Wall clock time and date at job start Mon Mar 30 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47118 * 2 1 4 4 O 1.20962 * 123.60578 * 269.97797 * 3 2 1 5 5 C 1.34380 * 112.71073 * 180.02562 * 4 3 2 6 6 O 1.21743 * 127.34613 * 179.97438 * 5 4 3 7 7 C 1.46818 * 105.31262 * 359.97438 * 5 4 3 8 8 C 1.38892 * 136.32461 * 179.97438 * 7 5 4 9 9 C 1.36858 * 119.57666 * 180.02562 * 8 7 5 10 10 C 1.38851 * 120.47880 * 0.02562 * 9 8 7 11 11 C 1.37806 * 120.83797 * 359.97438 * 10 9 8 12 12 C 1.50703 * 120.16386 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47064 * 264.99625 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.36907 * 123.60166 * 90.27599 * 3 2 1 22 22 H 1.09000 * 109.46740 * 299.99162 * 1 2 3 23 23 H 1.08992 * 109.47108 * 59.99665 * 1 2 3 24 24 H 1.09004 * 109.46858 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46824 * 240.00324 * 2 1 3 26 26 H 1.08995 * 109.47573 * 120.00924 * 2 1 3 27 27 H 1.07999 * 120.21425 * 359.97438 * 8 7 5 28 28 H 1.07998 * 119.76050 * 179.97438 * 9 8 7 29 29 H 1.08003 * 119.57755 * 179.97438 * 10 9 8 30 30 H 1.09002 * 109.47152 * 144.99718 * 12 11 10 31 31 H 1.09001 * 109.46980 * 24.99819 * 12 11 10 32 32 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 8 2.2418 2.0123 -1.0075 5 6 2.6821 3.2562 -0.7535 6 8 2.9857 4.1121 -1.5643 7 6 2.7191 3.3631 0.7104 8 6 3.0640 4.3375 1.6380 9 6 2.9660 4.0622 2.9751 10 6 2.5259 2.8183 3.4076 11 6 2.1789 1.8381 2.5032 12 6 1.7036 0.4932 2.9894 13 6 2.8663 -0.4646 3.0337 14 1 3.8510 -0.1325 2.7395 15 6 2.6731 -1.7646 3.4506 16 7 1.4741 -2.1687 3.8093 17 14 4.1144 -2.9515 3.5061 18 1 5.1512 -2.4283 4.4316 19 1 3.6460 -4.2768 3.9851 20 1 4.6916 -3.0933 2.1452 21 6 2.2760 2.0937 1.1403 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 3.4081 5.3061 1.3065 28 1 3.2339 4.8175 3.6990 29 1 2.4545 2.6166 4.4662 30 1 0.9424 0.1095 2.3101 31 1 1.2801 0.5969 3.9884 32 1 1.3381 -3.0834 4.1023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261341149.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:17 Heat of formation + Delta-G solvation = 17.808050 kcal Electronic energy + Delta-G solvation = -18094.733359 eV Core-core repulsion = 15216.273949 eV Total energy + Delta-G solvation = -2878.459410 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.50932 -39.78778 -39.36257 -36.23642 -35.01738 -33.05407 -32.81570 -30.41281 -28.83622 -25.89068 -24.72122 -24.45098 -24.15751 -20.71827 -19.34919 -19.14410 -18.57741 -18.36338 -17.10634 -16.59595 -16.37346 -15.97185 -15.29511 -15.05066 -14.72997 -14.50560 -14.36902 -13.58739 -13.52511 -13.35625 -12.92809 -12.89679 -12.83500 -12.44911 -12.39537 -12.03162 -11.65855 -11.53986 -11.15148 -10.84921 -10.54315 -9.87448 -8.46828 -8.11687 -6.27129 -0.24187 0.52147 0.86248 1.34443 1.43026 1.46248 1.52253 2.28595 2.41758 2.81897 3.14310 3.26253 3.64927 4.00202 4.07372 4.12457 4.34240 4.40221 4.49477 4.64164 4.76249 4.96893 5.00813 5.03739 5.16403 5.34308 5.48174 5.52537 5.64700 5.79523 5.87182 5.98587 6.20901 6.23605 6.83644 7.10312 7.40742 8.90967 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023367 B = 0.008354 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.980838 B = 3350.973662 C = 3863.743265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.117 3.883 3 N -0.429 5.429 4 O -0.062 6.062 5 C 0.483 3.517 6 O -0.501 6.501 7 C -0.296 4.296 8 C -0.018 4.018 9 C -0.155 4.155 10 C -0.052 4.052 11 C -0.101 4.101 12 C 0.054 3.946 13 C -0.523 4.523 14 H 0.047 0.953 15 C 0.025 3.975 16 N -0.914 5.914 17 Si 0.943 3.057 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.158 3.842 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.151 0.849 28 H 0.168 0.832 29 H 0.144 0.856 30 H 0.033 0.967 31 H 0.013 0.987 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 5.958 -2.392 6.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.001 3.999 3 N -0.170 5.170 4 O -0.077 6.077 5 C 0.333 3.667 6 O -0.392 6.392 7 C -0.303 4.303 8 C -0.037 4.037 9 C -0.175 4.175 10 C -0.071 4.071 11 C -0.104 4.104 12 C 0.017 3.983 13 C -0.561 4.561 14 H 0.065 0.935 15 C -0.175 4.175 16 N -0.553 5.553 17 Si 0.769 3.231 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.197 1.197 21 C 0.051 3.949 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.112 0.888 25 H 0.125 0.875 26 H 0.142 0.858 27 H 0.168 0.832 28 H 0.185 0.815 29 H 0.162 0.838 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.372 5.839 -3.098 6.620 hybrid contribution 0.636 -0.862 -0.043 1.072 sum 0.264 4.977 -3.141 5.891 Atomic orbital electron populations 1.22191 0.93482 1.04104 1.02184 1.22608 0.96252 0.73822 1.07169 1.43610 1.66215 1.12267 0.94921 1.84250 1.74320 1.27019 1.22071 1.20765 0.77190 0.79240 0.89510 1.90918 1.51649 1.39154 1.57467 1.20443 1.18568 0.98003 0.93316 1.20259 0.94428 0.97445 0.91531 1.21089 1.03501 0.97609 0.95258 1.21368 0.93790 0.91984 0.99966 1.19533 1.03798 0.98925 0.88188 1.18275 0.96039 0.87659 0.96337 1.21195 0.94795 0.95406 1.44735 0.93485 1.25581 0.97604 0.99571 0.94766 1.70013 1.22433 1.18248 1.44636 0.85835 0.80156 0.78368 0.78732 1.20044 1.20869 1.19651 1.18959 0.96019 0.90323 0.89582 0.93047 0.91452 0.88750 0.87543 0.85833 0.83179 0.81455 0.83811 0.94867 0.96857 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.75 9.73 71.98 0.70 -4.05 16 2 C 0.12 3.93 6.17 86.38 0.53 4.46 16 3 N -0.43 -16.00 3.32 -339.70 -1.13 -17.13 16 4 O -0.06 -2.33 10.83 91.37 0.99 -1.34 16 5 C 0.48 18.85 8.95 70.07 0.63 19.48 16 6 O -0.50 -21.06 18.06 18.57 0.34 -20.73 16 7 C -0.30 -10.84 6.54 -20.16 -0.13 -10.97 16 8 C -0.02 -0.54 10.04 22.10 0.22 -0.31 16 9 C -0.16 -4.16 9.99 22.09 0.22 -3.94 16 10 C -0.05 -1.69 9.65 22.31 0.22 -1.47 16 11 C -0.10 -3.96 5.08 -19.78 -0.10 -4.06 16 12 C 0.05 2.43 4.41 29.10 0.13 2.56 16 13 C -0.52 -25.86 7.56 25.60 0.19 -25.67 16 14 H 0.05 2.38 7.74 -2.91 -0.02 2.35 16 15 C 0.03 1.25 5.46 84.66 0.46 1.72 16 16 N -0.91 -48.14 13.29 21.45 0.28 -47.85 16 17 Si 0.94 40.16 29.54 68.60 2.03 42.18 16 18 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 C 0.16 6.15 6.77 39.25 0.27 6.41 16 22 H 0.05 1.68 7.06 -2.39 -0.02 1.66 16 23 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 25 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 26 H 0.12 4.94 4.49 -2.39 -0.01 4.93 16 27 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.03 1.52 4.49 -2.39 -0.01 1.51 16 31 H 0.01 0.64 8.05 -2.39 -0.02 0.62 16 32 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 Total: -1.00 -58.61 275.43 6.99 -51.63 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.14 Total: 9.08 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 3.33 Total: -15.84 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -0.84 Total: -64.98 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 1.33 Total: -22.07 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.18 kcal Total: -58.61 6.99 -51.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341149.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.437 kcal (2) G-P(sol) polarization free energy of solvation -58.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds