1.01870 1.04031 1.21348 0.95781 0.94073 0.85841 1.22184 1.00478 0.94908 1.04033 1.44612 1.45228 1.23828 1.05963 1.18419 0.92759 0.93676 0.80120 1.19223 1.27205 1.08912 0.93477 0.88268 1.26862 0.95983 1.00241 0.95755 1.69799 1.34778 1.35410 1.03250 0.85018 0.78582 0.76920 0.77864 1.18053 1.19437 1.18046 1.21817 1.15386 1.02208 0.99652 1.18718 0.98747 0.96841 0.91781 1.20506 1.01246 0.95918 0.99638 1.20491 1.00817 1.00344 0.90807 1.20678 1.04974 0.98293 0.98454 1.16992 1.04159 0.98414 0.75246 1.91304 1.93899 1.92885 1.35617 1.18533 1.04152 0.94372 0.95192 0.91463 0.88450 0.94100 0.89709 0.94102 0.88450 0.91461 0.90082 0.83331 0.86227 0.83042 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.46 9.18 71.98 0.66 -4.80 16 2 C 0.13 5.14 3.41 44.99 0.15 5.29 16 3 C -0.16 -5.46 9.18 71.98 0.66 -4.80 16 4 N -0.51 -24.58 2.70 -484.27 -1.31 -25.88 16 5 C 0.26 13.64 6.22 38.75 0.24 13.88 16 6 C -0.46 -22.53 7.36 23.15 0.17 -22.36 16 7 H 0.10 4.45 4.36 -2.91 -0.01 4.44 16 8 C 0.03 1.35 5.50 85.32 0.47 1.82 16 9 N -0.81 -40.65 10.18 21.87 0.22 -40.43 16 10 Si 1.00 35.35 29.56 68.60 2.03 37.38 16 11 H -0.26 -8.73 7.11 99.48 0.71 -8.03 16 12 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 13 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 14 C -0.37 -20.62 9.80 23.15 0.23 -20.39 16 15 C -0.06 -2.87 6.14 -21.35 -0.13 -3.00 16 16 C -0.15 -6.72 10.08 22.41 0.23 -6.49 16 17 C -0.11 -3.87 9.96 22.01 0.22 -3.65 16 18 C -0.20 -7.75 10.00 22.42 0.22 -7.53 16 19 C 0.07 3.27 7.32 22.46 0.16 3.44 16 20 F -0.16 -6.55 15.34 44.97 0.69 -5.86 16 21 C -0.02 -0.94 6.82 39.07 0.27 -0.67 16 22 H 0.07 2.50 5.46 -2.39 -0.01 2.49 16 23 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 3.25 6.08 -2.39 -0.01 3.24 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.07 2.50 5.46 -2.39 -0.01 2.49 16 29 H 0.29 13.10 8.29 -92.71 -0.77 12.33 16 30 H 0.15 8.71 5.58 -2.91 -0.02 8.69 16 31 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 32 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -59.93 272.06 6.32 -53.61 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 1.13 Total: 30.45 kcal Atomic # 6 Polarization: -52.82 SS G_CDS: 3.55 Total: -49.27 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -1.09 Total: -66.31 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.69 Total: -5.86 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 2.03 Total: 37.38 kcal Total: -59.93 6.32 -53.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261094015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.029 kcal (2) G-P(sol) polarization free energy of solvation -59.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds