Wall clock time and date at job start Mon Mar 30 2020 05:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35974 * 116.99814 * 2 1 4 4 C 1.37855 * 119.31797 * 0.02562 * 3 2 1 5 5 C 1.40790 * 120.07011 * 179.97438 * 4 3 2 6 6 C 1.40482 * 120.61574 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00441 * 155.28217 * 6 5 4 8 8 C 1.39884 * 120.00023 * 335.28771 * 6 5 4 9 9 N 1.30930 * 119.99561 * 342.20461 * 8 6 5 10 10 Si 1.86798 * 120.00132 * 162.20454 * 8 6 5 11 11 H 1.48504 * 109.47257 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47002 * 120.00303 * 10 8 6 13 13 H 1.48503 * 109.46923 * 239.99946 * 10 8 6 14 14 C 1.46555 * 118.77112 * 0.02562 * 5 4 3 15 15 C 1.41138 * 133.84033 * 179.97438 * 14 5 4 16 16 C 1.34881 * 107.79952 * 180.25125 * 15 14 5 17 17 N 1.36547 * 109.48065 * 359.62634 * 16 15 14 18 18 H 0.97001 * 125.57908 * 180.11277 * 17 16 15 19 19 C 1.37942 * 108.82920 * 0.37845 * 17 16 15 20 20 C 1.39527 * 133.34494 * 179.77593 * 19 17 16 21 21 O 1.35768 * 119.56317 * 359.97438 * 20 19 17 22 22 C 1.42894 * 117.00415 * 270.02491 * 21 20 19 23 23 H 1.09005 * 109.47267 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47038 * 299.99488 * 1 2 3 25 25 H 1.08997 * 109.47568 * 59.99617 * 1 2 3 26 26 H 1.07995 * 119.96214 * 359.97413 * 4 3 2 27 27 H 0.97005 * 119.99404 * 180.02562 * 9 8 6 28 28 H 1.07995 * 126.09690 * 359.97438 * 15 14 5 29 29 H 1.07998 * 125.25379 * 179.77541 * 16 15 14 30 30 H 1.09001 * 109.47457 * 180.02562 * 22 21 20 31 31 H 1.09007 * 109.47335 * 300.00144 * 22 21 20 32 32 H 1.08993 * 109.47461 * 59.99910 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2817 2.3587 0.0005 5 6 1.9043 3.6214 0.0011 6 6 1.1364 4.7977 0.0022 7 1 1.5527 5.7141 0.3937 8 6 -0.1677 4.7821 -0.5037 9 7 -0.5563 3.8034 -1.2817 10 14 -1.3546 6.1577 -0.0694 11 1 -0.6758 7.1352 0.8189 12 1 -1.7967 6.8407 -1.3117 13 1 -2.5351 5.5903 0.6304 14 6 3.3684 3.6860 0.0005 15 6 4.3002 4.7461 0.0003 16 6 5.5370 4.2079 -0.0059 17 7 5.4410 2.8458 -0.0014 18 1 6.1882 2.2273 -0.0027 19 6 4.1073 2.4935 -0.0006 20 6 3.4405 1.2679 -0.0006 21 8 4.1577 0.1151 -0.0022 22 6 4.4995 -0.4346 -1.2760 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2040 2.2886 0.0005 27 1 -1.4605 3.7928 -1.6328 28 1 4.0649 5.8001 0.0003 29 1 6.4605 4.7679 -0.0110 30 1 5.0700 -1.3525 -1.1344 31 1 3.5887 -0.6556 -1.8327 32 1 5.1000 0.2845 -1.8329 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261103038.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:55 Heat of formation + Delta-G solvation = -23.240384 kcal Electronic energy + Delta-G solvation = -17998.316394 eV Core-core repulsion = 15118.076990 eV Total energy + Delta-G solvation = -2880.239404 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06836 -38.25754 -36.71946 -35.10577 -32.71670 -30.19071 -28.47122 -27.42101 -26.68914 -26.19852 -23.95110 -21.26061 -20.33716 -19.45983 -17.97848 -16.98361 -16.04385 -15.97082 -15.09548 -14.89354 -14.23020 -14.21315 -13.94163 -13.46583 -12.99883 -12.73692 -12.55840 -11.88748 -11.84826 -11.47928 -11.35742 -11.14795 -10.84578 -10.78770 -10.50877 -10.19630 -9.69139 -9.63602 -8.94668 -8.83327 -8.15117 -7.05861 -6.88351 -6.36850 -4.41717 2.38347 2.92572 2.97219 3.02999 3.20523 3.76397 3.83258 3.98834 4.36310 4.59364 5.06678 5.59976 5.88889 5.89622 5.99010 5.99785 6.11006 6.20311 6.25786 6.40993 6.45263 6.81349 6.83096 6.92135 7.01100 7.13787 7.31642 7.69971 7.84496 8.01664 8.12712 8.32640 8.46410 8.52497 8.69285 8.72706 9.12011 9.90935 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.020694 B = 0.009667 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.716463 B = 2895.892849 C = 4083.274914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.324 6.324 3 C 0.178 3.822 4 C -0.305 4.305 5 C 0.181 3.819 6 C -0.423 4.423 7 H 0.087 0.913 8 C 0.073 3.927 9 N -0.767 5.767 10 Si 0.913 3.087 11 H -0.256 1.256 12 H -0.272 1.272 13 H -0.269 1.269 14 C -0.199 4.199 15 C -0.154 4.154 16 C -0.046 4.046 17 N -0.588 5.588 18 H 0.403 0.597 19 C 0.145 3.855 20 C -0.119 4.119 21 O -0.318 6.318 22 C 0.026 3.974 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.133 0.867 27 H 0.284 0.716 28 H 0.126 0.874 29 H 0.149 0.851 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 -1.257 0.067 2.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.238 6.238 3 C 0.132 3.868 4 C -0.327 4.327 5 C 0.177 3.823 6 C -0.450 4.450 7 H 0.105 0.895 8 C -0.149 4.149 9 N -0.390 5.390 10 Si 0.737 3.263 11 H -0.180 1.180 12 H -0.197 1.197 13 H -0.194 1.194 14 C -0.203 4.203 15 C -0.180 4.180 16 C -0.171 4.171 17 N -0.190 5.190 18 H 0.238 0.762 19 C 0.035 3.965 20 C -0.167 4.167 21 O -0.234 6.234 22 C -0.070 4.070 23 H 0.098 0.902 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.150 0.850 27 H 0.095 0.905 28 H 0.144 0.856 29 H 0.166 0.834 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.154 -1.655 0.072 2.717 hybrid contribution -0.474 0.522 -0.343 0.784 sum 1.680 -1.133 -0.272 2.044 Atomic orbital electron populations 1.22815 0.80067 1.01446 1.01629 1.85948 1.20016 1.28638 1.89194 1.18682 0.89965 0.83758 0.94407 1.20894 0.99370 0.90248 1.22139 1.17864 0.87750 0.92598 0.84111 1.19586 0.96349 0.96918 1.32158 0.89473 1.26098 0.98994 0.97226 0.92541 1.69920 1.19032 1.29942 1.20112 0.86165 0.79745 0.80879 0.79541 1.17955 1.19678 1.19412 1.19138 0.92994 0.91172 1.17020 1.20349 0.91246 0.97879 1.08536 1.21327 0.98456 0.82558 1.14725 1.41464 1.05676 1.06241 1.65600 0.76215 1.17898 0.82699 0.93891 1.01976 1.15908 0.85863 0.82042 1.32909 1.86167 1.72386 1.38770 1.26057 1.22901 0.98675 0.97032 0.88392 0.90197 0.93479 0.92583 0.84976 0.90467 0.85642 0.83359 0.91308 0.94735 0.95828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.79 101.05 0.99 1.67 16 2 O -0.32 -7.53 10.22 -35.36 -0.36 -7.89 16 3 C 0.18 4.54 6.68 -39.24 -0.26 4.27 16 4 C -0.31 -7.97 7.65 -38.76 -0.30 -8.26 16 5 C 0.18 4.81 5.72 -104.74 -0.60 4.21 16 6 C -0.42 -10.72 8.99 -38.12 -0.34 -11.06 16 7 H 0.09 2.11 7.91 -52.49 -0.41 1.70 16 8 C 0.07 1.71 5.14 -17.32 -0.09 1.62 16 9 N -0.77 -18.53 10.98 55.55 0.61 -17.92 16 10 Si 0.91 17.41 29.60 -169.99 -5.03 12.38 16 11 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 12 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 13 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 14 C -0.20 -5.05 6.21 -104.68 -0.65 -5.70 16 15 C -0.15 -3.38 10.74 -39.67 -0.43 -3.81 16 16 C -0.05 -0.88 11.86 -16.64 -0.20 -1.07 16 17 N -0.59 -11.84 6.14 -10.51 -0.06 -11.90 16 18 H 0.40 6.87 8.96 -40.82 -0.37 6.50 16 19 C 0.14 3.53 7.19 -83.87 -0.60 2.93 16 20 C -0.12 -2.99 5.75 -38.62 -0.22 -3.21 16 21 O -0.32 -7.35 10.12 -34.71 -0.35 -7.70 16 22 C 0.03 0.49 11.13 101.05 1.12 1.61 16 23 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.05 0.87 7.62 -51.93 -0.40 0.47 16 25 H 0.06 1.08 7.62 -51.93 -0.40 0.68 16 26 H 0.13 3.39 4.29 -52.49 -0.23 3.16 16 27 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 28 H 0.13 2.51 8.06 -52.49 -0.42 2.09 16 29 H 0.15 2.17 8.06 -52.49 -0.42 1.74 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 278.60 15.07 4.20 4.20 Total: -1.00 -29.57 278.60 -6.04 -35.61 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -3.47 Total: 10.03 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -1.57 Total: -16.80 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: 0.55 Total: -29.83 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.71 Total: -15.59 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.57 -6.04 -35.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103038.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.370 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds