Wall clock time and date at job start Mon Mar 30 2020 06:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99862 * 2 1 4 4 H 1.48501 * 109.47043 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47149 * 29.99724 * 3 2 1 6 6 H 1.48504 * 109.47531 * 149.99685 * 3 2 1 7 7 C 1.37880 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99568 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99905 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47007 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.47123 * 305.00044 * 10 9 7 12 12 N 1.46901 * 109.47164 * 64.99595 * 10 9 7 13 13 C 1.50693 * 109.47536 * 184.99874 * 10 9 7 14 14 C 1.38292 * 120.02403 * 280.00269 * 13 10 9 15 15 C 1.38097 * 119.99007 * 180.02562 * 14 13 10 16 16 C 1.38505 * 120.31448 * 0.02562 * 15 14 13 17 17 C 1.38375 * 119.83010 * 359.80887 * 16 15 14 18 18 C 1.37969 * 120.02302 * 99.97710 * 13 10 9 19 19 O 1.35842 * 121.80026 * 180.55060 * 17 16 15 20 20 C 1.42827 * 117.86244 * 342.58047 * 19 17 16 21 21 C 1.53404 * 108.38650 * 49.21820 * 20 19 17 22 22 C 1.50770 * 118.77010 * 179.53975 * 16 15 14 23 23 H 0.96994 * 120.00281 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47484 * 60.00221 * 9 7 2 25 25 H 1.09000 * 109.47504 * 299.99935 * 9 7 2 26 26 H 1.00896 * 111.00314 * 296.05220 * 12 10 9 27 27 H 1.00907 * 110.99919 * 60.00387 * 12 10 9 28 28 H 1.08006 * 120.00062 * 0.03587 * 14 13 10 29 29 H 1.08003 * 119.84699 * 179.97438 * 15 14 13 30 30 H 1.07999 * 119.89418 * 0.02562 * 18 13 10 31 31 H 1.09001 * 109.67925 * 168.93755 * 20 19 17 32 32 H 1.08999 * 109.68102 * 289.45673 * 20 19 17 33 33 H 1.09001 * 109.69909 * 55.03307 * 21 20 19 34 34 H 1.08997 * 109.69595 * 175.58795 * 21 20 19 35 35 H 1.09002 * 109.43273 * 282.26674 * 22 16 15 36 36 H 1.08991 * 109.43878 * 42.14509 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 1 3.5867 -3.1749 0.8443 12 7 3.6335 -3.2941 -1.2526 13 6 5.5235 -2.6381 0.1267 14 6 6.3101 -2.3976 -0.9850 15 6 7.6863 -2.3998 -0.8703 16 6 8.2854 -2.6428 0.3546 17 6 7.5009 -2.8804 1.4694 18 6 6.1146 -2.8792 1.3498 19 8 8.0458 -3.1122 2.6920 20 6 9.4245 -3.4809 2.7493 21 6 10.2264 -2.4888 1.8972 22 6 9.7908 -2.6475 0.4380 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6799 0.8911 25 1 3.8753 -0.6803 -0.8888 26 1 2.6298 -3.3632 -1.3292 27 1 4.0247 -2.8133 -2.0489 28 1 5.8482 -2.2078 -1.9426 29 1 8.2985 -2.2121 -1.7401 30 1 5.4993 -3.0669 2.2173 31 1 9.7721 -3.4427 3.7817 32 1 9.5514 -4.4896 2.3563 33 1 10.0265 -1.4711 2.2324 34 1 11.2912 -2.7031 1.9885 35 1 10.1728 -3.5897 0.0452 36 1 10.1892 -1.8215 -0.1509 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261104444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:37 Heat of formation + Delta-G solvation = -31.827231 kcal Electronic energy + Delta-G solvation = -17636.090288 eV Core-core repulsion = 14891.311625 eV Total energy + Delta-G solvation = -2744.778663 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52718 -37.96439 -35.34099 -34.02286 -32.38212 -30.08543 -29.98588 -28.54389 -25.90117 -24.44030 -22.89463 -22.15778 -20.56289 -19.34886 -17.37368 -16.59005 -16.53272 -16.01304 -15.20564 -14.56888 -14.35927 -14.26550 -14.00800 -13.43632 -13.26389 -13.09900 -12.84507 -12.75196 -12.20216 -11.97161 -11.56989 -11.40446 -11.07633 -10.95537 -10.68430 -10.46563 -10.35725 -10.21681 -9.79731 -9.26277 -8.62132 -8.42645 -7.95155 -7.71467 -6.11910 -4.11468 1.60732 1.72926 3.26128 3.34644 3.36956 3.40081 4.01381 4.39563 4.54840 4.61939 4.71255 4.95459 5.12012 5.19367 5.26452 5.34532 5.36163 5.48980 5.59022 5.69154 5.72190 5.80200 5.89540 5.96497 6.23943 6.35149 6.46673 6.57761 6.70764 6.94695 7.02592 7.09484 7.28750 7.63624 7.68252 7.94517 8.21994 8.42946 8.90752 9.50434 11.00725 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.031644 B = 0.005403 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.641455 B = 5180.873436 C = 5356.294175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.075 0.925 9 C -0.037 4.037 10 C 0.135 3.865 11 H 0.083 0.917 12 N -0.838 5.838 13 C -0.019 4.019 14 C -0.138 4.138 15 C -0.087 4.087 16 C -0.179 4.179 17 C 0.128 3.872 18 C -0.146 4.146 19 O -0.318 6.318 20 C 0.062 3.938 21 C -0.160 4.160 22 C -0.073 4.073 23 H 0.264 0.736 24 H 0.021 0.979 25 H 0.013 0.987 26 H 0.352 0.648 27 H 0.328 0.672 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.058 -5.355 1.198 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.093 0.907 9 C -0.076 4.076 10 C 0.024 3.976 11 H 0.101 0.899 12 N -0.367 5.367 13 C -0.020 4.020 14 C -0.156 4.156 15 C -0.105 4.105 16 C -0.179 4.179 17 C 0.084 3.916 18 C -0.165 4.165 19 O -0.232 6.232 20 C -0.014 4.014 21 C -0.197 4.197 22 C -0.110 4.110 23 H 0.074 0.926 24 H 0.039 0.961 25 H 0.031 0.969 26 H 0.166 0.834 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.147 0.853 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.187 -5.873 1.675 21.091 hybrid contribution 0.075 1.960 -0.368 1.996 sum 20.262 -3.913 1.306 20.678 Atomic orbital electron populations 1.69905 1.06256 1.27015 1.50541 1.24987 0.94677 0.99129 0.94297 0.86813 0.80499 0.83703 0.78525 1.20331 1.21294 1.18968 1.21043 0.89001 0.94569 1.51649 0.90710 1.20300 0.97562 0.92729 0.96994 1.20333 0.87871 0.95775 0.93669 0.89858 1.59229 1.17548 1.56517 1.03426 1.19933 0.96517 0.93562 0.91958 1.20817 0.92987 1.02997 0.98839 1.20784 0.94734 0.99095 0.95931 1.19632 0.95217 1.09219 0.93879 1.18585 0.92014 0.97251 0.83757 1.20455 0.91434 1.06106 0.98482 1.85996 1.26336 1.84209 1.26701 1.22894 0.79617 0.97471 1.01375 1.22233 1.00529 1.00941 0.96031 1.20397 0.91642 1.02442 0.96487 0.92633 0.96092 0.96900 0.83383 0.86021 0.86050 0.86360 0.85317 0.87903 0.92072 0.90515 0.90127 0.90949 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -14.43 9.10 -34.44 -0.31 -14.74 16 8 H 0.07 2.18 7.39 -52.49 -0.39 1.79 16 9 C -0.04 -0.87 3.67 -27.88 -0.10 -0.98 16 10 C 0.13 2.72 2.99 -68.87 -0.21 2.52 16 11 H 0.08 1.74 8.00 -51.93 -0.42 1.33 16 12 N -0.84 -15.62 9.02 -5.65 -0.05 -15.67 16 13 C -0.02 -0.35 4.95 -104.70 -0.52 -0.87 16 14 C -0.14 -2.26 9.29 -39.61 -0.37 -2.63 16 15 C -0.09 -1.26 9.67 -39.53 -0.38 -1.64 16 16 C -0.18 -2.54 5.75 -104.44 -0.60 -3.14 16 17 C 0.13 2.06 6.47 -39.19 -0.25 1.81 16 18 C -0.15 -2.58 9.56 -39.34 -0.38 -2.95 16 19 O -0.32 -4.68 10.27 -19.24 -0.20 -4.88 16 20 C 0.06 0.62 7.03 37.37 0.26 0.89 16 21 C -0.16 -1.46 6.20 -26.47 -0.16 -1.62 16 22 C -0.07 -0.76 5.86 -27.79 -0.16 -0.92 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 25 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 26 H 0.35 6.89 7.90 -39.29 -0.31 6.58 16 27 H 0.33 5.68 7.35 -39.29 -0.29 5.40 16 28 H 0.12 1.86 6.67 -52.48 -0.35 1.51 16 29 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 30 H 0.13 2.21 8.03 -52.49 -0.42 1.79 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 292.80 15.07 4.41 4.41 Total: -1.00 -30.82 292.80 -8.08 -38.90 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.07 Total: 8.95 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -3.28 Total: -22.33 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.72 Total: -42.15 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.20 Total: -4.88 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.82 -8.08 -38.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.072 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds