Wall clock time and date at job start Mon Mar 30 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35950 * 116.99802 * 2 1 4 4 C 1.38309 * 120.07029 * 359.97438 * 3 2 1 5 5 C 1.38697 * 120.62465 * 179.97438 * 4 3 2 6 6 C 1.37733 * 120.32212 * 0.02843 * 5 4 3 7 7 C 1.39515 * 119.70451 * 359.97438 * 6 5 4 8 8 C 1.46776 * 134.29682 * 180.02562 * 7 6 5 9 9 C 1.34021 * 106.18886 * 179.23121 * 8 7 6 10 10 C 1.50696 * 124.93634 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47497 * 340.72950 * 10 9 8 12 12 N 1.46904 * 109.47082 * 220.73015 * 10 9 8 13 13 C 1.50705 * 109.47137 * 100.73245 * 10 9 8 14 14 H 1.08000 * 120.00018 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00048 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99743 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99977 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47256 * 90.00250 * 17 15 13 19 19 H 1.48508 * 109.46835 * 210.00143 * 17 15 13 20 20 H 1.48500 * 109.46914 * 329.99901 * 17 15 13 21 21 O 1.34423 * 110.12641 * 0.68984 * 9 8 7 22 22 C 1.34900 * 110.87533 * 359.37995 * 21 9 8 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00204 * 1 2 3 25 25 H 1.09001 * 109.46558 * 60.00252 * 1 2 3 26 26 H 1.07992 * 119.68606 * 0.02991 * 4 3 2 27 27 H 1.07996 * 119.83762 * 180.02562 * 5 4 3 28 28 H 1.08003 * 120.14456 * 179.97438 * 6 5 4 29 29 H 1.08003 * 126.91073 * 359.97438 * 8 7 6 30 30 H 1.00896 * 110.99908 * 176.04538 * 12 10 9 31 31 H 1.00900 * 111.00049 * 300.00326 * 12 10 9 32 32 H 0.97003 * 120.00208 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3722 -0.0005 5 6 1.9120 3.6141 0.0000 6 6 3.2861 3.7072 0.0005 7 6 4.0579 2.5449 0.0010 8 6 5.5000 2.2721 0.0020 9 6 5.6279 0.9381 0.0193 10 6 6.9400 0.1970 0.0272 11 1 7.7331 0.8583 -0.3216 12 7 6.8490 -0.9694 -0.8612 13 6 7.2491 -0.2622 1.4290 14 1 6.5641 -0.0392 2.2336 15 6 8.4064 -0.9669 1.6841 16 7 9.2402 -1.2389 0.7041 17 14 8.7891 -1.5367 3.4214 18 1 8.2134 -2.8883 3.6373 19 1 10.2610 -1.5894 3.6121 20 1 8.1975 -0.5852 4.3960 21 8 4.4157 0.3571 0.0138 22 6 3.4375 1.2860 0.0064 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 0.2161 2.3111 -0.0005 27 1 1.3124 4.5123 0.0000 28 1 3.7641 4.6757 0.0005 29 1 6.2979 3.0000 0.0022 30 1 7.7358 -1.4467 -0.9234 31 1 6.1203 -1.5984 -0.5587 32 1 10.0546 -1.7344 0.8837 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261096075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:10 Heat of formation + Delta-G solvation = -13.414257 kcal Electronic energy + Delta-G solvation = -17409.571887 eV Core-core repulsion = 14529.758576 eV Total energy + Delta-G solvation = -2879.813311 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.81649 -39.22714 -36.57575 -34.81483 -31.93356 -31.19854 -29.80571 -28.57385 -27.15902 -25.94341 -23.11453 -22.41140 -20.89300 -20.11350 -17.64646 -17.06069 -16.72788 -15.88266 -15.76349 -15.07082 -14.92045 -14.82051 -14.30848 -13.83239 -12.94131 -12.91548 -12.81049 -12.08283 -12.04462 -11.76328 -11.41116 -11.18785 -11.11867 -11.05608 -10.99261 -10.81124 -10.12156 -10.08404 -9.22895 -8.78621 -8.00106 -7.47277 -7.26243 -6.21663 -4.39436 1.38100 1.68670 3.11078 3.19216 3.26251 3.28670 3.32308 3.44978 4.03236 4.26100 4.93053 4.97781 5.05709 5.12370 5.13718 5.22486 5.44994 5.50383 5.58819 5.86486 6.01316 6.24992 6.39866 6.47350 6.60986 6.76734 6.84121 7.06083 7.16609 7.45964 7.63664 7.82800 8.02504 8.49440 8.76778 8.99663 9.32842 10.76248 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.029168 B = 0.005950 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.714070 B = 4704.480994 C = 4986.020450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.147 3.853 4 C -0.211 4.211 5 C -0.103 4.103 6 C -0.120 4.120 7 C -0.075 4.075 8 C -0.263 4.263 9 C 0.128 3.872 10 C 0.273 3.727 11 H 0.075 0.925 12 N -0.850 5.850 13 C -0.553 4.553 14 H 0.060 0.940 15 C 0.070 3.930 16 N -0.892 5.892 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.272 1.272 21 O -0.174 6.174 22 C 0.011 3.989 23 H 0.098 0.902 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.132 0.868 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.154 0.846 30 H 0.361 0.639 31 H 0.321 0.679 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 5.827 -1.320 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.101 3.899 4 C -0.230 4.230 5 C -0.121 4.121 6 C -0.138 4.138 7 C -0.076 4.076 8 C -0.282 4.282 9 C 0.078 3.922 10 C 0.163 3.837 11 H 0.093 0.907 12 N -0.381 5.381 13 C -0.592 4.592 14 H 0.078 0.922 15 C -0.133 4.133 16 N -0.530 5.530 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.197 1.197 21 O -0.074 6.074 22 C -0.037 4.037 23 H 0.116 0.884 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.171 0.829 30 H 0.178 0.822 31 H 0.130 0.870 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.525 5.782 -1.949 14.838 hybrid contribution 0.277 -0.543 1.876 1.973 sum -13.248 5.239 -0.073 14.247 Atomic orbital electron populations 1.23027 0.78749 1.03761 1.01104 1.86186 1.21013 1.26554 1.88901 1.17712 0.86891 0.85152 1.00118 1.20728 0.99230 0.91227 1.11850 1.20619 0.94069 0.96545 1.00893 1.20355 0.92900 0.96744 1.03843 1.19828 0.93694 0.92486 1.01628 1.22034 0.93357 0.95512 1.17340 1.23704 0.85049 0.92270 0.91141 1.17957 0.82923 0.90411 0.92386 0.90720 1.59437 1.12461 1.12830 1.53331 1.21727 1.06707 1.36642 0.94140 0.92177 1.24986 0.95216 0.95140 0.98007 1.69727 1.11942 1.39705 1.31621 0.86383 0.77494 0.79187 0.83785 1.20391 1.20861 1.19682 1.84104 1.13476 1.34888 1.74967 1.18788 0.87754 0.88065 1.09125 0.88389 0.92775 0.92764 0.85049 0.85751 0.85814 0.82854 0.82209 0.86955 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -5.24 10.50 -19.58 -0.21 -5.45 16 3 C 0.15 2.60 6.70 -39.15 -0.26 2.34 16 4 C -0.21 -3.00 9.03 -39.39 -0.36 -3.35 16 5 C -0.10 -1.40 10.03 -39.60 -0.40 -1.80 16 6 C -0.12 -1.89 10.10 -39.29 -0.40 -2.29 16 7 C -0.08 -1.47 6.39 -105.18 -0.67 -2.15 16 8 C -0.26 -5.53 10.99 -37.62 -0.41 -5.95 16 9 C 0.13 3.02 6.01 -35.79 -0.22 2.80 16 10 C 0.27 6.92 3.15 -70.01 -0.22 6.70 16 11 H 0.08 1.97 8.12 -51.93 -0.42 1.54 16 12 N -0.85 -20.83 9.17 -6.65 -0.06 -20.89 16 13 C -0.55 -14.97 8.71 -34.44 -0.30 -15.27 16 14 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 15 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 16 N -0.89 -23.98 11.54 55.43 0.64 -23.34 16 17 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 O -0.17 -4.13 10.41 3.72 0.04 -4.09 16 22 C 0.01 0.22 7.35 -38.38 -0.28 -0.06 16 23 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.13 1.41 6.26 -52.49 -0.33 1.08 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.15 2.88 8.06 -52.48 -0.42 2.46 16 30 H 0.36 9.14 7.08 -39.29 -0.28 8.87 16 31 H 0.32 7.79 8.83 -39.29 -0.35 7.44 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 280.08 15.07 4.22 4.22 Total: -1.00 -29.36 280.08 -6.41 -35.78 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -3.40 Total: 13.94 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.62 Total: -15.97 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.58 Total: -44.24 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.17 Total: -9.54 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.36 -6.41 -35.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.362 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds