Wall clock time and date at job start Mon Mar 30 2020 06:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99862 * 2 1 4 4 H 1.48501 * 109.47043 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47149 * 29.99724 * 3 2 1 6 6 H 1.48504 * 109.47531 * 149.99685 * 3 2 1 7 7 C 1.37880 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99568 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99905 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47007 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.47123 * 305.00044 * 10 9 7 12 12 N 1.46901 * 109.47164 * 64.99595 * 10 9 7 13 13 C 1.50693 * 109.47536 * 184.99874 * 10 9 7 14 14 C 1.38292 * 120.02403 * 280.00269 * 13 10 9 15 15 C 1.38097 * 119.99007 * 180.02562 * 14 13 10 16 16 C 1.38505 * 120.31448 * 0.02562 * 15 14 13 17 17 C 1.38375 * 119.83010 * 359.80887 * 16 15 14 18 18 C 1.37969 * 120.02302 * 99.97710 * 13 10 9 19 19 O 1.35842 * 121.80026 * 180.55060 * 17 16 15 20 20 C 1.42827 * 117.86244 * 342.58047 * 19 17 16 21 21 C 1.53404 * 108.38650 * 49.21820 * 20 19 17 22 22 C 1.50770 * 118.77010 * 179.53975 * 16 15 14 23 23 H 0.96994 * 120.00281 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47484 * 60.00221 * 9 7 2 25 25 H 1.09000 * 109.47504 * 299.99935 * 9 7 2 26 26 H 1.00896 * 111.00314 * 296.05220 * 12 10 9 27 27 H 1.00907 * 110.99919 * 60.00387 * 12 10 9 28 28 H 1.08006 * 120.00062 * 0.03587 * 14 13 10 29 29 H 1.08003 * 119.84699 * 179.97438 * 15 14 13 30 30 H 1.07999 * 119.89418 * 0.02562 * 18 13 10 31 31 H 1.09001 * 109.67925 * 168.93755 * 20 19 17 32 32 H 1.08999 * 109.68102 * 289.45673 * 20 19 17 33 33 H 1.09001 * 109.69909 * 55.03307 * 21 20 19 34 34 H 1.08997 * 109.69595 * 175.58795 * 21 20 19 35 35 H 1.09002 * 109.43273 * 282.26674 * 22 16 15 36 36 H 1.08991 * 109.43878 * 42.14509 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 1 3.5867 -3.1749 0.8443 12 7 3.6335 -3.2941 -1.2526 13 6 5.5235 -2.6381 0.1267 14 6 6.3101 -2.3976 -0.9850 15 6 7.6863 -2.3998 -0.8703 16 6 8.2854 -2.6428 0.3546 17 6 7.5009 -2.8804 1.4694 18 6 6.1146 -2.8792 1.3498 19 8 8.0458 -3.1122 2.6920 20 6 9.4245 -3.4809 2.7493 21 6 10.2264 -2.4888 1.8972 22 6 9.7908 -2.6475 0.4380 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6799 0.8911 25 1 3.8753 -0.6803 -0.8888 26 1 2.6298 -3.3632 -1.3292 27 1 4.0247 -2.8133 -2.0489 28 1 5.8482 -2.2078 -1.9426 29 1 8.2985 -2.2121 -1.7401 30 1 5.4993 -3.0669 2.2173 31 1 9.7721 -3.4427 3.7817 32 1 9.5514 -4.4896 2.3563 33 1 10.0265 -1.4711 2.2324 34 1 11.2912 -2.7031 1.9885 35 1 10.1728 -3.5897 0.0452 36 1 10.1892 -1.8215 -0.1509 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261104444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:36 Heat of formation + Delta-G solvation = -52.151346 kcal Electronic energy + Delta-G solvation = -17636.971608 eV Core-core repulsion = 14891.311625 eV Total energy + Delta-G solvation = -2745.659983 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60272 -39.23348 -36.78844 -35.09602 -34.37599 -31.27246 -31.14862 -30.43763 -27.06309 -25.74036 -24.28459 -23.40447 -22.04797 -20.46355 -19.24309 -17.99297 -17.61452 -17.21486 -16.48884 -16.35227 -15.66050 -15.34880 -15.16248 -15.04485 -14.53567 -14.32985 -14.19822 -14.03662 -13.95401 -13.33045 -13.06725 -12.73354 -12.53815 -12.15197 -11.96408 -11.91312 -11.76494 -11.63153 -11.42094 -11.19975 -10.81981 -9.72118 -9.38819 -9.00376 -8.33494 -6.37430 0.38671 0.51965 1.29374 1.32862 1.44139 2.30937 2.38328 2.80352 3.01273 3.72113 3.77728 3.83134 3.94368 4.01497 4.14412 4.26002 4.35455 4.45857 4.58303 4.59437 4.71051 4.73545 4.78084 4.94497 5.05398 5.06419 5.14160 5.21724 5.29897 5.37763 5.53826 5.58655 5.74623 5.91213 6.18930 6.34651 6.56464 6.68865 6.69532 7.27674 8.82215 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.031644 B = 0.005403 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.641455 B = 5180.873436 C = 5356.294175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.942 3.058 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.526 4.526 8 H 0.044 0.956 9 C -0.028 4.028 10 C 0.145 3.855 11 H 0.064 0.936 12 N -0.829 5.829 13 C -0.041 4.041 14 C -0.149 4.149 15 C -0.083 4.083 16 C -0.174 4.174 17 C 0.120 3.880 18 C -0.170 4.170 19 O -0.339 6.339 20 C 0.049 3.951 21 C -0.155 4.155 22 C -0.074 4.074 23 H 0.267 0.733 24 H 0.010 0.990 25 H 0.020 0.980 26 H 0.345 0.655 27 H 0.338 0.662 28 H 0.129 0.871 29 H 0.153 0.847 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.819 -4.807 0.536 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.564 4.564 8 H 0.062 0.938 9 C -0.067 4.067 10 C 0.033 3.967 11 H 0.082 0.918 12 N -0.358 5.358 13 C -0.042 4.042 14 C -0.168 4.168 15 C -0.101 4.101 16 C -0.175 4.175 17 C 0.075 3.925 18 C -0.189 4.189 19 O -0.254 6.254 20 C -0.025 4.025 21 C -0.193 4.193 22 C -0.111 4.111 23 H 0.076 0.924 24 H 0.028 0.972 25 H 0.038 0.962 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.171 0.829 30 H 0.135 0.865 31 H 0.144 0.856 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 23.976 -5.339 1.008 24.584 hybrid contribution -1.034 1.676 -0.108 1.973 sum 22.942 -3.663 0.900 23.250 Atomic orbital electron populations 1.70039 1.07985 1.28093 1.52273 1.25852 0.95456 1.02969 0.94157 0.85781 0.79233 0.79165 0.79204 1.18906 1.20904 1.18270 1.21314 0.91109 0.93431 1.50552 0.93759 1.20200 0.94815 0.95201 0.96513 1.20072 0.89759 0.93300 0.93598 0.91806 1.59200 1.16944 1.56250 1.03366 1.19708 0.95041 0.96249 0.93170 1.20987 0.94113 1.03270 0.98380 1.21171 0.94088 0.97567 0.97236 1.20145 0.97575 1.06862 0.92959 1.18669 0.91592 0.97209 0.84992 1.20499 0.92786 1.07564 0.98063 1.85966 1.29044 1.84189 1.26236 1.23306 0.77502 0.98313 1.03394 1.22243 1.02288 0.99922 0.94805 1.20554 0.88569 1.04195 0.97798 0.92446 0.97167 0.96215 0.84233 0.84900 0.85296 0.82898 0.86550 0.85575 0.91104 0.91569 0.86674 0.88998 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 2 C 0.01 0.78 5.47 84.66 0.46 1.24 16 3 Si 0.94 44.99 27.47 68.60 1.88 46.87 16 4 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.26 -11.98 6.54 99.48 0.65 -11.33 16 7 C -0.53 -29.79 9.10 25.60 0.23 -29.55 16 8 H 0.04 2.71 7.39 -2.91 -0.02 2.69 16 9 C -0.03 -1.35 3.67 29.85 0.11 -1.24 16 10 C 0.14 6.00 2.99 44.17 0.13 6.13 16 11 H 0.06 2.84 8.00 -2.38 -0.02 2.82 16 12 N -0.83 -31.38 9.02 -171.80 -1.55 -32.93 16 13 C -0.04 -1.51 4.95 -19.92 -0.10 -1.61 16 14 C -0.15 -4.67 9.29 22.25 0.21 -4.46 16 15 C -0.08 -2.13 9.67 22.30 0.22 -1.91 16 16 C -0.17 -4.48 5.75 -19.75 -0.11 -4.59 16 17 C 0.12 3.74 6.47 22.52 0.15 3.89 16 18 C -0.17 -6.12 9.56 22.42 0.21 -5.91 16 19 O -0.34 -9.62 10.27 -91.77 -0.94 -10.57 16 20 C 0.05 0.85 7.03 72.12 0.51 1.36 16 21 C -0.16 -2.21 6.20 30.77 0.19 -2.02 16 22 C -0.07 -1.22 5.86 29.91 0.18 -1.05 16 23 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 24 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 25 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 26 H 0.34 13.96 7.90 -89.70 -0.71 13.25 16 27 H 0.34 11.59 7.35 -89.69 -0.66 10.93 16 28 H 0.13 3.73 6.67 -2.91 -0.02 3.71 16 29 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 30 H 0.12 4.28 8.03 -2.91 -0.02 4.25 16 31 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -68.02 292.80 1.74 -66.28 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -0.33 Total: 28.40 kcal Atomic # 6 Polarization: -42.10 SS G_CDS: 2.38 Total: -39.72 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -1.25 Total: -91.26 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.94 Total: -10.57 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -68.02 1.74 -66.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.130 kcal (2) G-P(sol) polarization free energy of solvation -68.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds