Wall clock time and date at job start Mon Mar 30 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35957 * 116.99725 * 2 1 4 4 C 1.38308 * 120.06744 * 359.97438 * 3 2 1 5 5 C 1.38691 * 120.62547 * 179.72302 * 4 3 2 6 6 C 1.37742 * 120.32197 * 0.28325 * 5 4 3 7 7 C 1.39514 * 119.70131 * 359.97438 * 6 5 4 8 8 C 1.46774 * 134.29902 * 179.97438 * 7 6 5 9 9 C 1.33999 * 106.19170 * 180.02562 * 8 7 6 10 10 C 1.50706 * 124.93582 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.47081 * 19.99875 * 10 9 8 12 12 N 1.46902 * 109.47352 * 139.99664 * 10 9 8 13 13 C 1.50696 * 109.47326 * 260.00116 * 10 9 8 14 14 H 1.08006 * 119.99840 * 359.97438 * 13 10 9 15 15 C 1.37873 * 120.00326 * 179.97438 * 13 10 9 16 16 N 1.31509 * 119.99975 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 120.00065 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46907 * 90.00425 * 17 15 13 19 19 H 1.48497 * 109.46991 * 210.00214 * 17 15 13 20 20 H 1.48490 * 109.47110 * 330.00367 * 17 15 13 21 21 O 1.34417 * 110.13353 * 359.97438 * 9 8 7 22 22 C 1.34893 * 110.87574 * 0.02562 * 21 9 8 23 23 H 1.08999 * 109.47287 * 60.00142 * 1 2 3 24 24 H 1.09004 * 109.46531 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46950 * 300.00102 * 1 2 3 26 26 H 1.08002 * 119.69045 * 0.02562 * 4 3 2 27 27 H 1.08008 * 119.84160 * 180.26143 * 5 4 3 28 28 H 1.07995 * 120.14607 * 179.97438 * 6 5 4 29 29 H 1.08008 * 126.90579 * 0.02562 * 8 7 6 30 30 H 1.00894 * 111.00167 * 296.04992 * 12 10 9 31 31 H 1.00901 * 110.99502 * 60.00011 * 12 10 9 32 32 H 0.97000 * 120.00201 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3722 -0.0005 5 6 1.9118 3.6141 0.0052 6 6 3.2860 3.7073 0.0057 7 6 4.0578 2.5451 0.0009 8 6 5.4999 2.2722 -0.0006 9 6 5.6278 0.9384 -0.0065 10 6 6.9400 0.1972 -0.0095 11 1 7.7313 0.8579 0.3451 12 7 6.8445 -0.9713 0.8757 13 6 7.2564 -0.2584 -1.4106 14 1 6.5752 -0.0342 -2.2182 15 6 8.4155 -0.9616 -1.6617 16 7 9.2448 -1.2351 -0.6784 17 14 8.8073 -1.5270 -3.3985 18 1 9.5887 -0.4751 -4.0971 19 1 9.6025 -2.7799 -3.3436 20 1 7.5423 -1.7755 -4.1353 21 8 4.4157 0.3574 -0.0082 22 6 3.4375 1.2861 -0.0041 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2160 2.3111 -0.0005 27 1 1.3122 4.5124 0.0090 28 1 3.7639 4.6758 0.0098 29 1 6.2978 3.0003 0.0024 30 1 6.6969 -0.6887 1.8329 31 1 6.1174 -1.5995 0.5678 32 1 10.0604 -1.7295 -0.8550 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:12 Heat of formation + Delta-G solvation = -27.947629 kcal Electronic energy + Delta-G solvation = -17410.945343 eV Core-core repulsion = 14530.501818 eV Total energy + Delta-G solvation = -2880.443525 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.37897 -40.47083 -37.87198 -36.53815 -33.75295 -33.02138 -31.08014 -30.03278 -28.31895 -27.78374 -24.66782 -23.82956 -22.30204 -21.78168 -19.01361 -18.72049 -18.33517 -17.27412 -17.24700 -16.52058 -16.29767 -16.19574 -16.00184 -15.63688 -14.50574 -14.38607 -14.19464 -13.81715 -13.44838 -13.25287 -13.16879 -12.77419 -12.69902 -12.32191 -12.22262 -12.17180 -12.06534 -11.47963 -10.65709 -10.59205 -9.49297 -9.17999 -8.76104 -8.07907 -6.31686 0.00088 0.36047 1.39890 1.41782 1.46800 1.54831 1.82612 2.27530 2.43344 2.71661 3.16237 3.57006 3.86625 3.92127 4.14418 4.27934 4.34885 4.39341 4.39466 4.47626 4.58550 4.70380 4.77641 5.06857 5.17101 5.24837 5.42314 5.50882 5.64728 5.76196 5.92164 6.07378 6.42417 6.53557 6.87980 7.06813 7.40628 8.95474 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.029084 B = 0.005955 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.498171 B = 4700.553366 C = 4976.885661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.346 6.346 3 C 0.126 3.874 4 C -0.190 4.190 5 C -0.086 4.086 6 C -0.124 4.124 7 C -0.099 4.099 8 C -0.250 4.250 9 C 0.037 3.963 10 C 0.295 3.705 11 H 0.056 0.944 12 N -0.813 5.813 13 C -0.557 4.557 14 H 0.041 0.959 15 C 0.043 3.957 16 N -0.873 5.873 17 Si 0.955 3.045 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.278 1.278 21 O -0.207 6.207 22 C -0.031 4.031 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.075 0.925 26 H 0.175 0.825 27 H 0.175 0.825 28 H 0.151 0.849 29 H 0.167 0.833 30 H 0.316 0.684 31 H 0.326 0.674 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.337 8.557 2.062 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.261 6.261 3 C 0.081 3.919 4 C -0.209 4.209 5 C -0.104 4.104 6 C -0.142 4.142 7 C -0.101 4.101 8 C -0.270 4.270 9 C -0.014 4.014 10 C 0.184 3.816 11 H 0.074 0.926 12 N -0.339 5.339 13 C -0.596 4.596 14 H 0.059 0.941 15 C -0.162 4.162 16 N -0.507 5.507 17 Si 0.780 3.220 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.203 1.203 21 O -0.109 6.109 22 C -0.078 4.078 23 H 0.091 0.909 24 H 0.133 0.867 25 H 0.093 0.907 26 H 0.192 0.808 27 H 0.193 0.807 28 H 0.169 0.831 29 H 0.184 0.816 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.375 7.806 1.911 18.241 hybrid contribution -0.471 -0.079 -0.617 0.781 sum -16.847 7.726 1.294 18.579 Atomic orbital electron populations 1.23430 0.75601 1.05722 1.02928 1.86143 1.24330 1.26658 1.88962 1.18080 0.86092 0.86818 1.00928 1.21337 1.01177 0.90079 1.08280 1.21254 0.93469 0.98154 0.97498 1.20809 0.93952 0.96495 1.02959 1.20109 0.93002 0.93656 1.03287 1.22440 0.94974 0.95199 1.14392 1.24939 0.86305 0.94095 0.96012 1.17910 0.82261 0.87634 0.93799 0.92611 1.58948 1.53413 1.17849 1.03677 1.20975 1.06835 1.39564 0.92180 0.94096 1.25618 0.95404 0.94804 1.00415 1.70182 1.10712 1.37537 1.32309 0.85641 0.78000 0.78139 0.80242 1.19454 1.20268 1.20286 1.83974 1.14010 1.36444 1.76447 1.19527 0.88891 0.88251 1.11116 0.90926 0.86715 0.90671 0.80788 0.80744 0.83127 0.81551 0.87294 0.86280 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.35 -11.04 10.50 -93.07 -0.98 -12.02 16 3 C 0.13 4.21 6.70 22.55 0.15 4.36 16 4 C -0.19 -4.46 9.03 22.39 0.20 -4.26 16 5 C -0.09 -1.85 10.03 22.26 0.22 -1.63 16 6 C -0.12 -3.44 10.10 22.46 0.23 -3.21 16 7 C -0.10 -3.77 6.39 -20.22 -0.13 -3.90 16 8 C -0.25 -10.56 10.99 23.54 0.26 -10.30 16 9 C 0.04 1.79 6.00 24.72 0.15 1.94 16 10 C 0.29 15.48 3.05 43.42 0.13 15.62 16 11 H 0.06 3.08 8.12 -2.39 -0.02 3.06 16 12 N -0.81 -40.78 8.52 -174.94 -1.49 -42.27 16 13 C -0.56 -32.12 8.71 25.60 0.22 -31.90 16 14 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 15 C 0.04 2.41 5.39 84.65 0.46 2.87 16 16 N -0.87 -50.93 12.77 21.44 0.27 -50.66 16 17 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 O -0.21 -9.98 10.40 -9.48 -0.10 -10.08 16 22 C -0.03 -1.29 7.35 23.05 0.17 -1.12 16 23 H 0.07 1.00 7.66 -2.39 -0.02 0.99 16 24 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.07 0.99 7.66 -2.39 -0.02 0.98 16 26 H 0.17 2.55 6.26 -2.91 -0.02 2.53 16 27 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 28 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.17 6.26 8.06 -2.91 -0.02 6.24 16 30 H 0.32 14.10 9.06 -89.70 -0.81 13.29 16 31 H 0.33 16.33 8.83 -89.69 -0.79 15.54 16 32 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -70.88 282.54 2.47 -68.42 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -0.44 Total: 30.15 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 3.17 Total: -30.13 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -1.22 Total: -92.93 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -1.08 Total: -22.10 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.88 2.47 -68.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.469 kcal (2) G-P(sol) polarization free energy of solvation -70.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds