Wall clock time and date at job start Mon Mar 30 2020 06:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38291 * 120.02040 * 79.72585 * 13 10 9 15 15 C 1.38103 * 119.98131 * 179.81233 * 14 13 10 16 16 C 1.38506 * 120.31386 * 0.53752 * 15 14 13 17 17 C 1.38369 * 119.83458 * 359.55145 * 16 15 14 18 18 C 1.37970 * 120.01774 * 260.00006 * 13 10 9 19 19 O 1.35842 * 121.79693 * 180.60344 * 17 16 15 20 20 C 1.42828 * 117.87406 * 342.62986 * 19 17 16 21 21 C 1.53407 * 108.40190 * 49.15294 * 20 19 17 22 22 C 1.50775 * 118.76098 * 179.35465 * 16 15 14 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 27 27 H 1.00901 * 110.99845 * 63.95541 * 12 10 9 28 28 H 1.08005 * 120.00438 * 0.08298 * 14 13 10 29 29 H 1.08002 * 119.84361 * 180.26396 * 15 14 13 30 30 H 1.07998 * 119.89457 * 359.97438 * 18 13 10 31 31 H 1.09000 * 109.67591 * 289.42810 * 20 19 17 32 32 H 1.09000 * 109.70446 * 168.90270 * 20 19 17 33 33 H 1.09008 * 109.69340 * 175.64074 * 21 20 19 34 34 H 1.08999 * 109.73073 * 55.07094 * 21 20 19 35 35 H 1.08995 * 109.43868 * 282.16879 * 22 16 15 36 36 H 1.08999 * 109.43447 * 42.08607 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 7 3.0083 -3.6484 -1.2657 13 6 1.4957 -4.9642 0.1075 14 6 0.8889 -5.5166 -1.0056 15 6 0.2056 -6.7119 -0.8974 16 6 0.1146 -7.3569 0.3248 17 6 0.7192 -6.8058 1.4408 18 6 1.4097 -5.6031 1.3274 19 8 0.6654 -7.4104 2.6561 20 6 -0.3272 -8.4174 2.8576 21 6 -0.2637 -9.4020 1.6829 22 6 -0.6523 -8.6525 0.4061 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 2.3960 -3.7427 -2.0622 27 1 3.5700 -2.8134 -1.3381 28 1 0.9531 -5.0155 -1.9603 29 1 -0.2638 -7.1434 -1.7691 30 1 1.8806 -5.1687 2.1968 31 1 -1.3144 -7.9568 2.8975 32 1 -0.1307 -8.9457 3.7905 33 1 -0.9603 -10.2229 1.8535 34 1 0.7488 -9.7937 1.5854 35 1 -1.7214 -8.4409 0.4208 36 1 -0.4164 -9.2686 -0.4616 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261104447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:39 Heat of formation + Delta-G solvation = -55.080521 kcal Electronic energy + Delta-G solvation = -17566.178638 eV Core-core repulsion = 14820.391637 eV Total energy + Delta-G solvation = -2745.787001 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.59122 -39.19724 -36.75735 -35.10550 -34.34420 -31.26032 -31.10357 -29.89220 -27.06577 -25.83063 -24.46775 -23.44159 -22.15993 -20.44831 -18.85258 -17.94535 -17.60039 -17.18102 -16.62356 -16.35438 -15.69672 -15.30473 -15.13717 -14.75001 -14.48353 -14.25059 -14.16674 -13.98825 -13.78376 -13.32233 -12.97124 -12.68867 -12.50279 -12.30370 -12.07825 -11.88993 -11.82263 -11.57557 -11.38254 -11.11643 -10.62747 -9.70947 -9.34225 -8.99781 -8.23012 -6.35713 0.40440 0.52597 1.39308 1.40310 1.51505 2.36042 2.40750 2.82241 3.10026 3.73945 3.78500 3.84873 3.95869 4.01537 4.20522 4.28215 4.36062 4.47971 4.59184 4.61925 4.72580 4.79623 4.83439 4.95405 5.09128 5.10866 5.22140 5.32196 5.38454 5.45826 5.56950 5.72721 5.77427 5.91451 6.13807 6.37154 6.56777 6.71530 6.80279 7.34339 8.88274 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.039470 B = 0.004799 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.232092 B = 5833.332382 C = 6030.704362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.013 3.987 10 C 0.139 3.861 11 H 0.066 0.934 12 N -0.826 5.826 13 C -0.040 4.040 14 C -0.150 4.150 15 C -0.084 4.084 16 C -0.176 4.176 17 C 0.120 3.880 18 C -0.171 4.171 19 O -0.338 6.338 20 C 0.048 3.952 21 C -0.153 4.153 22 C -0.075 4.075 23 H 0.263 0.737 24 H -0.017 1.017 25 H -0.004 1.004 26 H 0.336 0.664 27 H 0.346 0.654 28 H 0.124 0.876 29 H 0.152 0.848 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 -18.414 0.730 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.576 4.576 8 H 0.084 0.916 9 C -0.025 4.025 10 C 0.027 3.973 11 H 0.084 0.916 12 N -0.355 5.355 13 C -0.041 4.041 14 C -0.168 4.168 15 C -0.102 4.102 16 C -0.177 4.177 17 C 0.075 3.925 18 C -0.190 4.190 19 O -0.253 6.253 20 C -0.027 4.027 21 C -0.190 4.190 22 C -0.111 4.111 23 H 0.072 0.928 24 H 0.001 0.999 25 H 0.014 0.986 26 H 0.148 0.852 27 H 0.159 0.841 28 H 0.142 0.858 29 H 0.170 0.830 30 H 0.134 0.866 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.221 -18.943 1.184 19.019 hybrid contribution -0.493 2.178 -0.129 2.237 sum -1.713 -16.765 1.056 16.885 Atomic orbital electron populations 1.70120 1.07946 1.27772 1.51340 1.25964 0.95655 1.03351 0.94553 0.85423 0.78591 0.78344 0.78533 1.19566 1.21159 1.18726 1.21559 0.93518 0.91657 1.50906 0.91577 1.19638 0.94509 0.93421 0.94962 1.20227 0.93446 0.90141 0.93484 0.91568 1.59238 1.27519 1.45495 1.03233 1.19774 0.96169 0.95013 0.93110 1.20954 1.00192 0.97351 0.98348 1.21165 0.97427 0.94189 0.97412 1.20132 1.04695 1.00210 0.92619 1.18656 0.97128 0.91650 0.85025 1.20482 1.05476 0.94937 0.98139 1.85953 1.55744 1.53398 1.30213 1.23316 0.90691 0.87869 1.00787 1.22224 1.03875 0.98841 0.94042 1.20552 0.99321 0.91449 0.99823 0.92815 0.99866 0.98610 0.85175 0.84116 0.85782 0.82997 0.86582 0.91685 0.85287 0.86656 0.91068 0.89495 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.54 -30.01 8.55 25.60 0.22 -29.79 16 8 H 0.07 3.49 7.14 -2.91 -0.02 3.47 16 9 C 0.01 0.71 4.60 29.85 0.14 0.85 16 10 C 0.14 6.08 2.99 44.16 0.13 6.21 16 11 H 0.07 3.00 8.00 -2.39 -0.02 2.98 16 12 N -0.83 -31.91 9.02 -171.80 -1.55 -33.46 16 13 C -0.04 -1.60 4.95 -19.92 -0.10 -1.70 16 14 C -0.15 -5.26 9.29 22.25 0.21 -5.05 16 15 C -0.08 -2.43 9.67 22.30 0.22 -2.22 16 16 C -0.18 -4.98 5.75 -19.75 -0.11 -5.10 16 17 C 0.12 4.05 6.47 22.52 0.15 4.20 16 18 C -0.17 -6.66 9.56 22.42 0.21 -6.45 16 19 O -0.34 -10.25 10.27 -91.78 -0.94 -11.19 16 20 C 0.05 0.92 7.03 72.12 0.51 1.43 16 21 C -0.15 -2.36 6.19 30.75 0.19 -2.17 16 22 C -0.07 -1.38 5.86 29.89 0.18 -1.21 16 23 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 24 H -0.02 -1.03 8.14 -2.38 -0.02 -1.04 16 25 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.34 12.26 7.36 -89.69 -0.66 11.60 16 27 H 0.35 13.38 7.90 -89.69 -0.71 12.67 16 28 H 0.12 4.13 6.68 -2.91 -0.02 4.11 16 29 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.12 4.56 8.03 -2.91 -0.02 4.53 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -67.95 296.41 1.93 -66.01 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.28 Total: 29.54 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 2.39 Total: -40.37 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -1.27 Total: -90.01 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.94 Total: -11.19 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.95 1.93 -66.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.933 kcal (2) G-P(sol) polarization free energy of solvation -67.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds