Wall clock time and date at job start Mon Mar 30 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47411 * 2 1 4 4 O 1.20950 * 123.60800 * 269.97705 * 3 2 1 5 5 C 1.34376 * 112.71567 * 180.02562 * 4 3 2 6 6 O 1.21741 * 127.34762 * 180.02562 * 5 4 3 7 7 C 1.46813 * 105.31000 * 0.02562 * 5 4 3 8 8 C 1.38901 * 136.32283 * 179.97438 * 7 5 4 9 9 C 1.36856 * 119.57707 * 180.32223 * 8 7 5 10 10 C 1.38861 * 120.47478 * 359.37142 * 9 8 7 11 11 C 1.50698 * 119.58191 * 180.31787 * 10 9 8 12 12 C 1.50695 * 109.47609 * 270.34339 * 11 10 9 13 13 H 1.08001 * 119.99954 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00283 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00161 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00042 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47520 * 89.99793 * 16 14 12 18 18 H 1.48500 * 109.47095 * 209.99685 * 16 14 12 19 19 H 1.48496 * 109.47377 * 329.99520 * 16 14 12 20 20 C 1.37806 * 120.83846 * 0.66937 * 10 9 8 21 21 C 1.36911 * 123.60144 * 90.01242 * 3 2 1 22 22 H 1.08998 * 109.46989 * 299.99797 * 1 2 3 23 23 H 1.09000 * 109.47350 * 59.99781 * 1 2 3 24 24 H 1.09002 * 109.47095 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47426 * 240.00046 * 2 1 3 26 26 H 1.09000 * 109.47350 * 120.00219 * 2 1 3 27 27 H 1.08002 * 120.20843 * 0.03632 * 8 7 5 28 28 H 1.07998 * 119.76052 * 179.69900 * 9 8 7 29 29 H 1.09009 * 109.46948 * 30.34280 * 11 10 9 30 30 H 1.08996 * 109.47469 * 150.33668 * 11 10 9 31 31 H 0.96995 * 120.00216 * 180.02562 * 15 14 12 32 32 H 1.08000 * 120.16811 * 179.63460 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 8 2.2419 2.0122 -1.0073 5 6 2.6823 3.2561 -0.7534 6 8 2.9850 4.1123 -1.5642 7 6 2.7204 3.3626 0.7104 8 6 3.0660 4.3369 1.6381 9 6 2.9750 4.0592 2.9751 10 6 2.5283 2.8175 3.4076 11 6 2.4291 2.5358 4.8847 12 6 3.7354 1.9681 5.3767 13 1 4.5554 1.8251 4.6885 14 6 3.8835 1.6301 6.7052 15 7 2.8849 1.8037 7.5431 16 14 5.5026 0.9257 7.3148 17 1 6.3898 2.0325 7.7543 18 1 5.2463 0.0132 8.4580 19 1 6.1590 0.1714 6.2170 20 6 2.1813 1.8373 2.5033 21 6 2.2712 2.0955 1.1403 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.4087 5.3059 1.3064 28 1 3.2476 4.8129 3.6989 29 1 2.2117 3.4616 5.4174 30 1 1.6298 1.8169 5.0646 31 1 2.9892 1.5663 8.4778 32 1 1.8408 0.8734 2.8517 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261353243.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:24 Heat of formation + Delta-G solvation = 13.390145 kcal Electronic energy + Delta-G solvation = -17379.658589 eV Core-core repulsion = 14501.007604 eV Total energy + Delta-G solvation = -2878.650985 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.50454 -39.88003 -39.35320 -35.88705 -35.42576 -33.49000 -32.31261 -30.08547 -29.49257 -26.04124 -25.06050 -24.63562 -22.92545 -21.43708 -19.28244 -19.06949 -18.76939 -18.45943 -17.14214 -16.64496 -16.30941 -15.59866 -15.34895 -15.04408 -14.84778 -14.55970 -14.53402 -13.79191 -13.54675 -13.27655 -13.25429 -13.01193 -12.60720 -12.52024 -12.30158 -12.14118 -11.72091 -11.59214 -11.30556 -10.89368 -10.57437 -9.81864 -8.57983 -8.19128 -6.30537 -0.26608 0.43397 0.81490 1.31992 1.44140 1.45862 1.55705 2.14443 2.41838 2.76436 3.14391 3.21611 3.54885 3.95581 4.04641 4.07377 4.29945 4.35882 4.37813 4.58856 4.77675 4.85677 4.93621 4.95000 5.23656 5.27707 5.38240 5.41220 5.58607 5.76287 5.88986 5.93660 6.17222 6.20744 6.81613 6.99126 7.38166 8.90853 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.005896 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.498204 B = 4748.043164 C = 5234.233887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.130 3.870 3 N -0.436 5.436 4 O -0.060 6.060 5 C 0.491 3.509 6 O -0.499 6.499 7 C -0.312 4.312 8 C 0.007 3.993 9 C -0.174 4.174 10 C 0.029 3.971 11 C 0.052 3.948 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.011 3.989 15 N -0.926 5.926 16 Si 0.959 3.041 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.266 1.266 20 C -0.163 4.163 21 C 0.171 3.829 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.108 0.892 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.148 0.852 28 H 0.137 0.863 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.266 0.734 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 -4.373 -12.039 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.015 3.985 3 N -0.178 5.178 4 O -0.075 6.075 5 C 0.341 3.659 6 O -0.390 6.390 7 C -0.319 4.319 8 C -0.011 4.011 9 C -0.193 4.193 10 C 0.028 3.972 11 C 0.015 3.985 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.784 3.216 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.185 4.185 21 C 0.064 3.936 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.127 0.873 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.166 0.834 28 H 0.155 0.845 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.503 -4.355 -12.635 13.816 hybrid contribution 0.689 -0.029 0.584 0.904 sum -2.814 -4.384 -12.052 13.129 Atomic orbital electron populations 1.22287 0.93567 1.04811 1.02491 1.22392 0.95970 0.73028 1.07123 1.43726 1.67076 1.12575 0.94413 1.84269 1.74693 1.26759 1.21737 1.20618 0.76899 0.79377 0.89052 1.90941 1.51322 1.39260 1.57453 1.20294 1.19686 0.98457 0.93421 1.20179 0.92517 0.97657 0.90795 1.20856 1.05240 0.97945 0.95267 1.20475 0.87810 0.92158 0.96764 1.18247 0.96860 0.96785 0.86617 1.21294 0.98665 1.42364 0.94166 0.92478 1.25789 0.99989 0.95952 0.97018 1.70049 1.33034 1.48998 1.04514 0.85527 0.79572 0.78440 0.78023 1.20038 1.20691 1.19056 1.19809 1.10146 1.01575 0.86974 1.18901 0.94629 0.90484 0.89606 0.92840 0.92344 0.87315 0.86220 0.86219 0.83414 0.84516 0.96498 0.96307 0.92530 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 10.24 71.98 0.74 -1.79 16 2 C 0.13 2.16 6.88 86.38 0.59 2.76 16 3 N -0.44 -11.66 3.32 -339.69 -1.13 -12.79 16 4 O -0.06 -1.80 10.83 91.43 0.99 -0.81 16 5 C 0.49 17.16 8.95 70.06 0.63 17.79 16 6 O -0.50 -19.67 18.06 18.57 0.34 -19.34 16 7 C -0.31 -10.73 6.54 -20.16 -0.13 -10.86 16 8 C 0.01 0.23 10.04 22.10 0.22 0.46 16 9 C -0.17 -6.23 9.63 22.09 0.21 -6.01 16 10 C 0.03 1.17 5.07 -19.82 -0.10 1.07 16 11 C 0.05 2.48 5.08 29.10 0.15 2.63 16 12 C -0.53 -27.61 9.09 25.60 0.23 -27.38 16 13 H 0.06 2.96 7.74 -2.91 -0.02 2.93 16 14 C 0.01 0.61 5.46 84.65 0.46 1.07 16 15 N -0.93 -52.31 13.29 21.45 0.28 -52.02 16 16 Si 0.96 41.77 29.54 68.60 2.03 43.79 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 C -0.16 -5.62 9.57 22.35 0.21 -5.41 16 21 C 0.17 5.47 6.83 39.25 0.27 5.74 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.12 1.74 8.05 -2.39 -0.02 1.72 16 27 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 28 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 29 H 0.02 0.86 8.08 -2.38 -0.02 0.84 16 30 H 0.02 0.94 8.07 -2.39 -0.02 0.92 16 31 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -63.89 286.71 7.12 -56.77 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 1.12 Total: 4.34 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 3.48 Total: -19.94 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.84 Total: -64.81 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 1.33 Total: -20.15 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -63.89 7.12 -56.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261353243.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.158 kcal (2) G-P(sol) polarization free energy of solvation -63.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds