Wall clock time and date at job start Mon Mar 30 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35974 * 116.99814 * 2 1 4 4 C 1.37855 * 119.31797 * 0.02562 * 3 2 1 5 5 C 1.40790 * 120.07011 * 179.97438 * 4 3 2 6 6 C 1.40482 * 120.61574 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00441 * 155.28217 * 6 5 4 8 8 C 1.39884 * 120.00023 * 335.28771 * 6 5 4 9 9 N 1.30930 * 119.99561 * 342.20461 * 8 6 5 10 10 Si 1.86798 * 120.00132 * 162.20454 * 8 6 5 11 11 H 1.48504 * 109.47257 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47002 * 120.00303 * 10 8 6 13 13 H 1.48503 * 109.46923 * 239.99946 * 10 8 6 14 14 C 1.46555 * 118.77112 * 0.02562 * 5 4 3 15 15 C 1.41138 * 133.84033 * 179.97438 * 14 5 4 16 16 C 1.34881 * 107.79952 * 180.25125 * 15 14 5 17 17 N 1.36547 * 109.48065 * 359.62634 * 16 15 14 18 18 H 0.97001 * 125.57908 * 180.11277 * 17 16 15 19 19 C 1.37942 * 108.82920 * 0.37845 * 17 16 15 20 20 C 1.39527 * 133.34494 * 179.77593 * 19 17 16 21 21 O 1.35768 * 119.56317 * 359.97438 * 20 19 17 22 22 C 1.42894 * 117.00415 * 270.02491 * 21 20 19 23 23 H 1.09005 * 109.47267 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47038 * 299.99488 * 1 2 3 25 25 H 1.08997 * 109.47568 * 59.99617 * 1 2 3 26 26 H 1.07995 * 119.96214 * 359.97413 * 4 3 2 27 27 H 0.97005 * 119.99404 * 180.02562 * 9 8 6 28 28 H 1.07995 * 126.09690 * 359.97438 * 15 14 5 29 29 H 1.07998 * 125.25379 * 179.77541 * 16 15 14 30 30 H 1.09001 * 109.47457 * 180.02562 * 22 21 20 31 31 H 1.09007 * 109.47335 * 300.00144 * 22 21 20 32 32 H 1.08993 * 109.47461 * 59.99910 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2817 2.3587 0.0005 5 6 1.9043 3.6214 0.0011 6 6 1.1364 4.7977 0.0022 7 1 1.5527 5.7141 0.3937 8 6 -0.1677 4.7821 -0.5037 9 7 -0.5563 3.8034 -1.2817 10 14 -1.3546 6.1577 -0.0694 11 1 -0.6758 7.1352 0.8189 12 1 -1.7967 6.8407 -1.3117 13 1 -2.5351 5.5903 0.6304 14 6 3.3684 3.6860 0.0005 15 6 4.3002 4.7461 0.0003 16 6 5.5370 4.2079 -0.0059 17 7 5.4410 2.8458 -0.0014 18 1 6.1882 2.2273 -0.0027 19 6 4.1073 2.4935 -0.0006 20 6 3.4405 1.2679 -0.0006 21 8 4.1577 0.1151 -0.0022 22 6 4.4995 -0.4346 -1.2760 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2040 2.2886 0.0005 27 1 -1.4605 3.7928 -1.6328 28 1 4.0649 5.8001 0.0003 29 1 6.4605 4.7679 -0.0110 30 1 5.0700 -1.3525 -1.1344 31 1 3.5887 -0.6556 -1.8327 32 1 5.1000 0.2845 -1.8329 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261103038.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:54 Heat of formation + Delta-G solvation = -41.783377 kcal Electronic energy + Delta-G solvation = -17999.120479 eV Core-core repulsion = 15118.076990 eV Total energy + Delta-G solvation = -2881.043488 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79691 -40.00078 -38.46087 -36.90124 -34.50665 -31.92617 -30.23604 -29.15078 -28.39693 -27.78973 -25.70841 -23.05093 -22.09714 -21.16474 -19.73515 -18.74950 -17.78051 -17.73607 -16.76912 -16.59568 -16.02493 -15.86568 -15.57030 -15.09468 -14.67364 -14.36617 -14.25206 -13.58596 -13.45053 -13.07415 -13.04310 -12.72396 -12.50502 -12.42590 -12.07988 -11.99605 -11.45225 -11.37715 -10.72268 -10.59396 -9.87682 -8.82190 -8.71191 -8.15901 -6.28231 0.60909 1.25333 1.39839 1.50773 1.56205 2.13916 2.17342 2.34081 2.58356 2.97200 3.32791 3.73563 4.44139 4.46788 4.46863 4.48575 4.63351 4.66066 4.71590 4.73930 4.78811 5.01715 5.06193 5.14116 5.20947 5.38763 5.60391 5.86111 6.10144 6.12829 6.33260 6.53422 6.63811 6.75933 6.82969 7.10165 7.31019 8.18596 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.020694 B = 0.009667 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.716463 B = 2895.892849 C = 4083.274914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.336 6.336 3 C 0.157 3.843 4 C -0.324 4.324 5 C 0.146 3.854 6 C -0.452 4.452 7 H 0.087 0.913 8 C 0.035 3.965 9 N -0.797 5.797 10 Si 0.988 3.012 11 H -0.254 1.254 12 H -0.262 1.262 13 H -0.262 1.262 14 C -0.226 4.226 15 C -0.194 4.194 16 C -0.003 4.003 17 N -0.576 5.576 18 H 0.420 0.580 19 C 0.118 3.882 20 C -0.127 4.127 21 O -0.331 6.331 22 C 0.026 3.974 23 H 0.123 0.877 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.127 0.873 27 H 0.294 0.706 28 H 0.136 0.864 29 H 0.205 0.795 30 H 0.107 0.893 31 H 0.022 0.978 32 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 -0.795 0.074 3.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.250 6.250 3 C 0.110 3.890 4 C -0.345 4.345 5 C 0.142 3.858 6 C -0.479 4.479 7 H 0.105 0.895 8 C -0.184 4.184 9 N -0.420 5.420 10 Si 0.808 3.192 11 H -0.178 1.178 12 H -0.187 1.187 13 H -0.186 1.186 14 C -0.231 4.231 15 C -0.219 4.219 16 C -0.129 4.129 17 N -0.178 5.178 18 H 0.258 0.742 19 C 0.008 3.992 20 C -0.175 4.175 21 O -0.248 6.248 22 C -0.069 4.069 23 H 0.141 0.859 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.145 0.855 27 H 0.105 0.895 28 H 0.154 0.846 29 H 0.222 0.778 30 H 0.125 0.875 31 H 0.041 0.959 32 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.228 -1.228 0.071 3.454 hybrid contribution -0.657 0.291 -0.381 0.813 sum 2.571 -0.938 -0.310 2.754 Atomic orbital electron populations 1.23026 0.78035 1.03970 1.00936 1.85909 1.22110 1.27797 1.89156 1.18885 0.90649 0.84242 0.95188 1.20909 0.99247 0.90759 1.23575 1.18296 0.89086 0.93258 0.85130 1.19800 0.97822 0.96711 1.33549 0.89494 1.26961 0.99941 0.99750 0.91709 1.69951 1.19968 1.31586 1.20503 0.85060 0.77185 0.77539 0.79440 1.17770 1.18692 1.18613 1.19586 0.93174 0.93049 1.17290 1.20611 0.91860 0.98085 1.11359 1.22111 0.99463 0.81897 1.09413 1.41534 1.04751 1.07209 1.64352 0.74232 1.17994 0.84490 0.93451 1.03311 1.16126 0.86100 0.82974 1.32328 1.86066 1.72083 1.38253 1.28375 1.23052 0.98681 0.98500 0.86673 0.85938 0.93738 0.93721 0.85547 0.89467 0.84584 0.77811 0.87483 0.95895 0.95178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 9.79 113.37 1.11 2.44 16 2 O -0.34 -15.91 10.22 -78.25 -0.80 -16.71 16 3 C 0.16 8.26 6.68 22.49 0.15 8.41 16 4 C -0.32 -17.69 7.65 22.80 0.17 -17.51 16 5 C 0.15 8.11 5.72 -19.94 -0.11 8.00 16 6 C -0.45 -23.72 8.99 23.22 0.21 -23.51 16 7 H 0.09 4.37 7.91 -2.91 -0.02 4.34 16 8 C 0.04 1.68 5.14 85.23 0.44 2.11 16 9 N -0.80 -39.55 10.98 21.82 0.24 -39.31 16 10 Si 0.99 35.80 29.60 68.60 2.03 37.83 16 11 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 12 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 13 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 14 C -0.23 -11.70 6.21 -19.90 -0.12 -11.82 16 15 C -0.19 -8.34 10.74 22.21 0.24 -8.10 16 16 C 0.00 -0.12 11.86 83.19 0.99 0.87 16 17 N -0.58 -21.91 6.14 -187.18 -1.15 -23.06 16 18 H 0.42 13.05 8.96 -92.71 -0.83 12.22 16 19 C 0.12 5.75 7.19 38.99 0.28 6.03 16 20 C -0.13 -6.48 5.75 22.89 0.13 -6.35 16 21 O -0.33 -15.18 10.12 -75.95 -0.77 -15.94 16 22 C 0.03 0.95 11.13 113.37 1.26 2.22 16 23 H 0.12 3.50 8.14 -2.38 -0.02 3.49 16 24 H 0.04 1.68 7.62 -2.38 -0.02 1.66 16 25 H 0.04 1.77 7.62 -2.39 -0.02 1.76 16 26 H 0.13 6.84 4.29 -2.91 -0.01 6.82 16 27 H 0.29 12.91 8.30 -92.70 -0.77 12.15 16 28 H 0.14 5.38 8.06 -2.91 -0.02 5.36 16 29 H 0.21 4.76 8.06 -2.91 -0.02 4.74 16 30 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -66.64 278.60 4.62 -62.03 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.32 Total: 32.39 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 4.74 Total: -37.22 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -0.91 Total: -62.37 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.57 Total: -32.66 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Total: -66.64 4.62 -62.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103038.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.243 kcal (2) G-P(sol) polarization free energy of solvation -66.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds