Wall clock time and date at job start Mon Mar 30 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35950 * 116.99802 * 2 1 4 4 C 1.38309 * 120.07029 * 359.97438 * 3 2 1 5 5 C 1.38697 * 120.62465 * 179.97438 * 4 3 2 6 6 C 1.37733 * 120.32212 * 0.02843 * 5 4 3 7 7 C 1.39515 * 119.70451 * 359.97438 * 6 5 4 8 8 C 1.46776 * 134.29682 * 180.02562 * 7 6 5 9 9 C 1.34021 * 106.18886 * 179.23121 * 8 7 6 10 10 C 1.50696 * 124.93634 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47497 * 340.72950 * 10 9 8 12 12 N 1.46904 * 109.47082 * 220.73015 * 10 9 8 13 13 C 1.50705 * 109.47137 * 100.73245 * 10 9 8 14 14 H 1.08000 * 120.00018 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00048 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99743 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99977 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47256 * 90.00250 * 17 15 13 19 19 H 1.48508 * 109.46835 * 210.00143 * 17 15 13 20 20 H 1.48500 * 109.46914 * 329.99901 * 17 15 13 21 21 O 1.34423 * 110.12641 * 0.68984 * 9 8 7 22 22 C 1.34900 * 110.87533 * 359.37995 * 21 9 8 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00204 * 1 2 3 25 25 H 1.09001 * 109.46558 * 60.00252 * 1 2 3 26 26 H 1.07992 * 119.68606 * 0.02991 * 4 3 2 27 27 H 1.07996 * 119.83762 * 180.02562 * 5 4 3 28 28 H 1.08003 * 120.14456 * 179.97438 * 6 5 4 29 29 H 1.08003 * 126.91073 * 359.97438 * 8 7 6 30 30 H 1.00896 * 110.99908 * 176.04538 * 12 10 9 31 31 H 1.00900 * 111.00049 * 300.00326 * 12 10 9 32 32 H 0.97003 * 120.00208 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3722 -0.0005 5 6 1.9120 3.6141 0.0000 6 6 3.2861 3.7072 0.0005 7 6 4.0579 2.5449 0.0010 8 6 5.5000 2.2721 0.0020 9 6 5.6279 0.9381 0.0193 10 6 6.9400 0.1970 0.0272 11 1 7.7331 0.8583 -0.3216 12 7 6.8490 -0.9694 -0.8612 13 6 7.2491 -0.2622 1.4290 14 1 6.5641 -0.0392 2.2336 15 6 8.4064 -0.9669 1.6841 16 7 9.2402 -1.2389 0.7041 17 14 8.7891 -1.5367 3.4214 18 1 8.2134 -2.8883 3.6373 19 1 10.2610 -1.5894 3.6121 20 1 8.1975 -0.5852 4.3960 21 8 4.4157 0.3571 0.0138 22 6 3.4375 1.2860 0.0064 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 0.2161 2.3111 -0.0005 27 1 1.3124 4.5123 0.0000 28 1 3.7641 4.6757 0.0005 29 1 6.2979 3.0000 0.0022 30 1 7.7358 -1.4467 -0.9234 31 1 6.1203 -1.5984 -0.5587 32 1 10.0546 -1.7344 0.8837 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:09 Heat of formation + Delta-G solvation = -33.766020 kcal Electronic energy + Delta-G solvation = -17410.454405 eV Core-core repulsion = 14529.758576 eV Total energy + Delta-G solvation = -2880.695830 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.32810 -40.43279 -37.83761 -36.75452 -33.70644 -32.91696 -31.05200 -30.05354 -28.29346 -27.76936 -24.80278 -23.79080 -22.27307 -21.73450 -18.99136 -18.75826 -18.32383 -17.40280 -17.22561 -16.58316 -16.24870 -16.18056 -16.00891 -15.28688 -14.82652 -14.29058 -14.14954 -13.55812 -13.45515 -13.22203 -13.11396 -12.90990 -12.77711 -12.30534 -12.19400 -12.14286 -12.09466 -11.94927 -10.85812 -10.60805 -9.52543 -9.30646 -8.73856 -8.23387 -6.51036 0.04754 0.40182 1.35330 1.36066 1.46050 1.54717 1.87662 2.30807 2.33141 2.75482 2.94689 3.56487 3.90211 3.95374 4.19289 4.34257 4.37361 4.41942 4.43014 4.55797 4.61633 4.72637 4.79687 5.08773 5.19751 5.33615 5.43703 5.52471 5.53606 5.76082 5.86886 6.15390 6.42654 6.53516 6.72095 6.95435 7.24634 8.71907 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.029168 B = 0.005950 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.714070 B = 4704.480994 C = 4986.020450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.346 6.346 3 C 0.127 3.873 4 C -0.191 4.191 5 C -0.086 4.086 6 C -0.124 4.124 7 C -0.097 4.097 8 C -0.256 4.256 9 C 0.086 3.914 10 C 0.277 3.723 11 H 0.055 0.945 12 N -0.842 5.842 13 C -0.573 4.573 14 H 0.043 0.957 15 C 0.031 3.969 16 N -0.909 5.909 17 Si 0.966 3.034 18 H -0.274 1.274 19 H -0.272 1.272 20 H -0.275 1.275 21 O -0.204 6.204 22 C -0.031 4.031 23 H 0.114 0.886 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.175 0.825 27 H 0.175 0.825 28 H 0.151 0.849 29 H 0.167 0.833 30 H 0.354 0.646 31 H 0.320 0.680 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.103 7.506 -0.750 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.261 6.261 3 C 0.081 3.919 4 C -0.209 4.209 5 C -0.104 4.104 6 C -0.142 4.142 7 C -0.098 4.098 8 C -0.275 4.275 9 C 0.037 3.963 10 C 0.167 3.833 11 H 0.072 0.928 12 N -0.372 5.372 13 C -0.613 4.613 14 H 0.061 0.939 15 C -0.171 4.171 16 N -0.547 5.547 17 Si 0.791 3.209 18 H -0.200 1.200 19 H -0.196 1.196 20 H -0.199 1.199 21 O -0.105 6.105 22 C -0.078 4.078 23 H 0.133 0.867 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.192 0.808 27 H 0.193 0.807 28 H 0.169 0.831 29 H 0.185 0.815 30 H 0.170 0.830 31 H 0.129 0.871 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.069 7.470 -1.391 17.775 hybrid contribution 0.841 -0.981 1.656 2.101 sum -15.228 6.489 0.265 16.555 Atomic orbital electron populations 1.23428 0.75638 1.05694 1.02921 1.86143 1.24302 1.26683 1.88965 1.18075 0.86047 0.86822 1.00919 1.21327 1.01146 0.90057 1.08389 1.21241 0.93434 0.98141 0.97562 1.20797 0.93948 0.96435 1.03033 1.20058 0.92798 0.93691 1.03288 1.22336 0.95146 0.94864 1.15195 1.23335 0.84871 0.93055 0.95050 1.17679 0.83966 0.90138 0.91521 0.92753 1.59410 1.11885 1.12608 1.53252 1.21851 1.07039 1.37728 0.94655 0.93881 1.25701 0.94826 0.94910 1.01667 1.69800 1.12130 1.39661 1.33134 0.85435 0.77701 0.78536 0.79253 1.19959 1.19635 1.19942 1.83988 1.13967 1.36380 1.76195 1.19532 0.88931 0.88245 1.11104 0.86741 0.90886 0.90716 0.80773 0.80721 0.83098 0.81519 0.82992 0.87082 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.35 -11.35 10.50 -92.99 -0.98 -12.32 16 3 C 0.13 4.36 6.70 22.55 0.15 4.51 16 4 C -0.19 -4.61 9.03 22.40 0.20 -4.40 16 5 C -0.09 -1.91 10.03 22.26 0.22 -1.68 16 6 C -0.12 -3.54 10.10 22.46 0.23 -3.32 16 7 C -0.10 -3.81 6.39 -20.22 -0.13 -3.94 16 8 C -0.26 -11.18 10.99 23.54 0.26 -10.93 16 9 C 0.09 4.29 6.01 24.72 0.15 4.44 16 10 C 0.28 14.87 3.15 43.42 0.14 15.01 16 11 H 0.05 3.06 8.12 -2.39 -0.02 3.04 16 12 N -0.84 -43.58 9.17 -174.94 -1.60 -45.19 16 13 C -0.57 -32.49 8.71 25.60 0.22 -32.27 16 14 H 0.04 2.52 7.74 -2.91 -0.02 2.50 16 15 C 0.03 1.66 5.38 84.65 0.46 2.12 16 16 N -0.91 -49.92 11.54 21.45 0.25 -49.68 16 17 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 O -0.20 -10.23 10.41 -9.60 -0.10 -10.33 16 22 C -0.03 -1.34 7.35 23.05 0.17 -1.17 16 23 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 25 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 26 H 0.18 2.65 6.26 -2.91 -0.02 2.63 16 27 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 28 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 29 H 0.17 6.47 8.06 -2.91 -0.02 6.45 16 30 H 0.35 18.80 7.08 -89.70 -0.63 18.16 16 31 H 0.32 16.48 8.83 -89.69 -0.79 15.69 16 32 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -67.68 280.08 2.51 -65.17 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.26 Total: 37.21 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 3.18 Total: -30.22 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -1.36 Total: -94.87 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -1.08 Total: -22.65 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -67.68 2.51 -65.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.405 kcal (2) G-P(sol) polarization free energy of solvation -67.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds