Wall clock time and date at job start Mon Mar 30 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47256 * 2 1 4 4 O 1.20956 * 123.60073 * 270.02272 * 3 2 1 5 5 C 1.34385 * 112.71611 * 179.97438 * 4 3 2 6 6 O 1.21741 * 127.34095 * 179.97438 * 5 4 3 7 7 C 1.46818 * 105.31164 * 359.80115 * 5 4 3 8 8 C 1.36912 * 123.60408 * 90.00270 * 3 2 1 9 9 C 1.38965 * 135.05631 * 0.02562 * 8 3 2 10 10 C 1.37850 * 119.66973 * 179.97438 * 9 8 3 11 11 C 1.38809 * 120.83473 * 0.02562 * 10 9 8 12 12 C 1.36898 * 120.47738 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.20772 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46869 * 264.99535 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.09006 * 109.47103 * 300.00219 * 1 2 3 23 23 H 1.09005 * 109.47014 * 59.99665 * 1 2 3 24 24 H 1.08998 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46943 * 240.00284 * 2 1 3 26 26 H 1.08991 * 109.47052 * 120.00412 * 2 1 3 27 27 H 1.08001 * 120.16570 * 0.02562 * 9 8 3 28 28 H 1.08006 * 119.58255 * 180.02562 * 10 9 8 29 29 H 1.07997 * 119.75935 * 179.97438 * 11 10 9 30 30 H 1.09004 * 109.47210 * 144.99829 * 13 12 11 31 31 H 1.08994 * 109.47551 * 24.99481 * 13 12 11 32 32 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 8 2.2411 2.0125 -1.0075 5 6 2.6806 3.2568 -0.7537 6 8 2.9833 4.1128 -1.5647 7 6 2.7139 3.3652 0.7101 8 6 2.2710 2.0956 1.1403 9 6 2.1804 1.8379 2.5028 10 6 2.5276 2.8184 3.4074 11 6 2.9667 4.0622 2.9749 12 6 3.0636 4.3378 1.6374 13 6 3.5416 5.6899 1.1746 14 6 2.3537 6.5767 0.9029 15 1 1.3528 6.1990 1.0510 16 6 2.5449 7.8722 0.4712 17 7 3.7638 8.3321 0.2912 18 14 1.0727 8.9737 0.1419 19 1 -0.1786 8.2235 0.4188 20 1 1.1398 10.1665 1.0240 21 1 1.0865 9.4070 -1.2785 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.8405 0.8738 2.8514 28 1 2.4570 2.6164 4.4660 29 1 3.2338 4.8179 3.6987 30 1 4.1261 5.5758 0.2616 31 1 4.1619 6.1408 1.9491 32 1 3.8982 9.2434 -0.0128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261341941.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:22 Heat of formation + Delta-G solvation = 34.190079 kcal Electronic energy + Delta-G solvation = -17770.802141 eV Core-core repulsion = 14893.053109 eV Total energy + Delta-G solvation = -2877.749032 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.94067 -38.35340 -37.53141 -34.70226 -33.37228 -31.63684 -31.21358 -28.96573 -27.10896 -24.24521 -23.62215 -23.11191 -22.36056 -19.08159 -18.01406 -17.58562 -17.19843 -16.24307 -15.73312 -15.09307 -14.60336 -14.29928 -14.05653 -13.61708 -13.43716 -12.81300 -12.65573 -12.47070 -12.12131 -11.95201 -11.71566 -11.48553 -11.21587 -11.06461 -10.56371 -10.50468 -9.88725 -9.63753 -9.33708 -9.23644 -8.35901 -8.30293 -7.11435 -5.96917 -3.99396 1.28747 1.90870 2.14231 3.02030 3.35593 3.42719 3.47313 3.72808 4.23325 4.53239 4.57201 4.81428 4.88304 5.04104 5.10860 5.27101 5.38681 5.41651 5.60285 5.60729 5.80975 5.92340 6.03244 6.36025 6.43700 6.81386 6.94699 7.04909 7.35106 7.57641 7.80357 7.96349 8.05988 8.33954 8.51138 9.02650 9.62942 11.14032 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.007179 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.236158 B = 3899.564374 C = 4299.947615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.147 3.853 3 N -0.445 5.445 4 O -0.083 6.083 5 C 0.494 3.506 6 O -0.430 6.430 7 C -0.264 4.264 8 C 0.158 3.842 9 C -0.193 4.193 10 C -0.037 4.037 11 C -0.186 4.186 12 C 0.092 3.908 13 C 0.039 3.961 14 C -0.504 4.504 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.042 0.958 31 H 0.034 0.966 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 -17.744 4.541 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.029 3.971 3 N -0.189 5.189 4 O -0.099 6.099 5 C 0.339 3.661 6 O -0.313 6.313 7 C -0.270 4.270 8 C 0.054 3.946 9 C -0.216 4.216 10 C -0.056 4.056 11 C -0.206 4.206 12 C 0.091 3.909 13 C 0.002 3.998 14 C -0.542 4.542 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.723 3.277 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.138 0.862 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.230 -17.462 3.696 18.343 hybrid contribution -0.828 0.722 -0.308 1.141 sum -5.058 -16.739 3.389 17.812 Atomic orbital electron populations 1.22324 0.94967 1.02817 1.03660 1.21721 0.94881 0.75888 1.04583 1.42876 1.68795 1.11553 0.95680 1.84312 1.76675 1.27920 1.20983 1.20728 0.77095 0.78651 0.89616 1.91074 1.46812 1.36850 1.56528 1.20121 1.16907 0.96181 0.93833 1.18924 0.95527 0.90870 0.89305 1.19603 1.12931 1.01163 0.87905 1.21031 0.93417 0.92469 0.98692 1.20753 1.07120 0.97363 0.95369 1.19824 0.85249 0.94845 0.90995 1.18533 0.97347 0.86016 0.97902 1.20878 0.91857 0.96165 1.45270 0.92645 1.24949 0.95864 0.97963 0.95264 1.69963 1.20075 1.16548 1.46453 0.86472 0.82829 0.80376 0.77989 1.19760 1.20926 1.20872 0.91593 0.91642 0.90569 0.88980 0.88249 0.86173 0.85604 0.85229 0.94010 0.94737 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 10.24 37.16 0.38 -1.13 16 2 C 0.15 1.38 6.88 -4.04 -0.03 1.35 16 3 N -0.45 -6.81 3.32 -58.72 -0.19 -7.01 16 4 O -0.08 -1.53 10.83 -7.87 -0.09 -1.61 16 5 C 0.49 11.19 8.91 34.20 0.30 11.50 16 6 O -0.43 -11.37 17.53 -18.96 -0.33 -11.70 16 7 C -0.26 -5.68 6.26 -105.08 -0.66 -6.34 16 8 C 0.16 2.68 6.83 -84.21 -0.57 2.11 16 9 C -0.19 -2.71 9.94 -39.45 -0.39 -3.10 16 10 C -0.04 -0.54 10.01 -39.51 -0.40 -0.93 16 11 C -0.19 -3.42 9.62 -39.86 -0.38 -3.80 16 12 C 0.09 2.06 5.05 -104.88 -0.53 1.53 16 13 C 0.04 1.04 5.04 -29.03 -0.15 0.90 16 14 C -0.50 -14.78 9.09 -34.44 -0.31 -15.09 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 18 Si 0.90 22.61 29.54 -169.99 -5.02 17.58 16 19 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 27 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.04 1.25 7.63 -51.93 -0.40 0.85 16 31 H 0.03 0.94 8.05 -51.93 -0.42 0.52 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 285.66 15.07 4.30 4.30 Total: -1.00 -34.58 285.66 -7.16 -41.73 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: -3.73 Total: -5.30 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -2.83 Total: -11.30 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.54 Total: -33.71 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.42 Total: -13.32 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.58 -7.16 -41.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341941.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.925 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds