Wall clock time and date at job start Mon Mar 30 2020 05:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47025 * 2 1 4 4 N 1.46496 * 109.47085 * 120.00132 * 2 1 3 5 5 O 1.20893 * 123.47627 * 299.70407 * 4 2 1 6 6 C 1.34441 * 112.77084 * 179.85701 * 5 4 2 7 7 O 1.21707 * 127.43456 * 180.17285 * 6 5 4 8 8 C 1.47020 * 105.13697 * 0.38654 * 6 5 4 9 9 C 1.38168 * 136.21843 * 179.73922 * 8 6 5 10 10 C 1.40663 * 119.12262 * 180.02562 * 9 8 6 11 11 C 1.41215 * 120.09872 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99737 * 154.66629 * 11 10 9 13 13 C 1.39826 * 119.99807 * 334.66443 * 11 10 9 14 14 N 1.30922 * 120.00260 * 342.86488 * 13 11 10 15 15 Si 1.86799 * 119.99916 * 162.87213 * 13 11 10 16 16 H 1.48501 * 109.47240 * 89.99995 * 15 13 11 17 17 H 1.48504 * 109.47154 * 209.99762 * 15 13 11 18 18 H 1.48501 * 109.47109 * 329.99557 * 15 13 11 19 19 C 1.41205 * 119.79730 * 0.02562 * 10 9 8 20 20 C 1.35998 * 120.74631 * 0.02690 * 19 10 9 21 21 C 1.36357 * 123.48165 * 119.99884 * 4 2 1 22 22 H 1.08999 * 109.46853 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46906 * 59.99831 * 1 2 3 24 24 H 1.08996 * 109.46789 * 300.00130 * 1 2 3 25 25 H 1.08995 * 109.47141 * 240.00277 * 2 1 3 26 26 H 1.08995 * 109.46935 * 60.00151 * 3 2 1 27 27 H 1.08996 * 109.46888 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46925 * 300.00006 * 3 2 1 29 29 H 1.07995 * 120.43513 * 0.05389 * 9 8 6 30 30 H 0.96995 * 120.00111 * 179.97438 * 14 13 11 31 31 H 1.08000 * 119.62863 * 180.02562 * 19 10 9 32 32 H 1.08002 * 119.86970 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 8 1.7695 -0.3297 2.3228 6 6 2.3240 -1.1215 3.2572 7 8 2.2437 -1.0071 4.4662 8 6 3.0527 -2.1524 2.5037 9 6 3.8309 -3.2513 2.8133 10 6 4.3749 -4.0209 1.7691 11 6 5.1729 -5.1486 2.0621 12 1 5.2523 -5.9543 1.3472 13 6 5.8601 -5.2220 3.2775 14 7 6.0460 -4.1400 3.9909 15 14 6.5133 -6.8638 3.8835 16 1 7.8940 -7.0653 3.3754 17 1 6.5260 -6.8739 5.3685 18 1 5.6391 -7.9575 3.3885 19 6 4.1207 -3.6625 0.4272 20 6 3.3546 -2.5788 0.1302 21 6 2.8052 -1.8034 1.1537 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 4.0186 -3.5160 3.8433 30 1 6.5224 -4.1910 4.8342 31 1 4.5394 -4.2556 -0.3724 32 1 3.1696 -2.3173 -0.9013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261352280.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:15 Heat of formation + Delta-G solvation = 12.317507 kcal Electronic energy + Delta-G solvation = -17760.798914 eV Core-core repulsion = 14882.101416 eV Total energy + Delta-G solvation = -2878.697498 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.14939 -39.33132 -39.05373 -36.62092 -35.56812 -32.87339 -31.64746 -30.35768 -28.15156 -27.73192 -24.79458 -23.99840 -23.22872 -20.64212 -19.76083 -18.79009 -18.68689 -18.31227 -16.90130 -16.66469 -16.19049 -15.33103 -14.98338 -14.94045 -14.77538 -14.47491 -13.86778 -13.77249 -13.49248 -13.12798 -13.03852 -12.85111 -12.76328 -12.34963 -12.24923 -12.21191 -12.02315 -11.73841 -11.13004 -11.01190 -10.30012 -9.81352 -8.64413 -8.41317 -6.18228 0.07318 0.87055 1.08621 1.41501 1.48334 1.56677 1.63293 2.23404 2.47501 2.68189 3.51548 3.58558 3.92501 3.94463 4.02131 4.19250 4.41160 4.71025 4.75062 4.80932 4.87069 4.89319 4.96228 5.23303 5.25846 5.29274 5.39790 5.46769 5.55979 5.91474 6.09051 6.19141 6.43553 6.54172 6.90302 6.94404 7.30039 8.38009 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.037080 B = 0.006416 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.933214 B = 4363.255375 C = 4862.523781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.163 3.837 3 C -0.165 4.165 4 N -0.442 5.442 5 O -0.060 6.060 6 C 0.468 3.532 7 O -0.523 6.523 8 C -0.263 4.263 9 C -0.096 4.096 10 C 0.042 3.958 11 C -0.489 4.489 12 H 0.091 0.909 13 C 0.027 3.973 14 N -0.840 5.840 15 Si 0.981 3.019 16 H -0.259 1.259 17 H -0.279 1.279 18 H -0.253 1.253 19 C -0.127 4.127 20 C -0.116 4.116 21 C 0.062 3.938 22 H 0.055 0.945 23 H 0.111 0.889 24 H 0.050 0.950 25 H 0.135 0.865 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.284 0.716 31 H 0.139 0.861 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 4.959 -11.911 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.067 3.933 3 C -0.223 4.223 4 N -0.190 5.190 5 O -0.073 6.073 6 C 0.318 3.682 7 O -0.416 6.416 8 C -0.269 4.269 9 C -0.117 4.117 10 C 0.038 3.962 11 C -0.519 4.519 12 H 0.109 0.891 13 C -0.186 4.186 14 N -0.467 5.467 15 Si 0.802 3.198 16 H -0.184 1.184 17 H -0.204 1.204 18 H -0.177 1.177 19 C -0.147 4.147 20 C -0.138 4.138 21 C -0.040 4.040 22 H 0.074 0.926 23 H 0.130 0.870 24 H 0.069 0.931 25 H 0.153 0.847 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.130 0.870 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.157 0.843 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.268 5.496 -11.250 14.002 hybrid contribution 0.521 -0.537 1.355 1.548 sum -5.747 4.959 -9.895 12.471 Atomic orbital electron populations 1.22230 0.92850 1.02956 1.04096 1.21887 0.96040 0.94040 0.81333 1.22239 1.01557 0.94365 1.04121 1.43318 1.52948 1.27788 0.94964 1.84078 1.65822 1.49593 1.07837 1.21052 0.79781 0.81957 0.85378 1.90849 1.64832 1.75220 1.10727 1.20343 1.09786 1.02363 0.94409 1.20429 0.97001 0.94707 0.99601 1.17854 0.93060 0.93939 0.91309 1.19702 1.25135 1.04235 1.02863 0.89058 1.26786 0.94697 1.01055 0.96044 1.69927 1.32618 1.30980 1.13146 0.85212 0.79287 0.77777 0.77511 1.18364 1.20367 1.17695 1.21193 1.00267 0.97335 0.95876 1.19623 1.01393 0.95898 0.96888 1.18769 0.98808 0.91386 0.95031 0.92557 0.87025 0.93064 0.84700 0.93058 0.92839 0.86976 0.88655 0.90555 0.84329 0.82655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.35 71.98 0.67 -2.34 16 2 C 0.16 3.64 3.55 45.00 0.16 3.79 16 3 C -0.16 -3.15 9.35 71.98 0.67 -2.48 16 4 N -0.44 -15.60 3.07 -318.68 -0.98 -16.58 16 5 O -0.06 -2.47 10.42 90.85 0.95 -1.53 16 6 C 0.47 23.59 8.97 70.12 0.63 24.22 16 7 O -0.52 -29.27 18.05 18.67 0.34 -28.93 16 8 C -0.26 -13.40 6.53 -20.16 -0.13 -13.53 16 9 C -0.10 -5.33 8.72 22.85 0.20 -5.13 16 10 C 0.04 2.14 5.57 -21.23 -0.12 2.02 16 11 C -0.49 -25.14 9.03 23.39 0.21 -24.93 16 12 H 0.09 4.31 7.90 -2.91 -0.02 4.28 16 13 C 0.03 1.39 5.14 85.21 0.44 1.83 16 14 N -0.84 -46.15 10.96 21.81 0.24 -45.91 16 15 Si 0.98 38.51 29.59 68.60 2.03 40.54 16 16 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 17 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 18 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 19 C -0.13 -5.27 9.69 22.48 0.22 -5.06 16 20 C -0.12 -4.21 9.70 22.09 0.21 -3.99 16 21 C 0.06 2.56 6.84 39.62 0.27 2.83 16 22 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 25 H 0.14 2.32 7.21 -2.39 -0.02 2.30 16 26 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 5.85 6.20 -2.91 -0.02 5.84 16 30 H 0.28 14.46 8.30 -92.71 -0.77 13.69 16 31 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.16 3.94 7.50 -2.91 -0.02 3.92 16 Total: -1.00 -68.47 279.84 7.14 -61.33 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.13 Total: 13.86 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 3.44 Total: -22.78 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -0.74 Total: -62.49 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: 1.28 Total: -30.46 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -68.47 7.14 -61.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261352280.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.644 kcal (2) G-P(sol) polarization free energy of solvation -68.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds