Wall clock time and date at job start Mon Mar 30 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35716 * 116.99974 * 2 1 4 4 C 1.38707 * 119.49102 * 359.72712 * 3 2 1 5 5 C 1.38135 * 121.41521 * 179.79775 * 4 3 2 6 6 O 1.35721 * 120.02073 * 180.24182 * 5 4 3 7 7 C 1.42901 * 117.00224 * 0.20982 * 6 5 4 8 8 C 1.41433 * 119.95201 * 0.45001 * 5 4 3 9 9 C 1.40365 * 120.67610 * 179.80557 * 8 5 4 10 10 H 1.08006 * 119.99655 * 35.83845 * 9 8 5 11 11 C 1.39893 * 120.00259 * 215.83398 * 9 8 5 12 12 N 1.30966 * 119.99712 * 20.37597 * 11 9 8 13 13 Si 1.86797 * 120.00176 * 200.36643 * 11 9 8 14 14 H 1.48501 * 109.47104 * 90.00392 * 13 11 9 15 15 H 1.48494 * 109.47335 * 210.00456 * 13 11 9 16 16 H 1.48507 * 109.47195 * 330.00591 * 13 11 9 17 17 C 1.46504 * 118.64698 * 359.79053 * 8 5 4 18 18 C 1.41214 * 133.83340 * 179.97438 * 17 8 5 19 19 C 1.34798 * 107.78614 * 179.97438 * 18 17 8 20 20 N 1.36500 * 109.46931 * 0.02562 * 19 18 17 21 21 H 0.97001 * 125.57539 * 180.02562 * 20 19 18 22 22 C 1.37979 * 108.84781 * 359.97438 * 20 19 18 23 23 H 1.08996 * 109.47054 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47018 * 60.00255 * 1 2 3 25 25 H 1.08999 * 109.47129 * 299.99846 * 1 2 3 26 26 H 1.07992 * 119.29543 * 359.97438 * 4 3 2 27 27 H 1.09008 * 109.46827 * 60.00408 * 7 6 5 28 28 H 1.09006 * 109.46948 * 179.97438 * 7 6 5 29 29 H 1.08994 * 109.47106 * 299.99858 * 7 6 5 30 30 H 0.97004 * 119.99777 * 180.02562 * 12 11 9 31 31 H 1.07999 * 126.10477 * 359.97438 * 18 17 8 32 32 H 1.08001 * 125.26688 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2794 2.3658 -0.0058 5 6 1.8648 3.6169 -0.0018 6 8 1.0882 4.7300 -0.0027 7 6 -0.3272 4.5335 -0.0031 8 6 3.2740 3.7372 -0.0013 9 6 3.8849 5.0009 -0.0014 10 1 3.4370 5.8173 0.5458 11 6 5.0739 5.2031 -0.7103 12 7 5.4098 4.3816 -1.6734 13 14 6.1822 6.6449 -0.2835 14 1 7.1617 6.2269 0.7515 15 1 6.9076 7.0890 -1.5007 16 1 5.3585 7.7650 0.2383 17 6 4.0832 2.5159 -0.0004 18 6 5.4725 2.2631 -0.0002 19 6 5.6479 0.9266 0.0014 20 7 4.4311 0.3081 0.0017 21 1 4.2856 -0.6510 0.0031 22 6 3.4421 1.2701 0.0008 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2024 2.2864 -0.0106 27 1 -0.6167 3.9751 0.8872 28 1 -0.8284 5.5016 -0.0033 29 1 -0.6161 3.9742 -0.8928 30 1 6.2344 4.5215 -2.1647 31 1 6.2548 3.0077 -0.0011 32 1 6.6034 0.4231 0.0016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261103825.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:38 Heat of formation + Delta-G solvation = -31.066355 kcal Electronic energy + Delta-G solvation = -18056.463006 eV Core-core repulsion = 15175.884243 eV Total energy + Delta-G solvation = -2880.578763 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.79200 -39.80851 -39.14753 -36.21434 -34.57385 -31.70509 -30.39318 -29.55737 -28.13167 -27.67759 -25.79592 -22.91093 -21.95141 -21.16540 -19.70190 -18.83587 -17.72900 -17.35743 -16.92752 -16.50524 -16.23754 -15.97869 -15.34904 -15.19703 -14.69477 -14.33809 -13.96580 -13.66437 -13.31290 -13.15699 -12.78557 -12.65338 -12.39642 -12.29399 -12.14727 -12.07441 -11.93067 -11.40692 -10.82856 -10.43406 -9.77269 -8.61307 -8.51881 -7.91930 -5.91785 0.62922 1.21993 1.43673 1.55137 1.55507 2.29185 2.32279 2.62052 2.77111 2.85351 3.04145 3.68173 4.21205 4.43736 4.45440 4.48059 4.51152 4.53039 4.71646 4.75119 4.81439 4.87391 4.93396 5.10396 5.33132 5.52358 5.64630 5.80112 6.06497 6.17322 6.37694 6.60137 6.80809 6.85183 7.02408 7.16504 7.39496 8.49073 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.010164 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.622945 B = 2754.112158 C = 3936.628050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.344 6.344 3 C 0.010 3.990 4 C -0.215 4.215 5 C -0.036 4.036 6 O -0.338 6.338 7 C 0.029 3.971 8 C 0.086 3.914 9 C -0.480 4.480 10 H 0.065 0.935 11 C 0.044 3.956 12 N -0.805 5.805 13 Si 0.968 3.032 14 H -0.259 1.259 15 H -0.268 1.268 16 H -0.267 1.267 17 C -0.114 4.114 18 C -0.172 4.172 19 C 0.011 3.989 20 N -0.577 5.577 21 H 0.421 0.579 22 C 0.052 3.948 23 H 0.120 0.880 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.136 0.864 27 H 0.049 0.951 28 H 0.110 0.890 29 H 0.045 0.955 30 H 0.285 0.715 31 H 0.118 0.882 32 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.695 -5.936 2.113 7.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.260 6.260 3 C -0.036 4.036 4 C -0.235 4.235 5 C -0.081 4.081 6 O -0.254 6.254 7 C -0.067 4.067 8 C 0.083 3.917 9 C -0.509 4.509 10 H 0.083 0.917 11 C -0.172 4.172 12 N -0.431 5.431 13 Si 0.790 3.210 14 H -0.184 1.184 15 H -0.193 1.193 16 H -0.191 1.191 17 C -0.119 4.119 18 C -0.198 4.198 19 C -0.116 4.116 20 N -0.181 5.181 21 H 0.259 0.741 22 C -0.056 4.056 23 H 0.138 0.862 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.153 0.847 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.136 0.864 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.386 -6.117 1.917 7.250 hybrid contribution -0.181 0.374 -0.067 0.421 sum -3.567 -5.743 1.850 7.009 Atomic orbital electron populations 1.23052 0.78167 1.04457 1.00852 1.85771 1.22071 1.26885 1.91241 1.17174 0.87774 0.84227 1.14428 1.20535 0.98987 0.90923 1.13102 1.18622 0.90408 0.84717 1.14402 1.85906 1.17941 1.30440 1.91072 1.23010 0.79566 1.03646 1.00439 1.17717 0.87881 0.92802 0.93289 1.19131 1.07236 0.96168 1.28348 0.91657 1.26477 0.98048 0.99868 0.92800 1.70011 1.22315 1.36440 1.14303 0.85424 0.78288 0.78378 0.78937 1.18400 1.19256 1.19096 1.18954 0.93770 0.90120 1.09080 1.20414 0.94434 0.94789 1.10113 1.22143 0.89357 0.92400 1.07698 1.41404 1.04025 1.07558 1.65153 0.74112 1.17587 0.87702 0.89506 1.10782 0.86231 0.93524 0.93201 0.84685 0.93262 0.87194 0.93681 0.90406 0.86379 0.78252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.79 113.37 1.11 1.94 16 2 O -0.34 -13.37 10.48 -90.37 -0.95 -14.32 16 3 C 0.01 0.48 6.71 22.77 0.15 0.63 16 4 C -0.22 -9.99 7.98 22.36 0.18 -9.81 16 5 C -0.04 -1.91 6.72 23.03 0.15 -1.76 16 6 O -0.34 -16.65 9.93 -90.43 -0.90 -17.55 16 7 C 0.03 0.98 9.80 113.37 1.11 2.10 16 8 C 0.09 5.00 5.54 -19.82 -0.11 4.89 16 9 C -0.48 -27.69 8.54 23.19 0.20 -27.49 16 10 H 0.07 3.82 7.88 -2.91 -0.02 3.79 16 11 C 0.04 2.33 4.34 85.22 0.37 2.70 16 12 N -0.81 -43.15 10.51 21.83 0.23 -42.92 16 13 Si 0.97 40.09 29.61 68.60 2.03 42.13 16 14 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 15 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 C -0.11 -6.14 5.58 -19.94 -0.11 -6.25 16 18 C -0.17 -8.28 8.90 22.21 0.20 -8.08 16 19 C 0.01 0.41 11.85 83.18 0.99 1.40 16 20 N -0.58 -22.69 6.14 -187.15 -1.15 -23.84 16 21 H 0.42 13.32 8.96 -92.71 -0.83 12.49 16 22 C 0.05 2.51 7.19 39.01 0.28 2.79 16 23 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.05 1.27 7.61 -2.39 -0.02 1.25 16 25 H 0.05 1.32 7.63 -2.39 -0.02 1.31 16 26 H 0.14 5.23 4.28 -2.91 -0.01 5.22 16 27 H 0.05 1.53 7.66 -2.38 -0.02 1.51 16 28 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 29 H 0.04 1.45 7.63 -2.39 -0.02 1.43 16 30 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 31 H 0.12 5.79 6.66 -2.91 -0.02 5.77 16 32 H 0.20 5.44 8.06 -2.91 -0.02 5.42 16 Total: -1.00 -70.55 271.88 4.11 -66.43 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.33 Total: 27.02 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 4.52 Total: -36.95 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -0.92 Total: -66.77 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -1.84 Total: -31.86 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.13 kcal Total: -70.55 4.11 -66.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103825.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.368 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds