Wall clock time and date at job start Mon Mar 30 2020 05:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35932 * 116.99848 * 2 1 4 4 C 1.39208 * 119.71503 * 359.97438 * 3 2 1 5 5 C 1.36665 * 120.35640 * 179.72389 * 4 3 2 6 6 C 1.39426 * 119.79309 * 0.25677 * 5 4 3 7 7 C 1.46839 * 134.28605 * 180.02562 * 6 5 4 8 8 C 1.33954 * 106.19387 * 180.02562 * 7 6 5 9 9 C 1.50697 * 124.92371 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47355 * 20.00005 * 9 8 7 11 11 N 1.46901 * 109.47311 * 140.00027 * 9 8 7 12 12 C 1.50703 * 109.47132 * 259.99874 * 9 8 7 13 13 H 1.08000 * 120.00042 * 359.97438 * 12 9 8 14 14 C 1.37881 * 119.99948 * 179.97438 * 12 9 8 15 15 N 1.31505 * 119.99920 * 179.97438 * 14 12 9 16 16 Si 1.86809 * 119.99981 * 0.02562 * 14 12 9 17 17 H 1.48500 * 109.46767 * 89.99751 * 16 14 12 18 18 H 1.48500 * 109.46980 * 209.99924 * 16 14 12 19 19 H 1.48501 * 109.46771 * 329.99850 * 16 14 12 20 20 O 1.34509 * 110.15540 * 359.97438 * 8 7 6 21 21 C 1.34815 * 110.88205 * 0.02562 * 20 8 7 22 22 C 1.38304 * 119.71858 * 180.23196 * 3 2 1 23 23 H 1.08996 * 109.47530 * 300.00588 * 1 2 3 24 24 H 1.09006 * 109.47098 * 60.00494 * 1 2 3 25 25 H 1.09001 * 109.46700 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.82451 * 0.02562 * 4 3 2 27 27 H 1.08010 * 120.10333 * 180.24026 * 5 4 3 28 28 H 1.08006 * 126.90655 * 359.97351 * 7 6 5 29 29 H 1.00910 * 110.99515 * 296.04329 * 11 9 8 30 30 H 1.00897 * 111.00284 * 59.99758 * 11 9 8 31 31 H 0.97004 * 120.00266 * 180.02562 * 15 14 12 32 32 H 1.08004 * 120.11314 * 0.04044 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2821 2.3749 -0.0005 5 6 1.8888 3.5994 0.0051 6 6 3.2806 3.6830 0.0061 7 6 4.2410 4.7937 0.0119 8 6 5.4584 4.2349 0.0090 9 6 6.7579 4.9980 0.0125 10 1 6.5824 6.0130 0.3688 11 7 7.7176 4.3268 0.8994 12 6 7.3159 5.0462 -1.3866 13 1 6.7830 4.5714 -2.1972 14 6 8.5067 5.6965 -1.6319 15 7 8.9938 5.7382 -2.8527 16 14 9.4288 6.5172 -0.2298 17 1 10.3717 5.5446 0.3787 18 1 10.1875 7.6824 -0.7512 19 1 8.4602 6.9768 0.7977 20 8 5.3529 2.8940 0.0027 21 6 4.0595 2.5138 0.0005 22 6 3.4276 1.2768 -0.0049 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2041 2.3096 -0.0005 27 1 1.2921 4.4997 0.0086 28 1 4.0120 5.8492 0.0165 29 1 7.3956 4.3387 1.8557 30 1 7.8972 3.3834 0.5901 31 1 9.8318 6.1954 -3.0253 32 1 4.0132 0.3693 -0.0093 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261096786.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:01 Heat of formation + Delta-G solvation = -6.815400 kcal Electronic energy + Delta-G solvation = -17197.213763 eV Core-core repulsion = 14317.686599 eV Total energy + Delta-G solvation = -2879.527163 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.00866 -39.64024 -36.49386 -34.91996 -32.17000 -31.68058 -30.42557 -28.65606 -27.21484 -26.16174 -23.31616 -22.18262 -21.16259 -20.23118 -17.96069 -17.08808 -16.56499 -16.35696 -15.91332 -15.36165 -15.25538 -14.80711 -14.28078 -13.97827 -13.53965 -13.30353 -12.68184 -12.37135 -12.28841 -12.23380 -11.96698 -11.74944 -11.03808 -10.80269 -10.74807 -10.57723 -10.03207 -9.51769 -9.19871 -8.63908 -8.42267 -7.92535 -7.39621 -6.10479 -4.23844 1.21261 1.53916 2.76933 2.93110 3.50696 3.55398 3.64146 3.67997 3.87985 4.55377 4.69595 4.88965 4.92507 4.97988 5.12780 5.17706 5.21129 5.27861 5.53423 5.73223 5.78120 5.95772 6.03344 6.24221 6.41978 6.48408 6.56689 6.68352 6.94302 7.30573 7.35425 7.63160 8.01742 8.18384 8.52850 8.87480 9.48624 10.98581 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.051832 B = 0.004933 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.077545 B = 5674.950913 C = 5718.360593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.135 3.865 4 C -0.219 4.219 5 C -0.040 4.040 6 C -0.149 4.149 7 C -0.235 4.235 8 C 0.062 3.938 9 C 0.254 3.746 10 H 0.077 0.923 11 N -0.839 5.839 12 C -0.528 4.528 13 H 0.075 0.925 14 C 0.086 3.914 15 N -0.892 5.892 16 Si 0.937 3.063 17 H -0.277 1.277 18 H -0.315 1.315 19 H -0.273 1.273 20 O -0.185 6.185 21 C 0.080 3.920 22 C -0.143 4.143 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.153 0.847 29 H 0.315 0.685 30 H 0.344 0.656 31 H 0.267 0.733 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.630 -6.907 7.867 18.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.090 3.910 4 C -0.238 4.238 5 C -0.058 4.058 6 C -0.150 4.150 7 C -0.254 4.254 8 C 0.012 3.988 9 C 0.144 3.856 10 H 0.095 0.905 11 N -0.368 5.368 12 C -0.566 4.566 13 H 0.093 0.907 14 C -0.119 4.119 15 N -0.528 5.528 16 Si 0.769 3.231 17 H -0.203 1.203 18 H -0.245 1.245 19 H -0.199 1.199 20 O -0.086 6.086 21 C 0.032 3.968 22 C -0.163 4.163 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.171 0.829 29 H 0.126 0.874 30 H 0.158 0.842 31 H 0.076 0.924 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.657 -6.669 7.521 17.773 hybrid contribution -0.708 -0.057 0.648 0.961 sum -15.365 -6.726 8.169 18.656 Atomic orbital electron populations 1.23031 0.78453 1.03701 1.01359 1.86033 1.21217 1.26684 1.89124 1.18263 0.90887 0.84121 0.97764 1.20762 0.99788 0.91975 1.11225 1.19999 0.92149 0.97203 0.96453 1.19983 0.94167 0.93382 1.07444 1.22112 0.90436 0.98744 1.14152 1.24522 0.99943 0.78903 0.95447 1.18728 0.79835 0.91515 0.95474 0.90549 1.59269 1.48564 1.24344 1.04645 1.20676 1.08015 1.37798 0.90115 0.90732 1.24976 0.96437 0.94498 0.96017 1.69936 1.20273 1.42164 1.20424 0.85863 0.79338 0.76986 0.80952 1.20324 1.24472 1.19870 1.84014 1.24731 1.24221 1.75650 1.19129 0.82562 0.94240 1.00912 1.18660 0.91094 0.94992 1.11517 0.92710 0.92648 0.88374 0.85274 0.85504 0.82921 0.87351 0.84249 0.92383 0.84649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.80 101.05 0.99 1.23 16 2 O -0.32 -4.02 10.49 -19.52 -0.20 -4.23 16 3 C 0.13 1.95 6.68 -39.20 -0.26 1.69 16 4 C -0.22 -2.86 8.96 -39.79 -0.36 -3.22 16 5 C -0.04 -0.58 10.04 -39.71 -0.40 -0.98 16 6 C -0.15 -2.68 6.40 -105.13 -0.67 -3.36 16 7 C -0.23 -4.52 10.99 -37.61 -0.41 -4.93 16 8 C 0.06 1.31 6.00 -35.82 -0.21 1.10 16 9 C 0.25 5.82 2.54 -70.02 -0.18 5.64 16 10 H 0.08 1.73 7.18 -51.93 -0.37 1.35 16 11 N -0.84 -17.51 6.75 -6.65 -0.04 -17.56 16 12 C -0.53 -14.69 9.29 -34.44 -0.32 -15.01 16 13 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 14 C 0.09 2.45 5.47 -17.82 -0.10 2.36 16 15 N -0.89 -27.07 13.96 55.43 0.77 -26.29 16 16 Si 0.94 23.08 26.03 -169.99 -4.43 18.66 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.32 -7.84 7.11 56.52 0.40 -7.43 16 19 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 20 O -0.19 -3.90 10.40 3.73 0.04 -3.86 16 21 C 0.08 1.52 7.41 -38.49 -0.29 1.23 16 22 C -0.14 -2.36 10.00 -39.31 -0.39 -2.76 16 23 H 0.05 0.37 7.64 -51.93 -0.40 -0.02 16 24 H 0.05 0.39 7.64 -51.93 -0.40 0.00 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.13 1.25 6.25 -52.49 -0.33 0.93 16 27 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 28 H 0.15 2.61 8.06 -52.48 -0.42 2.19 16 29 H 0.31 5.59 9.06 -39.29 -0.36 5.24 16 30 H 0.34 7.13 8.83 -39.29 -0.35 6.78 16 31 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.14 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 277.18 15.07 4.18 4.18 Total: -1.00 -31.87 277.18 -5.76 -37.63 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -3.47 Total: 8.49 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.60 Total: -17.01 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.73 Total: -43.85 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.17 Total: -8.09 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.43 Total: 18.66 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.87 -5.76 -37.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096786.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.813 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds