Wall clock time and date at job start Mon Mar 30 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34239 * 125.03423 * 2 1 4 4 C 1.46493 * 107.01351 * 179.97438 * 3 2 1 5 5 C 1.39671 * 133.97350 * 180.02562 * 4 3 2 6 6 C 1.37794 * 119.62480 * 179.97438 * 5 4 3 7 7 F 1.35097 * 119.82894 * 179.97438 * 6 5 4 8 8 C 1.39034 * 120.33398 * 0.02844 * 6 5 4 9 9 C 1.50698 * 119.67144 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47177 * 279.99510 * 9 8 6 11 11 H 1.07997 * 119.99805 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99838 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00449 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99781 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47002 * 59.99728 * 14 12 10 16 16 H 1.48495 * 109.46992 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46955 * 300.00040 * 14 12 10 18 18 C 1.37709 * 120.64865 * 359.96944 * 8 6 5 19 19 C 1.39091 * 119.95479 * 359.76146 * 18 8 6 20 20 N 1.36815 * 125.03768 * 179.97438 * 2 1 3 21 21 C 1.46506 * 125.06522 * 359.97438 * 20 2 1 22 22 H 1.09006 * 109.46563 * 270.03986 * 1 2 3 23 23 H 1.08992 * 109.47121 * 30.04360 * 1 2 3 24 24 H 1.09003 * 109.46736 * 150.04859 * 1 2 3 25 25 H 1.08001 * 126.49348 * 359.92396 * 3 2 1 26 26 H 1.07994 * 120.18682 * 359.97438 * 5 4 3 27 27 H 1.08997 * 109.47711 * 39.99873 * 9 8 6 28 28 H 1.09009 * 109.47116 * 159.99790 * 9 8 6 29 29 H 0.97000 * 120.00516 * 180.02562 * 13 12 10 30 30 H 1.08001 * 120.01720 * 180.02562 * 18 8 6 31 31 H 1.08999 * 109.46871 * 90.02679 * 21 20 2 32 32 H 1.08994 * 109.46947 * 210.02387 * 21 20 2 33 33 H 1.08997 * 109.47271 * 330.02903 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 3.6707 0.6460 0.0006 5 6 4.9038 1.3018 0.0014 6 6 6.0677 0.5641 0.0024 7 9 7.2627 1.1942 0.0025 8 6 6.0183 -0.8254 0.0020 9 6 7.3003 -1.6174 0.0026 10 6 7.8581 -1.6713 -1.3964 11 1 7.3365 -1.1807 -2.2049 12 6 9.0342 -2.3470 -1.6441 13 7 9.6695 -2.9440 -0.6595 14 14 9.7259 -2.4132 -3.3781 15 1 9.9972 -1.0336 -3.8558 16 1 10.9891 -3.1938 -3.3776 17 1 8.7414 -3.0644 -4.2792 18 6 4.8094 -1.4848 0.0014 19 6 3.6226 -0.7595 0.0060 20 7 2.2925 -1.1202 0.0005 21 6 1.7939 -2.4978 0.0017 22 1 -0.3633 0.0007 1.0278 23 1 -0.3633 0.8895 -0.5145 24 1 -0.3633 -0.8905 -0.5131 25 1 1.9354 2.1235 -0.0012 26 1 4.9449 2.3810 0.0011 27 1 8.0229 -1.1388 0.6636 28 1 7.1017 -2.6301 0.3538 29 1 10.4971 -3.4190 -0.8337 30 1 4.7829 -2.5645 0.0015 31 1 1.6703 -2.8403 -1.0257 32 1 2.5070 -3.1418 0.5160 33 1 0.8333 -2.5361 0.5154 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261098064.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:36 Heat of formation + Delta-G solvation = -16.819026 kcal Electronic energy + Delta-G solvation = -17247.814679 eV Core-core repulsion = 14380.226515 eV Total energy + Delta-G solvation = -2867.588163 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.60473 -42.24983 -38.29546 -35.35698 -33.97943 -32.65135 -31.19999 -29.82329 -27.38013 -26.75875 -24.63500 -23.10788 -22.03965 -20.23963 -18.59674 -18.22361 -17.87400 -16.92357 -16.55998 -16.44109 -16.11498 -15.58839 -15.09478 -14.44287 -14.22820 -14.04375 -13.90461 -13.77174 -13.54919 -13.40684 -13.22628 -13.10418 -12.79465 -12.66563 -12.52375 -12.08896 -11.87290 -11.43529 -11.28227 -10.62849 -10.48952 -8.86569 -8.50120 -8.19480 -6.35416 0.09330 0.51061 1.36840 1.41001 1.48986 1.75607 1.89982 2.38459 2.81046 3.08451 3.45374 3.70650 3.85981 3.99563 4.08851 4.32705 4.43785 4.48685 4.51309 4.61988 4.70876 4.84747 4.89569 5.02924 5.09524 5.14192 5.25362 5.27476 5.30550 5.69142 5.73394 5.79044 5.92431 6.11394 6.28043 6.47141 6.74181 7.32298 8.87548 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.030180 B = 0.005909 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.557575 B = 4737.615633 C = 5178.180501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.087 3.913 3 C -0.224 4.224 4 C -0.113 4.113 5 C -0.112 4.112 6 C 0.050 3.950 7 F -0.155 7.155 8 C -0.083 4.083 9 C 0.065 3.935 10 C -0.529 4.529 11 H 0.049 0.951 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.966 3.034 15 H -0.272 1.272 16 H -0.276 1.276 17 H -0.265 1.265 18 C -0.110 4.110 19 C 0.077 3.923 20 N -0.487 5.487 21 C 0.069 3.931 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.169 0.831 26 H 0.151 0.849 27 H 0.000 1.000 28 H 0.014 0.986 29 H 0.267 0.733 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.157 4.055 1.255 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.020 4.020 3 C -0.248 4.248 4 C -0.118 4.118 5 C -0.131 4.131 6 C 0.030 3.970 7 F -0.133 7.133 8 C -0.085 4.085 9 C 0.028 3.972 10 C -0.567 4.567 11 H 0.067 0.933 12 C -0.191 4.191 13 N -0.568 5.568 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.200 1.200 17 H -0.189 1.189 18 C -0.131 4.131 19 C -0.029 4.029 20 N -0.171 5.171 21 C -0.072 4.072 22 H 0.111 0.889 23 H 0.119 0.881 24 H 0.101 0.899 25 H 0.186 0.814 26 H 0.169 0.831 27 H 0.018 0.982 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.126 3.629 1.298 21.475 hybrid contribution 1.531 -0.177 -0.608 1.656 sum -19.596 3.452 0.690 19.909 Atomic orbital electron populations 1.20616 0.84114 1.05165 1.04470 1.21056 0.95417 0.84426 1.01081 1.21650 0.88287 0.99359 1.15498 1.19193 0.94129 0.92094 1.06369 1.20466 0.89021 1.00475 1.03177 1.17518 0.80727 0.90349 1.08445 1.91396 1.45205 1.82248 1.94494 1.20089 0.96704 0.92613 0.99141 1.17952 0.89038 0.93586 0.96617 1.21256 1.07969 1.33665 0.93831 0.93253 1.25904 0.96783 0.94660 1.01782 1.70062 1.17811 1.35320 1.33642 0.85493 0.77901 0.78489 0.79149 1.19689 1.20040 1.18942 1.19653 0.88308 0.99315 1.05818 1.18238 0.85252 0.94075 1.05324 1.44038 1.02520 1.07613 1.62933 1.22208 1.02110 0.78785 1.04072 0.88872 0.88139 0.89876 0.81364 0.83148 0.98170 0.96813 0.92427 0.85566 0.90410 0.90386 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.78 71.24 0.70 -0.23 16 2 C 0.09 1.92 6.83 40.87 0.28 2.20 16 3 C -0.22 -5.81 10.95 23.51 0.26 -5.55 16 4 C -0.11 -3.95 6.37 -20.20 -0.13 -4.08 16 5 C -0.11 -4.26 10.07 22.51 0.23 -4.03 16 6 C 0.05 2.30 7.22 22.36 0.16 2.46 16 7 F -0.15 -7.73 16.63 44.97 0.75 -6.98 16 8 C -0.08 -4.08 5.08 -19.80 -0.10 -4.18 16 9 C 0.06 3.74 4.80 29.10 0.14 3.88 16 10 C -0.53 -32.12 9.09 25.60 0.23 -31.89 16 11 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 12 C 0.01 0.42 5.46 84.66 0.46 0.88 16 13 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 14 Si 0.97 46.06 29.54 68.60 2.03 48.09 16 15 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 17 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 18 C -0.11 -4.59 9.55 22.35 0.21 -4.38 16 19 C 0.08 2.75 6.81 38.99 0.27 3.02 16 20 N -0.49 -12.79 3.18 -524.66 -1.67 -14.46 16 21 C 0.07 1.20 10.59 127.77 1.35 2.55 16 22 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 23 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.08 0.67 7.57 -2.39 -0.02 0.65 16 25 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 26 H 0.15 4.78 8.06 -2.91 -0.02 4.75 16 27 H 0.00 0.00 7.93 -2.39 -0.02 -0.01 16 28 H 0.01 0.80 7.98 -2.38 -0.02 0.78 16 29 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.13 4.94 8.02 -2.91 -0.02 4.92 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 33 H 0.11 1.17 7.50 -2.39 -0.02 1.16 16 Total: -1.00 -74.57 290.23 6.55 -68.01 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 1.11 Total: 2.19 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 4.06 Total: -39.35 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -1.38 Total: -71.96 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 0.75 Total: -6.98 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -74.57 6.55 -68.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261098064.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.194 kcal (2) G-P(sol) polarization free energy of solvation -74.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds