Wall clock time and date at job start Mon Mar 30 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47411 * 2 1 4 4 O 1.20950 * 123.60800 * 269.97705 * 3 2 1 5 5 C 1.34376 * 112.71567 * 180.02562 * 4 3 2 6 6 O 1.21741 * 127.34762 * 180.02562 * 5 4 3 7 7 C 1.46813 * 105.31000 * 0.02562 * 5 4 3 8 8 C 1.38901 * 136.32283 * 179.97438 * 7 5 4 9 9 C 1.36856 * 119.57707 * 180.32223 * 8 7 5 10 10 C 1.38861 * 120.47478 * 359.37142 * 9 8 7 11 11 C 1.50698 * 119.58191 * 180.31787 * 10 9 8 12 12 C 1.50695 * 109.47609 * 270.34339 * 11 10 9 13 13 H 1.08001 * 119.99954 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00283 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00161 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00042 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47520 * 89.99793 * 16 14 12 18 18 H 1.48500 * 109.47095 * 209.99685 * 16 14 12 19 19 H 1.48496 * 109.47377 * 329.99520 * 16 14 12 20 20 C 1.37806 * 120.83846 * 0.66937 * 10 9 8 21 21 C 1.36911 * 123.60144 * 90.01242 * 3 2 1 22 22 H 1.08998 * 109.46989 * 299.99797 * 1 2 3 23 23 H 1.09000 * 109.47350 * 59.99781 * 1 2 3 24 24 H 1.09002 * 109.47095 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47426 * 240.00046 * 2 1 3 26 26 H 1.09000 * 109.47350 * 120.00219 * 2 1 3 27 27 H 1.08002 * 120.20843 * 0.03632 * 8 7 5 28 28 H 1.07998 * 119.76052 * 179.69900 * 9 8 7 29 29 H 1.09009 * 109.46948 * 30.34280 * 11 10 9 30 30 H 1.08996 * 109.47469 * 150.33668 * 11 10 9 31 31 H 0.96995 * 120.00216 * 180.02562 * 15 14 12 32 32 H 1.08000 * 120.16811 * 179.63460 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 8 2.2419 2.0122 -1.0073 5 6 2.6823 3.2561 -0.7534 6 8 2.9850 4.1123 -1.5642 7 6 2.7204 3.3626 0.7104 8 6 3.0660 4.3369 1.6381 9 6 2.9750 4.0592 2.9751 10 6 2.5283 2.8175 3.4076 11 6 2.4291 2.5358 4.8847 12 6 3.7354 1.9681 5.3767 13 1 4.5554 1.8251 4.6885 14 6 3.8835 1.6301 6.7052 15 7 2.8849 1.8037 7.5431 16 14 5.5026 0.9257 7.3148 17 1 6.3898 2.0325 7.7543 18 1 5.2463 0.0132 8.4580 19 1 6.1590 0.1714 6.2170 20 6 2.1813 1.8373 2.5033 21 6 2.2712 2.0955 1.1403 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.4087 5.3059 1.3064 28 1 3.2476 4.8129 3.6989 29 1 2.2117 3.4616 5.4174 30 1 1.6298 1.8169 5.0646 31 1 2.9892 1.5663 8.4778 32 1 1.8408 0.8734 2.8517 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261353243.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:25 Heat of formation + Delta-G solvation = 28.027663 kcal Electronic energy + Delta-G solvation = -17379.023859 eV Core-core repulsion = 14501.007604 eV Total energy + Delta-G solvation = -2878.016254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.18951 -38.45189 -37.92377 -34.77883 -33.65715 -31.86251 -30.97514 -28.94344 -27.73679 -24.36754 -23.71091 -23.54866 -21.34168 -20.12424 -18.02486 -17.65759 -17.50298 -16.43863 -15.72101 -15.27165 -14.69340 -14.27541 -14.13618 -13.83019 -13.44364 -13.27570 -12.76972 -12.58152 -12.25424 -12.10855 -11.64005 -11.44999 -11.42292 -10.99847 -10.75498 -10.61952 -10.06086 -9.80685 -9.67511 -9.48981 -8.54150 -8.26868 -7.28977 -6.16800 -4.21528 1.16592 1.81403 1.98664 2.75660 3.23866 3.30815 3.34267 3.52611 4.14288 4.37673 4.45257 4.80947 4.83801 4.93465 5.06667 5.19088 5.28097 5.52930 5.59959 5.70483 5.79120 5.92633 5.99040 6.34333 6.39086 6.80500 6.84608 6.93365 7.27587 7.41510 7.60695 7.61855 7.78618 8.13938 8.31692 8.83405 9.43291 10.93205 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.005896 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.498204 B = 4748.043164 C = 5234.233887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.144 3.856 3 N -0.444 5.444 4 O -0.070 6.070 5 C 0.495 3.505 6 O -0.473 6.473 7 C -0.298 4.298 8 C 0.000 4.000 9 C -0.167 4.167 10 C 0.049 3.951 11 C 0.043 3.957 12 C -0.516 4.516 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.167 4.167 21 C 0.165 3.835 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.132 0.868 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.919 -3.160 -11.018 12.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.026 3.974 3 N -0.188 5.188 4 O -0.086 6.086 5 C 0.343 3.657 6 O -0.361 6.361 7 C -0.304 4.304 8 C -0.018 4.018 9 C -0.187 4.187 10 C 0.047 3.953 11 C 0.006 3.994 12 C -0.554 4.554 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.189 4.189 21 C 0.061 3.939 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.144 0.856 28 H 0.150 0.850 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.938 -3.100 -11.594 12.631 hybrid contribution 0.900 -0.341 0.346 1.023 sum -3.038 -3.441 -11.248 12.148 Atomic orbital electron populations 1.22313 0.94711 1.03164 1.03495 1.21839 0.95050 0.75394 1.05080 1.43070 1.68481 1.11747 0.95486 1.84251 1.75544 1.27400 1.21355 1.20640 0.76811 0.79031 0.89235 1.90960 1.49907 1.38248 1.57017 1.20083 1.19298 0.97679 0.93331 1.20008 0.93469 0.96823 0.91543 1.20837 1.04941 0.98358 0.94547 1.20762 0.85392 0.90568 0.98531 1.18511 0.98321 0.98468 0.84100 1.20974 0.97772 1.42689 0.93950 0.92239 1.24989 0.96827 0.95554 0.96734 1.69942 1.31082 1.47797 1.04184 0.86508 0.83497 0.79080 0.78479 1.20450 1.21095 1.19771 1.19863 1.10624 1.01606 0.86849 1.18988 0.95134 0.90404 0.89376 0.91343 0.91879 0.90288 0.88900 0.87590 0.85637 0.84987 0.94469 0.94714 0.92648 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 10.24 37.15 0.38 -1.17 16 2 C 0.14 1.42 6.88 -4.04 -0.03 1.39 16 3 N -0.44 -6.46 3.32 -58.72 -0.19 -6.66 16 4 O -0.07 -1.13 10.83 -7.84 -0.08 -1.22 16 5 C 0.49 8.97 8.95 34.20 0.31 9.28 16 6 O -0.47 -9.53 18.06 -18.96 -0.34 -9.87 16 7 C -0.30 -5.31 6.54 -105.08 -0.69 -6.00 16 8 C 0.00 0.01 10.04 -39.84 -0.40 -0.39 16 9 C -0.17 -3.03 9.63 -39.85 -0.38 -3.42 16 10 C 0.05 0.97 5.07 -104.55 -0.53 0.44 16 11 C 0.04 1.00 5.08 -29.04 -0.15 0.85 16 12 C -0.52 -13.44 9.09 -34.44 -0.31 -13.75 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -24.89 13.29 55.43 0.74 -24.16 16 16 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 C -0.17 -2.96 9.57 -39.45 -0.38 -3.34 16 21 C 0.17 2.78 6.83 -84.21 -0.57 2.21 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.11 0.94 8.05 -51.93 -0.42 0.52 16 27 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 29 H 0.04 0.91 8.08 -51.92 -0.42 0.49 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 286.71 15.07 4.32 4.32 Total: -1.00 -30.06 286.71 -7.20 -37.26 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -3.76 Total: -2.79 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.85 Total: -12.37 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.54 Total: -30.82 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.43 Total: -11.09 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.06 -7.20 -37.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261353243.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.283 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds