Wall clock time and date at job start Mon Mar 30 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35981 * 117.00471 * 2 1 4 4 C 1.39231 * 119.86990 * 359.97438 * 3 2 1 5 5 C 1.37729 * 120.55750 * 179.97438 * 4 3 2 6 6 C 1.38963 * 120.00942 * 359.97438 * 5 4 3 7 7 O 1.34936 * 133.29637 * 180.02562 * 6 5 4 8 8 N 1.41341 * 109.32573 * 179.75811 * 7 6 5 9 9 C 1.29738 * 109.73921 * 0.42803 * 8 7 6 10 10 C 1.50700 * 126.28775 * 179.85124 * 9 8 7 11 11 H 1.09004 * 109.47545 * 179.68711 * 10 9 8 12 12 C 1.53003 * 109.47387 * 299.68937 * 10 9 8 13 13 C 1.50700 * 109.47256 * 59.69075 * 10 9 8 14 14 H 1.08000 * 120.00000 * 334.49915 * 13 10 9 15 15 C 1.37882 * 120.00093 * 154.50599 * 13 10 9 16 16 N 1.31509 * 119.99818 * 6.53428 * 15 13 10 17 17 Si 1.86803 * 119.99992 * 186.54370 * 15 13 10 18 18 H 1.48500 * 109.46835 * 269.99859 * 17 15 13 19 19 H 1.48497 * 109.47135 * 29.99216 * 17 15 13 20 20 H 1.48499 * 109.47092 * 149.99616 * 17 15 13 21 21 C 1.40410 * 119.62361 * 0.02562 * 6 5 4 22 22 C 1.38048 * 119.88026 * 179.97438 * 3 2 1 23 23 H 1.09004 * 109.47287 * 300.00292 * 1 2 3 24 24 H 1.09003 * 109.47110 * 59.99897 * 1 2 3 25 25 H 1.08999 * 109.47157 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.72354 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.99203 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.46619 * 295.39064 * 12 10 9 29 29 H 1.09000 * 109.47039 * 55.38679 * 12 10 9 30 30 H 1.08991 * 109.47102 * 175.39076 * 12 10 9 31 31 H 0.96996 * 120.00410 * 355.09639 * 16 15 13 32 32 H 1.08001 * 120.18002 * 0.02736 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2855 2.3776 -0.0005 5 6 1.8961 3.6121 0.0000 6 6 3.2829 3.7016 0.0016 7 8 4.1431 4.7413 0.0029 8 7 5.4689 4.2514 0.0099 9 6 5.4567 2.9541 0.0038 10 6 6.6630 2.0508 0.0049 11 1 6.3379 1.0104 0.0043 12 6 7.5050 2.3228 -1.2433 13 6 7.4895 2.3180 1.2364 14 1 7.4419 3.2825 1.7200 15 6 8.3066 1.3311 1.7458 16 7 8.4642 0.2033 1.0879 17 14 9.1896 1.5958 3.3706 18 1 10.5146 2.2169 3.1183 19 1 8.3793 2.4919 4.2340 20 1 9.3767 0.2891 4.0508 21 6 4.0541 2.5283 0.0021 22 6 3.4251 1.2808 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2074 2.3135 -0.0005 27 1 1.2971 4.5107 -0.0009 28 1 6.9351 2.0517 -2.1320 29 1 7.7615 3.3814 -1.2849 30 1 8.4181 1.7290 -1.2020 31 1 7.9516 0.0365 0.2815 32 1 4.0142 0.3756 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261094260.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:40 Heat of formation + Delta-G solvation = -6.624062 kcal Electronic energy + Delta-G solvation = -17431.104233 eV Core-core repulsion = 14551.585367 eV Total energy + Delta-G solvation = -2879.518866 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.77793 -40.57570 -37.41655 -37.30745 -34.56718 -32.16875 -31.36888 -30.51192 -27.97025 -27.08062 -25.01424 -24.10533 -23.27113 -21.23009 -19.42440 -19.06575 -17.97136 -17.47769 -17.07102 -16.62168 -16.49743 -15.73992 -15.64108 -15.24010 -14.71675 -14.51790 -13.99010 -13.80845 -13.42732 -13.34224 -13.05773 -12.91756 -12.62848 -12.41533 -12.13364 -11.99084 -11.87711 -11.85192 -11.74977 -10.79734 -10.50373 -10.05890 -9.08458 -8.71692 -6.44290 -0.46929 0.20520 1.08113 1.51925 1.58347 1.62901 1.78649 2.27420 2.45963 2.52113 3.08391 3.22121 3.34131 3.54893 3.84296 4.00100 4.24885 4.34636 4.41618 4.47291 4.49440 4.66715 4.70531 4.79295 4.82551 4.92841 5.04001 5.07449 5.12603 5.30137 5.42109 5.82986 6.07769 6.28952 6.38453 6.51248 7.31373 8.68749 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023571 B = 0.006645 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.631880 B = 4212.887282 C = 4753.682204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.333 6.333 3 C 0.102 3.898 4 C -0.128 4.128 5 C -0.079 4.079 6 C 0.024 3.976 7 O -0.119 6.119 8 N -0.323 5.323 9 C 0.159 3.841 10 C 0.085 3.915 11 H 0.046 0.954 12 C -0.122 4.122 13 C -0.605 4.605 14 H 0.039 0.961 15 C -0.015 4.015 16 N -0.922 5.922 17 Si 1.114 2.886 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.275 1.275 21 C -0.175 4.175 22 C -0.098 4.098 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.193 0.807 27 H 0.178 0.822 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.264 0.736 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.573 0.487 -2.522 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.248 6.248 3 C 0.057 3.943 4 C -0.148 4.148 5 C -0.098 4.098 6 C -0.030 4.030 7 O -0.128 6.128 8 N -0.068 5.068 9 C -0.021 4.021 10 C 0.065 3.935 11 H 0.064 0.936 12 C -0.181 4.181 13 C -0.643 4.643 14 H 0.057 0.943 15 C -0.215 4.215 16 N -0.558 5.558 17 Si 0.936 3.064 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.200 1.200 21 C -0.178 4.178 22 C -0.118 4.118 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.136 0.864 26 H 0.210 0.790 27 H 0.195 0.805 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.776 0.802 -1.493 16.861 hybrid contribution -1.146 0.145 -1.156 1.634 sum -17.922 0.947 -2.649 18.141 Atomic orbital electron populations 1.23489 0.75622 1.06027 1.02989 1.86111 1.24144 1.25561 1.88935 1.18626 0.90730 0.85949 0.99030 1.21627 1.02289 0.89303 1.01548 1.20241 0.87183 1.00483 1.01906 1.20790 0.94239 0.86590 1.01335 1.89035 1.12658 1.28586 1.82567 1.79786 0.92017 1.12123 1.22902 1.25278 0.95671 0.92356 0.88795 1.17737 0.87187 0.92254 0.96292 0.93631 1.21763 0.99671 1.00561 0.96071 1.22004 1.29109 1.01051 1.12153 0.94285 1.27143 0.96706 0.92342 1.05343 1.70881 1.39160 1.26845 1.18889 0.82954 0.75738 0.76288 0.71438 1.19648 1.20630 1.19990 1.20722 0.90902 0.95594 1.10617 1.19849 0.93080 0.95944 1.02977 0.90904 0.90665 0.86371 0.79041 0.80465 0.93529 0.93996 0.93207 0.92512 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -8.03 10.49 -93.34 -0.98 -9.01 16 3 C 0.10 2.82 6.68 22.46 0.15 2.97 16 4 C -0.13 -2.67 9.01 22.39 0.20 -2.46 16 5 C -0.08 -1.97 10.06 22.32 0.22 -1.74 16 6 C 0.02 0.88 7.48 22.97 0.17 1.05 16 7 O -0.12 -5.16 12.07 28.72 0.35 -4.82 16 8 N -0.32 -15.95 12.81 -43.47 -0.56 -16.51 16 9 C 0.16 7.75 5.95 45.05 0.27 8.02 16 10 C 0.09 4.43 2.37 -12.29 -0.03 4.40 16 11 H 0.05 2.43 6.95 -2.38 -0.02 2.42 16 12 C -0.12 -5.83 9.04 71.98 0.65 -5.18 16 13 C -0.60 -34.79 8.29 25.60 0.21 -34.58 16 14 H 0.04 2.34 7.82 -2.91 -0.02 2.32 16 15 C -0.02 -0.85 5.45 84.66 0.46 -0.39 16 16 N -0.92 -54.19 13.63 21.45 0.29 -53.89 16 17 Si 1.11 50.66 29.91 68.60 2.05 52.72 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C -0.17 -7.30 6.32 -20.22 -0.13 -7.43 16 22 C -0.10 -3.55 10.03 22.58 0.23 -3.32 16 23 H 0.07 0.63 7.65 -2.39 -0.02 0.62 16 24 H 0.07 0.61 7.65 -2.39 -0.02 0.59 16 25 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.19 1.98 6.26 -2.91 -0.02 1.97 16 27 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 2.45 7.83 -2.39 -0.02 2.43 16 31 H 0.26 15.42 6.38 -92.71 -0.59 14.83 16 32 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -71.06 281.79 5.99 -65.08 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.31 Total: 3.83 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 3.52 Total: -37.40 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -0.26 Total: -70.40 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.63 Total: -13.83 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.05 Total: 52.72 kcal Total: -71.06 5.99 -65.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261094260.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.453 kcal (2) G-P(sol) polarization free energy of solvation -71.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds