Wall clock time and date at job start Mon Mar 30 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35716 * 116.99974 * 2 1 4 4 C 1.38707 * 119.49102 * 359.72712 * 3 2 1 5 5 C 1.38135 * 121.41521 * 179.79775 * 4 3 2 6 6 O 1.35721 * 120.02073 * 180.24182 * 5 4 3 7 7 C 1.42901 * 117.00224 * 0.20982 * 6 5 4 8 8 C 1.41433 * 119.95201 * 0.45001 * 5 4 3 9 9 C 1.40365 * 120.67610 * 179.80557 * 8 5 4 10 10 H 1.08006 * 119.99655 * 35.83845 * 9 8 5 11 11 C 1.39893 * 120.00259 * 215.83398 * 9 8 5 12 12 N 1.30966 * 119.99712 * 20.37597 * 11 9 8 13 13 Si 1.86797 * 120.00176 * 200.36643 * 11 9 8 14 14 H 1.48501 * 109.47104 * 90.00392 * 13 11 9 15 15 H 1.48494 * 109.47335 * 210.00456 * 13 11 9 16 16 H 1.48507 * 109.47195 * 330.00591 * 13 11 9 17 17 C 1.46504 * 118.64698 * 359.79053 * 8 5 4 18 18 C 1.41214 * 133.83340 * 179.97438 * 17 8 5 19 19 C 1.34798 * 107.78614 * 179.97438 * 18 17 8 20 20 N 1.36500 * 109.46931 * 0.02562 * 19 18 17 21 21 H 0.97001 * 125.57539 * 180.02562 * 20 19 18 22 22 C 1.37979 * 108.84781 * 359.97438 * 20 19 18 23 23 H 1.08996 * 109.47054 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47018 * 60.00255 * 1 2 3 25 25 H 1.08999 * 109.47129 * 299.99846 * 1 2 3 26 26 H 1.07992 * 119.29543 * 359.97438 * 4 3 2 27 27 H 1.09008 * 109.46827 * 60.00408 * 7 6 5 28 28 H 1.09006 * 109.46948 * 179.97438 * 7 6 5 29 29 H 1.08994 * 109.47106 * 299.99858 * 7 6 5 30 30 H 0.97004 * 119.99777 * 180.02562 * 12 11 9 31 31 H 1.07999 * 126.10477 * 359.97438 * 18 17 8 32 32 H 1.08001 * 125.26688 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2794 2.3658 -0.0058 5 6 1.8648 3.6169 -0.0018 6 8 1.0882 4.7300 -0.0027 7 6 -0.3272 4.5335 -0.0031 8 6 3.2740 3.7372 -0.0013 9 6 3.8849 5.0009 -0.0014 10 1 3.4370 5.8173 0.5458 11 6 5.0739 5.2031 -0.7103 12 7 5.4098 4.3816 -1.6734 13 14 6.1822 6.6449 -0.2835 14 1 7.1617 6.2269 0.7515 15 1 6.9076 7.0890 -1.5007 16 1 5.3585 7.7650 0.2383 17 6 4.0832 2.5159 -0.0004 18 6 5.4725 2.2631 -0.0002 19 6 5.6479 0.9266 0.0014 20 7 4.4311 0.3081 0.0017 21 1 4.2856 -0.6510 0.0031 22 6 3.4421 1.2701 0.0008 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2024 2.2864 -0.0106 27 1 -0.6167 3.9751 0.8872 28 1 -0.8284 5.5016 -0.0033 29 1 -0.6161 3.9742 -0.8928 30 1 6.2344 4.5215 -2.1647 31 1 6.2548 3.0077 -0.0011 32 1 6.6034 0.4231 0.0016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261103825.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:39 Heat of formation + Delta-G solvation = -10.197090 kcal Electronic energy + Delta-G solvation = -18055.558047 eV Core-core repulsion = 15175.884243 eV Total energy + Delta-G solvation = -2879.673804 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.02640 -38.10224 -37.47801 -34.40421 -32.78042 -29.92826 -28.61386 -27.87801 -26.64061 -26.08908 -24.02505 -21.13882 -20.17887 -19.41657 -17.91103 -17.11616 -15.95925 -15.66653 -15.15692 -14.93982 -14.60031 -14.41313 -13.69455 -13.57273 -12.99848 -12.54472 -12.34724 -12.10336 -11.57493 -11.44686 -11.12666 -11.03506 -10.74384 -10.69532 -10.60515 -10.46660 -10.20219 -9.61441 -9.01839 -8.66538 -7.99146 -6.76902 -6.72549 -6.08816 -3.99106 2.43086 3.02590 3.15746 3.20180 3.29471 4.03352 4.07396 4.26900 4.33373 4.64172 4.72396 5.55786 5.62328 5.68745 5.82284 5.82982 5.89576 5.98406 6.02046 6.11463 6.56942 6.64357 6.70629 6.88980 7.21117 7.27665 7.46276 7.61708 7.89214 7.96718 8.25932 8.44749 8.53776 8.68767 8.80139 8.90495 9.20211 10.29432 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.010164 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.622945 B = 2754.112158 C = 3936.628050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.337 6.337 3 C -0.007 4.007 4 C -0.201 4.201 5 C -0.022 4.022 6 O -0.308 6.308 7 C 0.037 3.963 8 C 0.137 3.863 9 C -0.439 4.439 10 H 0.084 0.916 11 C 0.078 3.922 12 N -0.773 5.773 13 Si 0.900 3.100 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.262 1.262 17 C -0.096 4.096 18 C -0.125 4.125 19 C -0.031 4.031 20 N -0.592 5.592 21 H 0.402 0.598 22 C 0.088 3.912 23 H 0.080 0.920 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.106 0.894 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.280 0.720 31 H 0.127 0.873 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 -4.174 1.964 5.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.252 6.252 3 C -0.053 4.053 4 C -0.222 4.222 5 C -0.067 4.067 6 O -0.223 6.223 7 C -0.059 4.059 8 C 0.133 3.867 9 C -0.468 4.468 10 H 0.102 0.898 11 C -0.141 4.141 12 N -0.398 5.398 13 Si 0.725 3.275 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.186 1.186 17 C -0.101 4.101 18 C -0.151 4.151 19 C -0.157 4.157 20 N -0.196 5.196 21 H 0.237 0.763 22 C -0.019 4.019 23 H 0.099 0.901 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.124 0.876 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.153 -4.312 1.766 5.626 hybrid contribution -0.053 0.065 -0.041 0.093 sum -3.206 -4.247 1.725 5.594 Atomic orbital electron populations 1.22654 0.81044 1.01559 1.00224 1.85780 1.19160 1.28569 1.91737 1.16942 0.87574 0.83110 1.17674 1.20297 0.97410 0.91787 1.12698 1.18339 0.90278 0.83419 1.14665 1.85963 1.15058 1.30245 1.91046 1.22668 0.82525 1.01288 0.99443 1.17248 0.86434 0.91926 0.91078 1.19128 1.05103 0.96286 1.26242 0.89754 1.25841 0.97470 0.97313 0.93526 1.69972 1.21629 1.34636 1.13513 0.86435 0.80315 0.81906 0.78858 1.19241 1.20492 1.18607 1.18560 0.92358 0.89617 1.09611 1.20334 0.95325 0.93076 1.06388 1.21467 0.87879 0.93447 1.12873 1.41389 1.04676 1.06951 1.66551 0.76331 1.17366 0.86544 0.89023 1.08944 0.90136 0.94034 0.94072 0.87614 0.94678 0.90181 0.94565 0.90942 0.85479 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.79 101.05 0.99 1.64 16 2 O -0.34 -6.97 10.48 -18.85 -0.20 -7.17 16 3 C -0.01 -0.17 6.71 -38.82 -0.26 -0.43 16 4 C -0.20 -4.70 7.98 -39.45 -0.31 -5.02 16 5 C -0.02 -0.56 6.72 -38.40 -0.26 -0.82 16 6 O -0.31 -7.38 9.93 -18.87 -0.19 -7.57 16 7 C 0.04 0.66 9.80 101.05 0.99 1.65 16 8 C 0.14 3.78 5.54 -104.55 -0.58 3.20 16 9 C -0.44 -11.95 8.54 -38.16 -0.33 -12.28 16 10 H 0.08 2.28 7.88 -52.48 -0.41 1.87 16 11 C 0.08 1.97 4.34 -17.30 -0.08 1.90 16 12 N -0.77 -20.03 10.51 55.55 0.58 -19.45 16 13 Si 0.90 18.87 29.61 -169.99 -5.03 13.84 16 14 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 15 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 17 C -0.10 -2.54 5.58 -104.74 -0.58 -3.12 16 18 C -0.13 -3.00 8.90 -39.67 -0.35 -3.36 16 19 C -0.03 -0.64 11.85 -16.69 -0.20 -0.84 16 20 N -0.59 -12.32 6.14 -10.51 -0.06 -12.39 16 21 H 0.40 7.02 8.96 -40.82 -0.37 6.66 16 22 C 0.09 2.17 7.19 -83.81 -0.60 1.56 16 23 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.04 0.63 7.61 -51.93 -0.40 0.24 16 25 H 0.04 0.61 7.63 -51.93 -0.40 0.22 16 26 H 0.11 2.13 4.28 -52.49 -0.22 1.91 16 27 H 0.03 0.57 7.66 -51.92 -0.40 0.17 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.04 0.61 7.63 -51.93 -0.40 0.21 16 30 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 31 H 0.13 3.04 6.66 -52.49 -0.35 2.69 16 32 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 271.88 15.07 4.10 4.10 Total: -1.00 -30.88 271.88 -5.71 -36.59 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -3.34 Total: 7.97 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -1.57 Total: -15.92 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.52 Total: -31.83 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.38 Total: -14.74 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.88 -5.71 -36.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103825.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.394 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds