Wall clock time and date at job start Mon Mar 30 2020 05:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 N 1.46500 * 109.47055 * 240.00395 * 2 1 3 5 5 O 1.20955 * 123.48654 * 69.85116 * 4 2 1 6 6 C 1.34467 * 112.55096 * 179.97438 * 5 4 2 7 7 O 1.21735 * 127.45132 * 180.02562 * 6 5 4 8 8 C 1.46855 * 105.09879 * 359.97438 * 6 5 4 9 9 C 1.39019 * 136.20631 * 180.02562 * 8 6 5 10 10 C 1.38526 * 120.02161 * 179.41062 * 9 8 6 11 11 C 1.37925 * 120.68221 * 0.44474 * 10 9 8 12 12 C 1.40624 * 120.54691 * 359.72211 * 11 10 9 13 13 C 1.40865 * 120.36521 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99964 * 219.78388 * 13 12 11 15 15 C 1.39972 * 119.99937 * 39.78330 * 13 12 11 16 16 N 1.30854 * 119.99878 * 10.01515 * 15 13 12 17 17 Si 1.86801 * 119.99703 * 190.01348 * 15 13 12 18 18 H 1.48498 * 109.47066 * 90.00259 * 17 15 13 19 19 H 1.48501 * 109.46689 * 209.99937 * 17 15 13 20 20 H 1.48496 * 109.47284 * 329.99763 * 17 15 13 21 21 C 1.35820 * 123.48813 * 249.55545 * 4 2 1 22 22 H 1.09001 * 109.47213 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47112 * 299.99686 * 1 2 3 24 24 H 1.08998 * 109.47273 * 59.99418 * 1 2 3 25 25 H 1.09000 * 109.47422 * 119.99817 * 2 1 3 26 26 H 1.08998 * 109.47512 * 300.00435 * 3 2 1 27 27 H 1.09008 * 109.46861 * 60.00160 * 3 2 1 28 28 H 1.08999 * 109.47181 * 180.02562 * 3 2 1 29 29 H 1.07992 * 119.98856 * 359.96718 * 9 8 6 30 30 H 1.08005 * 119.65358 * 180.14633 * 10 9 8 31 31 H 1.07990 * 119.72892 * 179.70193 * 11 10 9 32 32 H 0.97000 * 119.99476 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 8 1.9131 -0.2428 -2.3149 6 6 2.4365 -1.0576 -3.2478 7 8 2.4779 -0.8754 -4.4507 8 6 2.9487 -2.2142 -2.5017 9 6 3.5964 -3.4037 -2.8150 10 6 3.9517 -4.2856 -1.8076 11 6 3.6617 -4.0020 -0.4893 12 6 3.0042 -2.8081 -0.1430 13 6 2.7094 -2.5227 1.2046 14 1 1.7663 -2.0658 1.4660 15 6 3.6387 -2.8311 2.2048 16 7 4.8515 -3.1998 1.8799 17 14 3.1476 -2.7162 4.0035 18 1 2.6035 -4.0230 4.4524 19 1 4.3381 -2.3687 4.8203 20 1 2.1110 -1.6657 4.1674 21 6 2.6411 -1.8971 -1.1633 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 -0.8899 27 1 1.6766 1.9564 0.8901 28 1 3.1300 1.4425 -0.0005 29 1 3.8306 -3.6361 -3.8433 30 1 4.4568 -5.2069 -2.0575 31 1 3.9415 -4.7027 0.2833 32 1 5.4953 -3.4139 2.5731 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261351394.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:12 Heat of formation + Delta-G solvation = 15.405827 kcal Electronic energy + Delta-G solvation = -18259.731228 eV Core-core repulsion = 15381.167649 eV Total energy + Delta-G solvation = -2878.563578 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.28752 -39.26500 -39.05998 -36.64637 -35.39086 -33.02930 -31.76389 -30.28755 -28.16771 -27.35019 -24.99652 -24.22860 -23.15998 -20.88950 -19.47989 -18.89286 -18.83680 -17.88025 -16.97125 -16.66863 -16.33486 -15.49169 -14.95259 -14.90791 -14.73531 -14.59487 -13.80027 -13.66031 -13.53087 -13.07041 -13.04151 -12.88552 -12.75990 -12.39050 -12.26734 -12.25293 -11.89095 -11.55166 -11.04736 -11.00814 -10.56015 -9.55817 -8.61319 -8.30766 -6.26765 0.08635 0.87156 1.08045 1.41755 1.48533 1.58322 1.67893 2.26632 2.51899 2.76738 3.41495 3.52134 3.93990 4.04079 4.08218 4.32656 4.41738 4.65676 4.68949 4.79507 4.81946 4.83648 4.97195 5.15498 5.25195 5.26915 5.33664 5.40015 5.87335 5.96628 6.00506 6.11647 6.41491 6.49083 6.81466 6.90177 7.35465 8.45322 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.010550 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.771899 B = 2653.363834 C = 3727.378932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 C -0.158 4.158 4 N -0.425 5.425 5 O -0.059 6.059 6 C 0.470 3.530 7 O -0.519 6.519 8 C -0.278 4.278 9 C -0.120 4.120 10 C -0.132 4.132 11 C -0.125 4.125 12 C 0.079 3.921 13 C -0.499 4.499 14 H 0.094 0.906 15 C 0.042 3.958 16 N -0.839 5.839 17 Si 0.973 3.027 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.247 1.247 21 C 0.089 3.911 22 H 0.051 0.949 23 H 0.107 0.893 24 H 0.059 0.941 25 H 0.134 0.866 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 3.654 4.531 7.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 C -0.216 4.216 4 N -0.168 5.168 5 O -0.073 6.073 6 C 0.321 3.679 7 O -0.412 6.412 8 C -0.285 4.285 9 C -0.140 4.140 10 C -0.151 4.151 11 C -0.147 4.147 12 C 0.074 3.926 13 C -0.530 4.530 14 H 0.111 0.889 15 C -0.171 4.171 16 N -0.466 5.466 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.170 1.170 21 C -0.016 4.016 22 H 0.070 0.930 23 H 0.125 0.875 24 H 0.078 0.922 25 H 0.152 0.848 26 H 0.080 0.920 27 H 0.126 0.874 28 H 0.067 0.933 29 H 0.138 0.862 30 H 0.151 0.849 31 H 0.130 0.870 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.941 4.140 4.170 7.678 hybrid contribution 0.283 -0.165 0.246 0.410 sum -4.659 3.975 4.417 7.550 Atomic orbital electron populations 1.22232 0.92755 1.02722 1.04135 1.22342 0.96107 0.94661 0.82425 1.22139 1.01273 0.93901 1.04298 1.43235 1.59820 1.17806 0.95938 1.84154 1.70823 1.43913 1.08409 1.20868 0.78777 0.83082 0.85219 1.90852 1.61362 1.78587 1.10403 1.20265 1.14651 1.00070 0.93491 1.19936 1.02377 0.92577 0.99119 1.20928 1.02019 0.99792 0.92395 1.21134 1.02905 0.95708 0.94983 1.16852 0.94622 0.89539 0.91545 1.19455 1.03632 1.39443 0.90439 0.88856 1.26524 0.93684 0.91936 1.05003 1.69818 1.04426 1.34888 1.37450 0.85317 0.78926 0.79972 0.76364 1.19239 1.20353 1.17036 1.19627 0.98722 0.87362 0.95915 0.92967 0.87454 0.92162 0.84833 0.91973 0.87367 0.93339 0.86172 0.84854 0.87022 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 9.48 71.98 0.68 -3.52 16 2 C 0.14 4.57 3.34 44.99 0.15 4.72 16 3 C -0.16 -4.25 9.22 71.98 0.66 -3.58 16 4 N -0.42 -17.58 3.06 -318.06 -0.97 -18.56 16 5 O -0.06 -2.52 10.33 90.52 0.93 -1.59 16 6 C 0.47 22.29 8.96 70.08 0.63 22.92 16 7 O -0.52 -26.14 18.06 18.58 0.34 -25.80 16 8 C -0.28 -13.26 6.54 -20.17 -0.13 -13.39 16 9 C -0.12 -5.32 10.09 22.53 0.23 -5.09 16 10 C -0.13 -5.66 10.01 22.26 0.22 -5.43 16 11 C -0.13 -5.92 8.61 22.78 0.20 -5.72 16 12 C 0.08 3.82 5.40 -21.24 -0.11 3.70 16 13 C -0.50 -22.78 7.38 23.33 0.17 -22.61 16 14 H 0.09 3.91 6.13 -2.91 -0.02 3.90 16 15 C 0.04 1.88 5.21 85.26 0.44 2.32 16 16 N -0.84 -39.96 11.61 21.83 0.25 -39.71 16 17 Si 0.97 33.46 29.57 68.60 2.03 35.49 16 18 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 19 H -0.28 -9.54 7.11 99.48 0.71 -8.84 16 20 H -0.25 -7.83 7.11 99.48 0.71 -7.12 16 21 C 0.09 4.20 6.80 40.00 0.27 4.47 16 22 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 25 H 0.13 4.68 4.44 -2.39 -0.01 4.67 16 26 H 0.06 1.64 8.02 -2.39 -0.02 1.62 16 27 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 30 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.11 5.36 7.04 -2.92 -0.02 5.34 16 32 H 0.29 12.55 8.30 -92.71 -0.77 11.79 16 Total: -1.00 -57.51 275.73 7.13 -50.38 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 1.14 Total: 21.00 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 3.41 Total: -21.21 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.72 Total: -58.27 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: 1.27 Total: -27.39 kcal Atomic # 14 Polarization: 33.46 SS G_CDS: 2.03 Total: 35.49 kcal Total: -57.51 7.13 -50.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261351394.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.787 kcal (2) G-P(sol) polarization free energy of solvation -57.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds