Wall clock time and date at job start Mon Mar 30 2020 05:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 N 1.46503 * 109.46976 * 119.99468 * 2 1 3 5 5 O 1.20995 * 123.62681 * 299.70911 * 4 2 1 6 6 C 1.34511 * 112.56947 * 179.81878 * 5 4 2 7 7 O 1.21821 * 127.35751 * 180.15053 * 6 5 4 8 8 C 1.46053 * 105.29202 * 0.42001 * 6 5 4 9 9 C 1.36787 * 123.62819 * 119.99940 * 4 2 1 10 10 C 1.39361 * 135.00352 * 0.02950 * 9 4 2 11 11 C 1.38138 * 120.90409 * 179.97438 * 10 9 4 12 12 C 1.37966 * 121.78202 * 359.97438 * 11 10 9 13 13 C 1.40982 * 119.94074 * 359.97438 * 12 11 10 14 14 C 1.40750 * 120.80949 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00140 * 155.41385 * 14 13 12 16 16 C 1.40235 * 120.00140 * 335.42355 * 14 13 12 17 17 N 1.30660 * 119.99778 * 343.17958 * 16 14 13 18 18 Si 1.86799 * 120.00343 * 163.17644 * 16 14 13 19 19 H 1.48500 * 109.47106 * 89.99907 * 18 16 14 20 20 H 1.48498 * 109.47055 * 209.99632 * 18 16 14 21 21 H 1.48493 * 109.47016 * 329.99940 * 18 16 14 22 22 H 1.09002 * 109.47009 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46630 * 60.00808 * 1 2 3 24 24 H 1.08996 * 109.47782 * 300.00299 * 1 2 3 25 25 H 1.09001 * 109.47149 * 239.99430 * 2 1 3 26 26 H 1.08996 * 109.47133 * 59.99303 * 3 2 1 27 27 H 1.08997 * 109.47049 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46805 * 299.99085 * 3 2 1 29 29 H 1.08003 * 119.55175 * 359.97160 * 10 9 4 30 30 H 1.07996 * 119.10770 * 179.97438 * 11 10 9 31 31 H 1.07991 * 120.02813 * 180.02562 * 12 11 10 32 32 H 0.97005 * 120.00269 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 8 1.7709 -0.3317 2.3250 6 6 2.3282 -1.1289 3.2540 7 8 2.2513 -1.0189 4.4648 8 6 3.0509 -2.1508 2.5013 9 6 2.8077 -1.8069 1.1573 10 6 3.3606 -2.5881 0.1443 11 6 4.1396 -3.6892 0.4425 12 6 4.4035 -4.0615 1.7446 13 6 3.8727 -3.3098 2.8127 14 6 4.1298 -3.6735 4.1479 15 1 4.0808 -2.9294 4.9292 16 6 4.4496 -5.0018 4.4637 17 7 4.1951 -5.9561 3.6083 18 14 5.2396 -5.4070 6.1072 19 1 4.1805 -5.6848 7.1104 20 1 6.1063 -6.6036 5.9582 21 1 6.0599 -4.2548 6.5595 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.6765 1.9564 0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 3.1776 -2.3291 -0.8881 30 1 4.5533 -4.2744 -0.3653 31 1 5.0166 -4.9275 1.9453 32 1 4.4159 -6.8751 3.8268 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261356188.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:18 Heat of formation + Delta-G solvation = 6.475384 kcal Electronic energy + Delta-G solvation = -17896.036747 eV Core-core repulsion = 15017.085916 eV Total energy + Delta-G solvation = -2878.950831 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.99282 -39.05124 -38.65965 -36.57520 -35.80484 -32.76172 -31.82203 -30.07256 -28.18023 -27.48187 -24.86059 -23.90131 -23.24882 -20.94422 -19.35168 -18.65097 -18.50119 -18.18329 -17.02162 -16.55448 -16.40567 -15.36306 -14.90352 -14.80843 -14.67928 -14.53742 -13.74718 -13.67804 -13.37508 -13.23829 -13.05534 -12.88572 -12.82898 -12.29915 -12.26036 -12.03730 -12.02113 -11.82805 -11.26799 -10.84316 -10.38474 -9.59720 -8.91362 -8.33038 -6.58562 0.26821 1.00519 1.15838 1.33675 1.44790 1.51080 1.77828 2.13432 2.54270 2.59574 3.52532 3.70796 3.99721 4.03379 4.17881 4.21597 4.58739 4.67357 4.68391 4.82970 4.83965 4.89690 4.99460 5.10043 5.19532 5.23242 5.26277 5.52917 5.76310 5.92112 6.08754 6.24769 6.50660 6.61898 6.73160 6.79868 7.37382 8.03007 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.033760 B = 0.007159 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.179222 B = 3910.125282 C = 4489.467799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 C -0.162 4.162 4 N -0.444 5.444 5 O -0.082 6.082 6 C 0.469 3.531 7 O -0.538 6.538 8 C -0.411 4.411 9 C 0.189 3.811 10 C -0.283 4.283 11 C -0.023 4.023 12 C -0.241 4.241 13 C 0.167 3.833 14 C -0.451 4.451 15 H 0.068 0.932 16 C 0.040 3.960 17 N -0.777 5.777 18 Si 0.987 3.013 19 H -0.262 1.262 20 H -0.244 1.244 21 H -0.263 1.263 22 H 0.052 0.948 23 H 0.114 0.886 24 H 0.050 0.950 25 H 0.133 0.867 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.113 0.887 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 4.704 -9.959 11.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.064 3.936 3 C -0.220 4.220 4 N -0.189 5.189 5 O -0.097 6.097 6 C 0.325 3.675 7 O -0.433 6.433 8 C -0.418 4.418 9 C 0.084 3.916 10 C -0.307 4.307 11 C -0.042 4.042 12 C -0.262 4.262 13 C 0.163 3.837 14 C -0.477 4.477 15 H 0.086 0.914 16 C -0.181 4.181 17 N -0.399 5.399 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.168 1.168 21 H -0.187 1.187 22 H 0.071 0.929 23 H 0.132 0.868 24 H 0.069 0.931 25 H 0.151 0.849 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.136 0.864 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.991 4.907 -9.538 10.909 hybrid contribution 0.135 -0.213 1.294 1.318 sum -1.855 4.694 -8.244 9.667 Atomic orbital electron populations 1.22218 0.92914 1.02779 1.04143 1.21909 0.96060 0.94249 0.81381 1.22212 1.01580 0.94053 1.04136 1.43677 1.52132 1.27615 0.95446 1.84147 1.67497 1.50342 1.07668 1.20703 0.79734 0.81807 0.85297 1.90821 1.66025 1.75787 1.10705 1.21263 1.18464 1.08568 0.93510 1.18959 0.90175 0.86833 0.95596 1.19396 1.13623 1.01745 0.95948 1.20858 0.93554 0.93792 0.96007 1.21228 1.08830 1.04444 0.91686 1.18072 0.84671 0.86740 0.94233 1.20040 1.37838 0.95473 0.94350 0.91376 1.26948 0.92844 0.94756 1.03566 1.69735 1.30378 1.02636 1.37193 0.85131 0.79011 0.79349 0.75913 1.18707 1.16758 1.18656 0.92917 0.86774 0.93092 0.84931 0.93090 0.92726 0.86815 0.84475 0.84408 0.86395 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.36 71.98 0.67 -2.86 16 2 C 0.16 4.09 3.56 44.99 0.16 4.25 16 3 C -0.16 -3.45 9.35 71.98 0.67 -2.77 16 4 N -0.44 -17.43 3.08 -319.29 -0.98 -18.42 16 5 O -0.08 -3.76 10.46 90.03 0.94 -2.81 16 6 C 0.47 25.88 8.92 69.85 0.62 26.50 16 7 O -0.54 -32.60 17.92 18.30 0.33 -32.27 16 8 C -0.41 -22.50 6.51 -18.76 -0.12 -22.62 16 9 C 0.19 8.54 6.84 39.28 0.27 8.81 16 10 C -0.28 -11.19 9.77 22.52 0.22 -10.97 16 11 C -0.02 -0.95 9.93 22.18 0.22 -0.73 16 12 C -0.24 -12.10 8.74 22.88 0.20 -11.90 16 13 C 0.17 9.42 5.71 -20.13 -0.11 9.31 16 14 C -0.45 -25.72 9.10 23.37 0.21 -25.51 16 15 H 0.07 4.10 7.76 -2.91 -0.02 4.08 16 16 C 0.04 2.00 5.18 85.35 0.44 2.44 16 17 N -0.78 -38.15 10.93 21.87 0.24 -37.92 16 18 Si 0.99 37.88 29.59 68.60 2.03 39.91 16 19 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 20 H -0.24 -8.25 7.11 99.48 0.71 -7.54 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 23 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.13 2.77 7.26 -2.39 -0.02 2.75 16 26 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.14 4.18 7.53 -2.91 -0.02 4.15 16 30 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 31 H 0.12 5.96 6.18 -2.92 -0.02 5.94 16 32 H 0.30 12.94 8.29 -92.70 -0.77 12.18 16 Total: -1.00 -69.49 280.18 7.14 -62.35 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 1.13 Total: 15.21 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 3.46 Total: -26.05 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.74 Total: -56.33 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: 1.27 Total: -35.08 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -69.49 7.14 -62.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261356188.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.825 kcal (2) G-P(sol) polarization free energy of solvation -69.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds