Wall clock time and date at job start Mon Mar 30 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 O 1.20957 * 123.60439 * 269.70780 * 3 2 1 5 5 C 1.34377 * 112.70936 * 179.82215 * 4 3 2 6 6 O 1.21747 * 127.34694 * 180.19039 * 5 4 3 7 7 C 1.46818 * 105.31230 * 0.41836 * 5 4 3 8 8 C 1.38901 * 136.32128 * 179.80249 * 7 5 4 9 9 C 1.36851 * 119.57587 * 180.02562 * 8 7 5 10 10 C 1.50696 * 119.76493 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.46979 * 269.97773 * 10 9 8 12 12 H 1.08002 * 120.00291 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00224 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99850 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00547 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46976 * 89.99733 * 15 13 11 17 17 H 1.48494 * 109.47455 * 210.00255 * 15 13 11 18 18 H 1.48510 * 109.46897 * 330.00290 * 15 13 11 19 19 C 1.38857 * 120.47611 * 359.95236 * 9 8 7 20 20 C 1.37805 * 120.84431 * 0.02562 * 19 9 8 21 21 C 1.36915 * 123.60250 * 90.00617 * 3 2 1 22 22 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 24 24 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 25 25 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 26 26 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 27 27 H 1.08002 * 120.20966 * 0.02744 * 8 7 5 28 28 H 1.09005 * 109.46628 * 29.97461 * 10 9 8 29 29 H 1.08996 * 109.47557 * 149.97688 * 10 9 8 30 30 H 0.96995 * 119.99958 * 179.97438 * 14 13 11 31 31 H 1.08000 * 119.58017 * 180.02562 * 19 9 8 32 32 H 1.07995 * 120.16877 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 8 2.2463 2.0107 -1.0074 5 6 2.6813 3.2565 -0.7534 6 8 2.9840 4.1128 -1.5643 7 6 2.7191 3.3631 0.7104 8 6 3.0632 4.3380 1.6380 9 6 2.9666 4.0623 2.9750 10 6 3.3394 5.1165 3.9851 11 6 4.8033 4.9946 4.3215 12 1 5.4036 4.2298 3.8512 13 6 5.3764 5.8593 5.2297 14 7 4.6454 6.7903 5.8029 15 14 7.1908 5.7077 5.6473 16 1 7.9847 6.5517 4.7184 17 1 7.4170 6.1603 7.0434 18 1 7.6132 4.2904 5.5118 19 6 2.5271 2.8181 3.4075 20 6 2.1804 1.8377 2.5033 21 6 2.2710 2.0956 1.1404 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.4049 5.3074 1.3063 28 1 3.1435 6.1045 3.5683 29 1 2.7463 4.9795 4.8892 30 1 5.0484 7.3984 6.4421 31 1 2.4559 2.6163 4.4661 32 1 1.8395 0.8740 2.8518 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261359704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:28 Heat of formation + Delta-G solvation = 30.427623 kcal Electronic energy + Delta-G solvation = -17302.572836 eV Core-core repulsion = 14424.660652 eV Total energy + Delta-G solvation = -2877.912184 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.18667 -38.46249 -37.90954 -34.89391 -33.52941 -31.85095 -30.72155 -29.46636 -27.43670 -24.34415 -23.77793 -23.39518 -21.49345 -20.21912 -18.00392 -17.66366 -17.53836 -16.34917 -15.63912 -15.27810 -14.65603 -14.32449 -14.16626 -13.86242 -13.56959 -13.24220 -12.73276 -12.62122 -12.29691 -12.10340 -11.62349 -11.55695 -11.33921 -11.12706 -10.64129 -10.60942 -9.91849 -9.85816 -9.60309 -9.06299 -8.73692 -8.45152 -7.12638 -6.06731 -4.11579 1.09244 1.84719 1.95452 2.73414 3.29721 3.36230 3.39459 3.50171 4.15618 4.39933 4.44652 4.71582 4.76713 4.86384 4.95670 5.17762 5.27899 5.41635 5.49494 5.60853 5.82074 5.86822 6.06376 6.25566 6.30074 6.82564 6.85643 6.98218 7.31895 7.51183 7.62530 7.71746 7.88253 8.26874 8.29395 8.93619 9.52988 11.02386 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.032868 B = 0.005410 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.693148 B = 5174.343189 C = 5526.329861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.147 3.853 3 N -0.448 5.448 4 O -0.071 6.071 5 C 0.494 3.506 6 O -0.465 6.465 7 C -0.267 4.267 8 C 0.000 4.000 9 C -0.083 4.083 10 C 0.053 3.947 11 C -0.516 4.516 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.034 4.034 20 C -0.164 4.164 21 C 0.139 3.861 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.131 0.869 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.134 0.866 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 -14.308 -7.378 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.029 3.971 3 N -0.192 5.192 4 O -0.086 6.086 5 C 0.341 3.659 6 O -0.352 6.352 7 C -0.273 4.273 8 C -0.019 4.019 9 C -0.085 4.085 10 C 0.016 3.984 11 C -0.554 4.554 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.722 3.278 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.053 4.053 20 C -0.186 4.186 21 C 0.035 3.965 22 H 0.096 0.904 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.149 0.851 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.152 0.848 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.907 -14.061 -8.004 18.008 hybrid contribution 1.063 0.042 0.191 1.081 sum -6.843 -14.019 -7.813 17.447 Atomic orbital electron populations 1.22320 0.94854 1.02988 1.03547 1.21758 0.94905 0.75632 1.04794 1.42930 1.69101 1.11748 0.95468 1.84256 1.75739 1.27311 1.21303 1.20696 0.76898 0.79014 0.89319 1.90986 1.49135 1.38099 1.56938 1.20286 1.16362 0.97265 0.93403 1.20087 0.93316 0.97441 0.91080 1.20374 0.96842 0.96770 0.94525 1.18309 0.96772 0.91483 0.91818 1.21087 0.93751 1.16167 1.24370 0.92432 1.25000 0.98128 0.95153 0.95910 1.69949 1.35899 1.18606 1.28735 0.86549 0.85152 0.78473 0.77613 1.20540 1.21158 1.19819 1.21187 0.92838 0.91800 0.99477 1.19842 1.09936 1.01017 0.87800 1.18796 0.97555 0.90817 0.89292 0.90435 0.91505 0.91762 0.88951 0.88032 0.85075 0.95101 0.95042 0.92781 0.84770 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 10.24 37.16 0.38 -0.90 16 2 C 0.15 1.22 6.88 -4.04 -0.03 1.19 16 3 N -0.45 -6.08 3.32 -58.71 -0.19 -6.27 16 4 O -0.07 -1.13 10.83 -7.85 -0.09 -1.21 16 5 C 0.49 9.23 8.95 34.20 0.31 9.54 16 6 O -0.46 -9.83 18.06 -18.96 -0.34 -10.18 16 7 C -0.27 -4.95 6.54 -105.08 -0.69 -5.64 16 8 C 0.00 -0.01 9.67 -39.84 -0.39 -0.39 16 9 C -0.08 -1.70 5.04 -104.90 -0.53 -2.23 16 10 C 0.05 1.30 5.09 -29.04 -0.15 1.15 16 11 C -0.52 -13.95 9.09 -34.44 -0.31 -14.26 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 15 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.03 -0.58 9.65 -39.51 -0.38 -0.96 16 20 C -0.16 -2.35 9.94 -39.45 -0.39 -2.75 16 21 C 0.14 2.17 6.83 -84.21 -0.57 1.60 16 22 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.10 0.65 8.05 -51.93 -0.42 0.24 16 27 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 28 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 29 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 286.72 15.07 4.32 4.32 Total: -1.00 -31.48 286.72 -7.19 -38.68 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: -3.76 Total: -4.33 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.85 Total: -12.11 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.54 Total: -31.32 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.43 Total: -11.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.48 -7.19 -38.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261359704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.105 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds