Wall clock time and date at job start Mon Mar 30 2020 06:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38291 * 120.02040 * 79.72585 * 13 10 9 15 15 C 1.38103 * 119.98131 * 179.81233 * 14 13 10 16 16 C 1.38506 * 120.31386 * 0.53752 * 15 14 13 17 17 C 1.38369 * 119.83458 * 359.55145 * 16 15 14 18 18 C 1.37970 * 120.01774 * 260.00006 * 13 10 9 19 19 O 1.35842 * 121.79693 * 180.60344 * 17 16 15 20 20 C 1.42828 * 117.87406 * 342.62986 * 19 17 16 21 21 C 1.53407 * 108.40190 * 49.15294 * 20 19 17 22 22 C 1.50775 * 118.76098 * 179.35465 * 16 15 14 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 27 27 H 1.00901 * 110.99845 * 63.95541 * 12 10 9 28 28 H 1.08005 * 120.00438 * 0.08298 * 14 13 10 29 29 H 1.08002 * 119.84361 * 180.26396 * 15 14 13 30 30 H 1.07998 * 119.89457 * 359.97438 * 18 13 10 31 31 H 1.09000 * 109.67591 * 289.42810 * 20 19 17 32 32 H 1.09000 * 109.70446 * 168.90270 * 20 19 17 33 33 H 1.09008 * 109.69340 * 175.64074 * 21 20 19 34 34 H 1.08999 * 109.73073 * 55.07094 * 21 20 19 35 35 H 1.08995 * 109.43868 * 282.16879 * 22 16 15 36 36 H 1.08999 * 109.43447 * 42.08607 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 7 3.0083 -3.6484 -1.2657 13 6 1.4957 -4.9642 0.1075 14 6 0.8889 -5.5166 -1.0056 15 6 0.2056 -6.7119 -0.8974 16 6 0.1146 -7.3569 0.3248 17 6 0.7192 -6.8058 1.4408 18 6 1.4097 -5.6031 1.3274 19 8 0.6654 -7.4104 2.6561 20 6 -0.3272 -8.4174 2.8576 21 6 -0.2637 -9.4020 1.6829 22 6 -0.6523 -8.6525 0.4061 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 2.3960 -3.7427 -2.0622 27 1 3.5700 -2.8134 -1.3381 28 1 0.9531 -5.0155 -1.9603 29 1 -0.2638 -7.1434 -1.7691 30 1 1.8806 -5.1687 2.1968 31 1 -1.3144 -7.9568 2.8975 32 1 -0.1307 -8.9457 3.7905 33 1 -0.9603 -10.2229 1.8535 34 1 0.7488 -9.7937 1.5854 35 1 -1.7214 -8.4409 0.4208 36 1 -0.4164 -9.2686 -0.4616 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261104447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:39 Heat of formation + Delta-G solvation = -35.486530 kcal Electronic energy + Delta-G solvation = -17565.328979 eV Core-core repulsion = 14820.391637 eV Total energy + Delta-G solvation = -2744.937342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42970 -37.84613 -35.22549 -33.94827 -32.40353 -29.98714 -29.87379 -27.93367 -25.79764 -24.39563 -23.00614 -22.11213 -20.67104 -19.27025 -17.08653 -16.44636 -16.39609 -15.89021 -15.03528 -14.62405 -14.42219 -14.22258 -13.93520 -13.45180 -13.05501 -12.87669 -12.75844 -12.43017 -12.17760 -11.77082 -11.39038 -11.20047 -10.98588 -10.85193 -10.73857 -10.57784 -10.34551 -10.13291 -9.85623 -9.15803 -8.48169 -8.30204 -7.83782 -7.59451 -6.07199 -4.11754 1.72193 1.83808 3.27525 3.34582 3.37618 3.46050 4.12463 4.40014 4.62260 4.69629 4.78912 5.04571 5.20693 5.27092 5.35048 5.44073 5.45381 5.56745 5.67117 5.77498 5.82837 5.90322 5.96793 6.07495 6.35474 6.47428 6.61867 6.75410 6.82426 7.08926 7.20625 7.48911 7.60366 7.73485 7.87000 8.06940 8.22897 8.34922 8.94947 9.53293 11.03474 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.039470 B = 0.004799 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.232092 B = 5833.332382 C = 6030.704362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.001 3.999 10 C 0.124 3.876 11 H 0.077 0.923 12 N -0.839 5.839 13 C -0.014 4.014 14 C -0.136 4.136 15 C -0.088 4.088 16 C -0.180 4.180 17 C 0.128 3.872 18 C -0.146 4.146 19 O -0.319 6.319 20 C 0.061 3.939 21 C -0.159 4.159 22 C -0.073 4.073 23 H 0.261 0.739 24 H 0.020 0.980 25 H 0.018 0.982 26 H 0.329 0.671 27 H 0.347 0.653 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.438 -16.687 1.204 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.037 4.037 10 C 0.013 3.987 11 H 0.096 0.904 12 N -0.368 5.368 13 C -0.015 4.015 14 C -0.154 4.154 15 C -0.106 4.106 16 C -0.181 4.181 17 C 0.083 3.917 18 C -0.165 4.165 19 O -0.233 6.233 20 C -0.014 4.014 21 C -0.196 4.196 22 C -0.110 4.110 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.036 0.964 26 H 0.141 0.859 27 H 0.160 0.840 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.114 -17.193 1.662 17.309 hybrid contribution -0.463 1.758 -0.329 1.848 sum -1.577 -15.435 1.333 15.573 Atomic orbital electron populations 1.69978 1.06122 1.26732 1.50128 1.25018 0.94819 0.99308 0.95054 0.86578 0.79878 0.83359 0.78107 1.20653 1.21223 1.19770 1.21162 0.92918 0.90787 1.51526 0.92460 1.19793 0.94413 0.91573 0.97957 1.20558 0.94645 0.90474 0.93035 0.90441 1.59256 1.27964 1.45829 1.03718 1.19912 0.94496 0.95203 0.91868 1.20799 0.99602 0.96159 0.98850 1.20773 0.98550 0.95270 0.95979 1.19605 1.05939 0.98889 0.93619 1.18570 0.97357 0.92077 0.83660 1.20423 1.04086 0.93421 0.98620 1.85980 1.54221 1.52261 1.30865 1.22888 0.91500 0.88325 0.98680 1.22219 1.03142 0.98588 0.95686 1.20388 0.99237 0.93310 0.98027 0.92910 0.96131 0.96362 0.85947 0.84008 0.86129 0.86442 0.85490 0.92050 0.87963 0.90203 0.90595 0.90963 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.31 8.55 -34.44 -0.29 -14.61 16 8 H 0.06 1.50 7.14 -52.49 -0.37 1.13 16 9 C 0.00 0.03 4.60 -27.88 -0.13 -0.10 16 10 C 0.12 2.60 2.99 -68.86 -0.21 2.40 16 11 H 0.08 1.67 8.00 -51.93 -0.42 1.25 16 12 N -0.84 -15.96 9.02 -5.65 -0.05 -16.01 16 13 C -0.01 -0.27 4.95 -104.70 -0.52 -0.79 16 14 C -0.14 -2.37 9.29 -39.61 -0.37 -2.74 16 15 C -0.09 -1.34 9.67 -39.53 -0.38 -1.73 16 16 C -0.18 -2.71 5.75 -104.44 -0.60 -3.31 16 17 C 0.13 2.16 6.47 -39.20 -0.25 1.91 16 18 C -0.15 -2.73 9.56 -39.34 -0.38 -3.10 16 19 O -0.32 -4.92 10.27 -19.24 -0.20 -5.12 16 20 C 0.06 0.67 7.03 37.37 0.26 0.93 16 21 C -0.16 -1.52 6.19 -26.49 -0.16 -1.69 16 22 C -0.07 -0.81 5.86 -27.81 -0.16 -0.97 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.33 5.94 7.36 -39.29 -0.29 5.65 16 27 H 0.35 6.66 7.90 -39.29 -0.31 6.35 16 28 H 0.12 2.00 6.68 -52.48 -0.35 1.65 16 29 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.13 2.30 8.03 -52.49 -0.42 1.88 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 296.41 15.07 4.47 4.47 Total: -1.00 -30.54 296.41 -8.46 -39.00 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.10 Total: 9.35 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -3.29 Total: -22.21 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.69 Total: -41.75 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.20 Total: -5.12 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.54 -8.46 -39.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.514 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds