Wall clock time and date at job start Mon Mar 30 2020 06:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86795 * 119.99882 * 2 1 4 4 H 1.48492 * 109.47512 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46771 * 120.00496 * 3 2 1 6 6 H 1.48504 * 109.47002 * 239.99965 * 3 2 1 7 7 C 1.39927 * 119.99338 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99730 * 154.57586 * 7 2 1 9 9 C 1.41037 * 120.00493 * 334.57116 * 7 2 1 10 10 C 1.40731 * 120.30643 * 334.48955 * 9 7 2 11 11 C 1.36448 * 119.94964 * 180.02562 * 10 9 7 12 12 C 1.38898 * 120.60242 * 0.02562 * 11 10 9 13 13 C 1.38167 * 120.62136 * 359.97438 * 12 11 10 14 14 C 1.38748 * 120.02948 * 359.71692 * 13 12 11 15 15 N 1.38725 * 120.29794 * 180.27733 * 14 13 12 16 16 C 1.46503 * 120.00008 * 0.30089 * 15 14 13 17 17 C 1.53172 * 109.54231 * 274.82042 * 16 15 14 18 18 C 1.53107 * 109.15714 * 183.23843 * 17 16 15 19 19 O 1.42900 * 109.48587 * 57.47672 * 18 17 16 20 20 C 1.42902 * 114.09968 * 298.88915 * 19 18 17 21 21 C 1.53095 * 109.41558 * 61.15679 * 20 19 18 22 22 H 0.96996 * 120.00214 * 174.16833 * 1 2 3 23 23 H 1.08003 * 120.02588 * 359.97438 * 10 9 7 24 24 H 1.08005 * 119.69763 * 180.02562 * 11 10 9 25 25 H 1.07995 * 119.69171 * 179.97438 * 12 11 10 26 26 H 1.08007 * 119.98214 * 179.97438 * 13 12 11 27 27 H 0.97001 * 120.00249 * 180.29878 * 15 14 13 28 28 H 1.08996 * 109.54372 * 34.99790 * 16 15 14 29 29 H 1.08999 * 109.53020 * 303.05735 * 17 16 15 30 30 H 1.09008 * 109.52447 * 63.24777 * 17 16 15 31 31 H 1.08997 * 109.40865 * 297.49521 * 18 17 16 32 32 H 1.08997 * 109.49112 * 177.50975 * 18 17 16 33 33 H 1.08993 * 109.47901 * 301.17671 * 20 19 18 34 34 H 1.08997 * 109.49239 * 181.14461 * 20 19 18 35 35 H 1.08996 * 109.52609 * 182.48558 * 21 20 19 36 36 H 1.09001 * 109.57471 * 62.32924 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2779 2.7464 0.0006 5 1 3.0966 1.6963 1.2124 6 1 3.0966 1.6964 -1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0099 -1.2571 -0.4021 9 6 1.4056 -2.3744 0.5234 10 6 0.3931 -2.2729 1.4955 11 6 -0.1847 -3.4023 1.9978 12 6 0.2173 -4.6573 1.5589 13 6 1.2090 -4.7852 0.6055 14 6 1.8097 -3.6538 0.0724 15 7 2.8020 -3.7755 -0.8894 16 6 3.2154 -5.1029 -1.3514 17 6 4.2769 -5.6680 -0.4027 18 6 4.7610 -7.0185 -0.9376 19 8 5.2718 -6.8513 -2.2617 20 6 4.3091 -6.3710 -3.2022 21 6 3.8085 -4.9936 -2.7595 22 1 -0.4850 -0.8356 -0.0853 23 1 0.0742 -1.3017 1.8443 24 1 -0.9617 -3.3197 2.7434 25 1 -0.2498 -5.5416 1.9668 26 1 1.5138 -5.7662 0.2720 27 1 3.2222 -2.9818 -1.2560 28 1 2.3519 -5.7678 -1.3700 29 1 5.1185 -4.9778 -0.3448 30 1 3.8451 -5.8013 0.5893 31 1 3.9276 -7.7208 -0.9555 32 1 5.5482 -7.4050 -0.2904 33 1 3.4699 -7.0648 -3.2497 34 1 4.7707 -6.2909 -4.1864 35 1 3.0420 -4.6449 -3.4515 36 1 4.6395 -4.2883 -2.7510 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:14 Heat of formation + Delta-G solvation = -54.809993 kcal Electronic energy + Delta-G solvation = -17980.852795 eV Core-core repulsion = 15235.077525 eV Total energy + Delta-G solvation = -2745.775270 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.70059 -39.56257 -36.66253 -35.57545 -32.99708 -32.10092 -31.05902 -29.33832 -26.85308 -25.21221 -24.53594 -22.89332 -21.97034 -21.06249 -19.69281 -17.80403 -17.48154 -16.95376 -16.61781 -16.11408 -15.72318 -15.63762 -15.18112 -15.02358 -14.63515 -14.10058 -13.97510 -13.77430 -13.44013 -13.18578 -12.78976 -12.43408 -12.36020 -12.29364 -11.98039 -11.94413 -11.64297 -11.32264 -11.21475 -10.81613 -10.67429 -10.56680 -9.46266 -9.12980 -8.17779 -6.14894 0.96173 1.17292 1.50215 1.64165 1.78055 2.36794 2.74417 2.81512 2.99073 3.63864 3.73200 3.89654 4.01420 4.10730 4.26908 4.40129 4.44602 4.50072 4.55643 4.69556 4.75749 4.76657 4.84881 4.99935 5.05624 5.10668 5.24672 5.27261 5.46126 5.62309 5.76436 5.88901 6.11092 6.22036 6.26068 6.43666 6.61256 7.00972 7.10997 7.22435 8.17609 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022896 B = 0.006845 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.646018 B = 4089.462760 C = 4976.917035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.002 3.998 3 Si 1.112 2.888 4 H -0.276 1.276 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.215 4.215 11 C -0.145 4.145 12 C -0.198 4.198 13 C -0.179 4.179 14 C 0.115 3.885 15 N -0.741 5.741 16 C 0.155 3.845 17 C -0.165 4.165 18 C 0.068 3.932 19 O -0.398 6.398 20 C 0.068 3.932 21 C -0.157 4.157 22 H 0.280 0.720 23 H 0.081 0.919 24 H 0.103 0.897 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.391 0.609 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.522 -9.871 -4.668 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.212 4.212 3 Si 0.931 3.069 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.585 4.585 8 H 0.087 0.913 9 C 0.017 3.983 10 C -0.236 4.236 11 C -0.165 4.165 12 C -0.217 4.217 13 C -0.202 4.202 14 C 0.014 3.986 15 N -0.372 5.372 16 C 0.049 3.951 17 C -0.204 4.204 18 C -0.009 4.009 19 O -0.317 6.317 20 C -0.009 4.009 21 C -0.195 4.195 22 H 0.092 0.908 23 H 0.099 0.901 24 H 0.121 0.879 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.225 0.775 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.097 0.903 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.470 -8.460 -4.705 12.227 hybrid contribution -0.385 -0.994 0.219 1.088 sum 7.085 -9.453 -4.486 12.637 Atomic orbital electron populations 1.70576 1.08977 1.32857 1.33425 1.28166 0.95699 1.07070 0.90311 0.83055 0.74718 0.70404 0.78755 1.20092 1.19435 1.18246 1.20257 1.02804 0.95205 1.40258 0.91319 1.17663 0.94864 0.92147 0.93665 1.20621 1.04246 0.97025 1.01712 1.20439 1.01208 0.93135 1.01689 1.20526 1.02018 0.96177 1.02991 1.20416 1.01638 0.95934 1.02225 1.18055 0.93999 0.93177 0.93339 1.44182 1.41648 1.06704 1.44681 1.20857 0.95887 0.84934 0.93401 1.22662 0.99151 0.98538 1.00081 1.22627 1.00089 0.94769 0.83456 1.87892 1.38322 1.86124 1.19363 1.22653 0.92768 0.92385 0.93126 1.22436 1.01348 0.99954 0.95780 0.90806 0.90054 0.87885 0.86357 0.86488 0.77461 0.91364 0.92311 0.91637 0.91883 0.87369 0.91808 0.86649 0.90261 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.76 12.32 21.83 0.27 -46.49 16 2 C 0.00 0.09 4.94 85.24 0.42 0.51 16 3 Si 1.11 44.72 30.00 68.60 2.06 46.77 16 4 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 7 C -0.56 -29.83 8.43 23.37 0.20 -29.63 16 8 H 0.07 3.54 6.77 -2.91 -0.02 3.52 16 9 C 0.02 1.15 5.31 -21.17 -0.11 1.04 16 10 C -0.22 -11.56 7.89 22.46 0.18 -11.39 16 11 C -0.14 -6.88 9.96 22.01 0.22 -6.66 16 12 C -0.20 -8.55 10.04 22.41 0.22 -8.32 16 13 C -0.18 -7.68 8.86 22.37 0.20 -7.49 16 14 C 0.12 5.43 6.67 38.99 0.26 5.69 16 15 N -0.74 -29.45 5.16 -317.05 -1.63 -31.09 16 16 C 0.15 4.73 2.22 45.11 0.10 4.83 16 17 C -0.16 -4.60 5.66 30.69 0.17 -4.43 16 18 C 0.07 1.48 6.84 72.02 0.49 1.98 16 19 O -0.40 -9.48 10.77 -148.98 -1.60 -11.09 16 20 C 0.07 1.37 6.84 72.01 0.49 1.86 16 21 C -0.16 -3.92 5.61 30.69 0.17 -3.75 16 22 H 0.28 16.43 6.69 -92.71 -0.62 15.81 16 23 H 0.08 4.64 6.49 -2.91 -0.02 4.62 16 24 H 0.10 4.39 8.06 -2.91 -0.02 4.36 16 25 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 26 H 0.12 4.32 6.06 -2.91 -0.02 4.30 16 27 H 0.39 16.04 6.84 -92.71 -0.63 15.41 16 28 H 0.07 2.11 6.50 -2.39 -0.02 2.09 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.98 7.67 -2.38 -0.02 1.96 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -61.13 288.95 2.70 -58.43 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: 0.59 Total: 39.23 kcal Atomic # 6 Polarization: -58.79 SS G_CDS: 3.02 Total: -55.77 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -1.37 Total: -77.58 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -1.60 Total: -11.09 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.06 Total: 46.77 kcal Total: -61.13 2.70 -58.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.618 kcal (2) G-P(sol) polarization free energy of solvation -61.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds