Wall clock time and date at job start Mon Mar 30 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35957 * 116.99725 * 2 1 4 4 C 1.38308 * 120.06744 * 359.97438 * 3 2 1 5 5 C 1.38691 * 120.62547 * 179.72302 * 4 3 2 6 6 C 1.37742 * 120.32197 * 0.28325 * 5 4 3 7 7 C 1.39514 * 119.70131 * 359.97438 * 6 5 4 8 8 C 1.46774 * 134.29902 * 179.97438 * 7 6 5 9 9 C 1.33999 * 106.19170 * 180.02562 * 8 7 6 10 10 C 1.50706 * 124.93582 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.47081 * 19.99875 * 10 9 8 12 12 N 1.46902 * 109.47352 * 139.99664 * 10 9 8 13 13 C 1.50696 * 109.47326 * 260.00116 * 10 9 8 14 14 H 1.08006 * 119.99840 * 359.97438 * 13 10 9 15 15 C 1.37873 * 120.00326 * 179.97438 * 13 10 9 16 16 N 1.31509 * 119.99975 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 120.00065 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46907 * 90.00425 * 17 15 13 19 19 H 1.48497 * 109.46991 * 210.00214 * 17 15 13 20 20 H 1.48490 * 109.47110 * 330.00367 * 17 15 13 21 21 O 1.34417 * 110.13353 * 359.97438 * 9 8 7 22 22 C 1.34893 * 110.87574 * 0.02562 * 21 9 8 23 23 H 1.08999 * 109.47287 * 60.00142 * 1 2 3 24 24 H 1.09004 * 109.46531 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46950 * 300.00102 * 1 2 3 26 26 H 1.08002 * 119.69045 * 0.02562 * 4 3 2 27 27 H 1.08008 * 119.84160 * 180.26143 * 5 4 3 28 28 H 1.07995 * 120.14607 * 179.97438 * 6 5 4 29 29 H 1.08008 * 126.90579 * 0.02562 * 8 7 6 30 30 H 1.00894 * 111.00167 * 296.04992 * 12 10 9 31 31 H 1.00901 * 110.99502 * 60.00011 * 12 10 9 32 32 H 0.97000 * 120.00201 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3722 -0.0005 5 6 1.9118 3.6141 0.0052 6 6 3.2860 3.7073 0.0057 7 6 4.0578 2.5451 0.0009 8 6 5.4999 2.2722 -0.0006 9 6 5.6278 0.9384 -0.0065 10 6 6.9400 0.1972 -0.0095 11 1 7.7313 0.8579 0.3451 12 7 6.8445 -0.9713 0.8757 13 6 7.2564 -0.2584 -1.4106 14 1 6.5752 -0.0342 -2.2182 15 6 8.4155 -0.9616 -1.6617 16 7 9.2448 -1.2351 -0.6784 17 14 8.8073 -1.5270 -3.3985 18 1 9.5887 -0.4751 -4.0971 19 1 9.6025 -2.7799 -3.3436 20 1 7.5423 -1.7755 -4.1353 21 8 4.4157 0.3574 -0.0082 22 6 3.4375 1.2861 -0.0041 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2160 2.3111 -0.0005 27 1 1.3122 4.5124 0.0090 28 1 3.7639 4.6758 0.0098 29 1 6.2978 3.0003 0.0024 30 1 6.6969 -0.6887 1.8329 31 1 6.1174 -1.5995 0.5678 32 1 10.0604 -1.7295 -0.8550 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261096076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:13 Heat of formation + Delta-G solvation = -5.939267 kcal Electronic energy + Delta-G solvation = -17409.990989 eV Core-core repulsion = 14530.501818 eV Total energy + Delta-G solvation = -2879.489171 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.90614 -39.29757 -36.64836 -34.62810 -31.92402 -31.35043 -29.87465 -28.59899 -27.20252 -25.94938 -23.00574 -22.46474 -20.94814 -20.18418 -17.72277 -17.14124 -16.63324 -15.93816 -15.77360 -14.99201 -14.96053 -14.77515 -14.29871 -14.09696 -13.07119 -12.96981 -12.55947 -12.21293 -12.10808 -12.04624 -11.51557 -11.22409 -11.12131 -11.11043 -10.87953 -10.71177 -10.07077 -9.51945 -9.16362 -8.51774 -8.04469 -7.48340 -7.26517 -5.97735 -4.14104 1.30194 1.61134 3.01192 3.21913 3.31711 3.37055 3.38565 3.43893 3.95991 4.43438 4.87273 4.96795 5.06032 5.08775 5.15879 5.27882 5.40097 5.44128 5.51949 5.81251 6.00120 6.12726 6.24752 6.33590 6.52822 6.70431 6.78880 6.94524 7.13961 7.35352 7.81664 7.82384 7.99234 8.49231 8.88140 8.98975 9.54988 11.06449 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.029084 B = 0.005955 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.498171 B = 4700.553366 C = 4976.885661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.146 3.854 4 C -0.210 4.210 5 C -0.102 4.102 6 C -0.120 4.120 7 C -0.077 4.077 8 C -0.258 4.258 9 C 0.073 3.927 10 C 0.289 3.711 11 H 0.076 0.924 12 N -0.807 5.807 13 C -0.539 4.539 14 H 0.057 0.943 15 C 0.087 3.913 16 N -0.845 5.845 17 Si 0.892 3.108 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 O -0.180 6.180 22 C 0.009 3.991 23 H 0.054 0.946 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.132 0.868 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.154 0.846 30 H 0.303 0.697 31 H 0.328 0.672 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.714 6.786 2.532 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.101 3.899 4 C -0.229 4.229 5 C -0.121 4.121 6 C -0.138 4.138 7 C -0.079 4.079 8 C -0.278 4.278 9 C 0.021 3.979 10 C 0.179 3.821 11 H 0.093 0.907 12 N -0.332 5.332 13 C -0.578 4.578 14 H 0.076 0.924 15 C -0.121 4.121 16 N -0.479 5.479 17 Si 0.719 3.281 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.199 1.199 21 O -0.080 6.080 22 C -0.038 4.038 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.172 0.828 30 H 0.113 0.887 31 H 0.140 0.860 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.740 6.019 2.374 15.187 hybrid contribution -1.040 0.374 -0.806 1.368 sum -14.780 6.394 1.569 16.180 Atomic orbital electron populations 1.23035 0.78656 1.03824 1.01136 1.86185 1.21096 1.26524 1.88897 1.17720 0.86891 0.85189 1.00131 1.20746 0.99286 0.91220 1.11669 1.20641 0.94084 0.96583 1.00748 1.20374 0.92913 0.96779 1.03744 1.19888 0.93852 0.92478 1.01633 1.22165 0.93264 0.95801 1.16524 1.25550 0.86598 0.93485 0.92220 1.18348 0.81108 0.87692 0.94976 0.90677 1.59059 1.53418 1.17821 1.02924 1.20763 1.06796 1.39098 0.91105 0.92433 1.24904 0.95670 0.94853 0.96689 1.70084 1.10365 1.36957 1.30495 0.86620 0.78457 0.78241 0.84780 1.20544 1.21046 1.19882 1.84085 1.13563 1.35068 1.75284 1.18811 0.87746 0.88081 1.09192 0.92714 0.88330 0.92762 0.84986 0.85678 0.85768 0.82814 0.88693 0.85996 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -5.13 10.50 -19.61 -0.21 -5.33 16 3 C 0.15 2.53 6.70 -39.15 -0.26 2.27 16 4 C -0.21 -2.91 9.03 -39.39 -0.36 -3.26 16 5 C -0.10 -1.36 10.03 -39.60 -0.40 -1.75 16 6 C -0.12 -1.84 10.10 -39.29 -0.40 -2.24 16 7 C -0.08 -1.48 6.39 -105.18 -0.67 -2.15 16 8 C -0.26 -5.27 10.99 -37.62 -0.41 -5.68 16 9 C 0.07 1.66 6.00 -35.80 -0.21 1.44 16 10 C 0.29 7.20 3.05 -70.01 -0.21 6.99 16 11 H 0.08 1.95 8.12 -51.93 -0.42 1.53 16 12 N -0.81 -19.25 8.52 -6.65 -0.06 -19.30 16 13 C -0.54 -14.90 8.71 -34.44 -0.30 -15.20 16 14 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 15 C 0.09 2.39 5.39 -17.82 -0.10 2.29 16 16 N -0.85 -24.09 12.77 55.43 0.71 -23.39 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 O -0.18 -4.10 10.40 3.76 0.04 -4.06 16 22 C 0.01 0.19 7.35 -38.38 -0.28 -0.09 16 23 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 26 H 0.13 1.37 6.26 -52.49 -0.33 1.04 16 27 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 28 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.15 2.81 8.06 -52.48 -0.42 2.39 16 30 H 0.30 6.41 9.06 -39.29 -0.36 6.05 16 31 H 0.33 7.77 8.83 -39.29 -0.35 7.42 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 282.54 15.07 4.26 4.26 Total: -1.00 -31.08 282.54 -6.37 -37.45 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -3.48 Total: 10.19 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -2.61 Total: -16.10 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.65 Total: -42.69 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.17 Total: -9.40 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.08 -6.37 -37.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.508 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds