Wall clock time and date at job start Mon Mar 30 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47256 * 2 1 4 4 O 1.20956 * 123.60073 * 270.02272 * 3 2 1 5 5 C 1.34385 * 112.71611 * 179.97438 * 4 3 2 6 6 O 1.21741 * 127.34095 * 179.97438 * 5 4 3 7 7 C 1.46818 * 105.31164 * 359.80115 * 5 4 3 8 8 C 1.36912 * 123.60408 * 90.00270 * 3 2 1 9 9 C 1.38965 * 135.05631 * 0.02562 * 8 3 2 10 10 C 1.37850 * 119.66973 * 179.97438 * 9 8 3 11 11 C 1.38809 * 120.83473 * 0.02562 * 10 9 8 12 12 C 1.36898 * 120.47738 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.20772 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46869 * 264.99535 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.09006 * 109.47103 * 300.00219 * 1 2 3 23 23 H 1.09005 * 109.47014 * 59.99665 * 1 2 3 24 24 H 1.08998 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46943 * 240.00284 * 2 1 3 26 26 H 1.08991 * 109.47052 * 120.00412 * 2 1 3 27 27 H 1.08001 * 120.16570 * 0.02562 * 9 8 3 28 28 H 1.08006 * 119.58255 * 180.02562 * 10 9 8 29 29 H 1.07997 * 119.75935 * 179.97438 * 11 10 9 30 30 H 1.09004 * 109.47210 * 144.99829 * 13 12 11 31 31 H 1.08994 * 109.47551 * 24.99481 * 13 12 11 32 32 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 8 2.2411 2.0125 -1.0075 5 6 2.6806 3.2568 -0.7537 6 8 2.9833 4.1128 -1.5647 7 6 2.7139 3.3652 0.7101 8 6 2.2710 2.0956 1.1403 9 6 2.1804 1.8379 2.5028 10 6 2.5276 2.8184 3.4074 11 6 2.9667 4.0622 2.9749 12 6 3.0636 4.3378 1.6374 13 6 3.5416 5.6899 1.1746 14 6 2.3537 6.5767 0.9029 15 1 1.3528 6.1990 1.0510 16 6 2.5449 7.8722 0.4712 17 7 3.7638 8.3321 0.2912 18 14 1.0727 8.9737 0.1419 19 1 -0.1786 8.2235 0.4188 20 1 1.1398 10.1665 1.0240 21 1 1.0865 9.4070 -1.2785 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.8405 0.8738 2.8514 28 1 2.4570 2.6164 4.4660 29 1 3.2338 4.8179 3.6987 30 1 4.1261 5.5758 0.2616 31 1 4.1619 6.1408 1.9491 32 1 3.8982 9.2434 -0.0128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261341941.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:20 Heat of formation + Delta-G solvation = 12.788544 kcal Electronic energy + Delta-G solvation = -17771.730181 eV Core-core repulsion = 14893.053109 eV Total energy + Delta-G solvation = -2878.677072 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.36208 -39.80595 -39.22102 -35.93453 -35.29715 -33.13691 -32.79097 -30.19615 -28.95786 -25.92456 -24.83171 -24.43725 -24.03917 -20.51653 -19.36120 -19.07095 -18.60741 -18.50646 -17.12071 -16.61725 -16.40985 -15.60159 -15.28455 -14.96508 -14.79579 -14.58300 -14.40461 -13.59358 -13.44339 -13.39761 -13.04853 -13.01209 -12.77276 -12.49320 -12.40655 -12.12983 -11.79471 -11.64799 -11.07410 -10.71858 -10.62967 -9.87795 -8.48662 -8.21230 -6.34995 -0.17371 0.52687 0.89765 1.32462 1.35956 1.43510 1.48001 2.22975 2.36321 2.84535 3.08707 3.39142 3.65234 4.03929 4.11907 4.15001 4.37825 4.39708 4.45958 4.61755 4.81520 4.88734 4.98042 5.09365 5.23296 5.28477 5.29378 5.52457 5.67679 5.73831 5.91999 6.03615 6.13889 6.38406 6.75075 6.99297 7.31763 8.88035 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.007179 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.236158 B = 3899.564374 C = 4299.947615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.132 3.868 3 N -0.438 5.438 4 O -0.074 6.074 5 C 0.475 3.525 6 O -0.498 6.498 7 C -0.308 4.308 8 C 0.168 3.832 9 C -0.164 4.164 10 C -0.015 4.015 11 C -0.193 4.193 12 C 0.049 3.951 13 C 0.050 3.950 14 C -0.519 4.519 15 H 0.049 0.951 16 C 0.002 3.998 17 N -0.930 5.930 18 Si 0.966 3.034 19 H -0.265 1.265 20 H -0.264 1.264 21 H -0.282 1.282 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.141 0.859 27 H 0.181 0.819 28 H 0.183 0.817 29 H 0.132 0.868 30 H -0.008 1.008 31 H 0.016 0.984 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.641 -21.235 7.240 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.017 3.983 3 N -0.181 5.181 4 O -0.089 6.089 5 C 0.324 3.676 6 O -0.387 6.387 7 C -0.315 4.315 8 C 0.061 3.939 9 C -0.186 4.186 10 C -0.033 4.033 11 C -0.213 4.213 12 C 0.048 3.952 13 C 0.013 3.987 14 C -0.557 4.557 15 H 0.067 0.933 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.790 3.210 19 H -0.189 1.189 20 H -0.189 1.189 21 H -0.208 1.208 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.131 0.869 25 H 0.127 0.873 26 H 0.159 0.841 27 H 0.199 0.801 28 H 0.200 0.800 29 H 0.150 0.850 30 H 0.010 0.990 31 H 0.035 0.965 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.521 -21.031 6.410 22.933 hybrid contribution -0.152 1.541 -1.069 1.882 sum -6.673 -19.490 5.340 21.282 Atomic orbital electron populations 1.22316 0.93970 1.04760 1.02306 1.22446 0.95634 0.72626 1.07547 1.43854 1.67287 1.12614 0.94373 1.84284 1.75297 1.26652 1.22660 1.21084 0.77107 0.79236 0.90180 1.91006 1.50385 1.39301 1.57984 1.20143 1.19648 0.98791 0.92907 1.19229 0.94696 0.88962 0.90997 1.20327 1.09398 1.03194 0.85662 1.21587 0.90153 0.90014 1.01588 1.20907 1.07289 0.99754 0.93307 1.19488 0.89275 0.93081 0.93343 1.18160 0.96046 0.89346 0.95116 1.21191 0.92301 0.97016 1.45183 0.93259 1.25943 0.99053 0.99675 0.94897 1.70094 1.22399 1.17157 1.47348 0.85393 0.79063 0.78641 0.77943 1.18919 1.18895 1.20805 0.92031 0.93964 0.86894 0.87254 0.84080 0.80138 0.80025 0.85036 0.98961 0.96534 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 10.24 71.98 0.74 -1.46 16 2 C 0.13 1.84 6.88 86.38 0.59 2.43 16 3 N -0.44 -12.32 3.32 -339.69 -1.13 -13.45 16 4 O -0.07 -2.78 10.83 91.33 0.99 -1.79 16 5 C 0.48 23.01 8.91 70.07 0.62 23.64 16 6 O -0.50 -29.07 17.53 18.57 0.33 -28.75 16 7 C -0.31 -13.69 6.26 -20.16 -0.13 -13.81 16 8 C 0.17 5.24 6.83 39.25 0.27 5.50 16 9 C -0.16 -3.57 9.94 22.35 0.22 -3.35 16 10 C -0.01 -0.35 10.01 22.31 0.22 -0.12 16 11 C -0.19 -6.87 9.62 22.09 0.21 -6.66 16 12 C 0.05 2.30 5.05 -20.03 -0.10 2.20 16 13 C 0.05 2.95 5.04 29.10 0.15 3.10 16 14 C -0.52 -32.36 9.09 25.60 0.23 -32.13 16 15 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 16 C 0.00 0.13 5.46 84.66 0.46 0.60 16 17 N -0.93 -60.42 13.29 21.45 0.28 -60.14 16 18 Si 0.97 47.93 29.54 68.60 2.03 49.96 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 22 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 23 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.14 0.90 8.05 -2.39 -0.02 0.88 16 27 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 28 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 29 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 30 H -0.01 -0.53 7.63 -2.38 -0.02 -0.55 16 31 H 0.02 0.98 8.05 -2.39 -0.02 0.96 16 32 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 Total: -1.00 -86.34 285.66 7.12 -79.22 By element: Atomic # 1 Polarization: -6.11 SS G_CDS: 1.12 Total: -4.99 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 3.50 Total: -20.06 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -0.84 Total: -73.59 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: 1.32 Total: -30.54 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -86.34 7.12 -79.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341941.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.009 kcal (2) G-P(sol) polarization free energy of solvation -86.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds