Wall clock time and date at job start Mon Mar 30 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 O 1.20957 * 123.60439 * 269.70780 * 3 2 1 5 5 C 1.34377 * 112.70936 * 179.82215 * 4 3 2 6 6 O 1.21747 * 127.34694 * 180.19039 * 5 4 3 7 7 C 1.46818 * 105.31230 * 0.41836 * 5 4 3 8 8 C 1.38901 * 136.32128 * 179.80249 * 7 5 4 9 9 C 1.36851 * 119.57587 * 180.02562 * 8 7 5 10 10 C 1.50696 * 119.76493 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.46979 * 269.97773 * 10 9 8 12 12 H 1.08002 * 120.00291 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00224 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99850 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00547 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46976 * 89.99733 * 15 13 11 17 17 H 1.48494 * 109.47455 * 210.00255 * 15 13 11 18 18 H 1.48510 * 109.46897 * 330.00290 * 15 13 11 19 19 C 1.38857 * 120.47611 * 359.95236 * 9 8 7 20 20 C 1.37805 * 120.84431 * 0.02562 * 19 9 8 21 21 C 1.36915 * 123.60250 * 90.00617 * 3 2 1 22 22 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 24 24 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 25 25 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 26 26 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 27 27 H 1.08002 * 120.20966 * 0.02744 * 8 7 5 28 28 H 1.09005 * 109.46628 * 29.97461 * 10 9 8 29 29 H 1.08996 * 109.47557 * 149.97688 * 10 9 8 30 30 H 0.96995 * 119.99958 * 179.97438 * 14 13 11 31 31 H 1.08000 * 119.58017 * 180.02562 * 19 9 8 32 32 H 1.07995 * 120.16877 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 8 2.2463 2.0107 -1.0074 5 6 2.6813 3.2565 -0.7534 6 8 2.9840 4.1128 -1.5643 7 6 2.7191 3.3631 0.7104 8 6 3.0632 4.3380 1.6380 9 6 2.9666 4.0623 2.9750 10 6 3.3394 5.1165 3.9851 11 6 4.8033 4.9946 4.3215 12 1 5.4036 4.2298 3.8512 13 6 5.3764 5.8593 5.2297 14 7 4.6454 6.7903 5.8029 15 14 7.1908 5.7077 5.6473 16 1 7.9847 6.5517 4.7184 17 1 7.4170 6.1603 7.0434 18 1 7.6132 4.2904 5.5118 19 6 2.5271 2.8181 3.4075 20 6 2.1804 1.8377 2.5033 21 6 2.2710 2.0956 1.1404 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.4049 5.3074 1.3063 28 1 3.1435 6.1045 3.5683 29 1 2.7463 4.9795 4.8892 30 1 5.0484 7.3984 6.4421 31 1 2.4559 2.6163 4.4661 32 1 1.8395 0.8740 2.8518 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261359704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:27 Heat of formation + Delta-G solvation = 13.482075 kcal Electronic energy + Delta-G solvation = -17303.307650 eV Core-core repulsion = 14424.660652 eV Total energy + Delta-G solvation = -2878.646998 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.47498 -39.87864 -39.36480 -36.01081 -35.25992 -33.46689 -32.07765 -30.65970 -29.10862 -26.05384 -24.86956 -24.59858 -23.11588 -21.48462 -19.22641 -19.09055 -18.74979 -18.45089 -17.05675 -16.61798 -16.33865 -15.62811 -15.31868 -15.04413 -14.88996 -14.55860 -14.46853 -13.80015 -13.42648 -13.32311 -13.26030 -12.89613 -12.75018 -12.50341 -12.39378 -12.12647 -11.62595 -11.52546 -11.35504 -10.62946 -10.57532 -10.10266 -8.50305 -8.12891 -6.29759 -0.30944 0.46480 0.83084 1.30989 1.42128 1.43568 1.53983 2.11718 2.41387 2.77500 3.14033 3.23058 3.54394 3.99453 4.09708 4.12083 4.29950 4.40398 4.42863 4.56504 4.80009 4.89732 4.95098 4.98636 5.28914 5.29945 5.38626 5.39761 5.62367 5.77753 5.92675 5.96949 6.19947 6.21632 6.83199 6.95543 7.38953 8.91805 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.032868 B = 0.005410 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.693148 B = 5174.343189 C = 5526.329861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.131 3.869 3 N -0.435 5.435 4 O -0.059 6.059 5 C 0.485 3.515 6 O -0.505 6.505 7 C -0.295 4.295 8 C -0.018 4.018 9 C -0.107 4.107 10 C 0.061 3.939 11 C -0.529 4.529 12 H 0.055 0.945 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.960 3.040 16 H -0.279 1.279 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.032 4.032 20 C -0.136 4.136 21 C 0.156 3.844 22 H 0.110 0.890 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.113 0.887 26 H 0.134 0.866 27 H 0.108 0.892 28 H -0.002 1.002 29 H 0.018 0.982 30 H 0.265 0.735 31 H 0.152 0.848 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 -18.131 -7.109 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.016 3.984 3 N -0.178 5.178 4 O -0.074 6.074 5 C 0.334 3.666 6 O -0.395 6.395 7 C -0.301 4.301 8 C -0.037 4.037 9 C -0.109 4.109 10 C 0.024 3.976 11 C -0.567 4.567 12 H 0.074 0.926 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.785 3.215 16 H -0.205 1.205 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.051 4.051 20 C -0.157 4.157 21 C 0.049 3.951 22 H 0.128 0.872 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.132 0.868 26 H 0.152 0.848 27 H 0.126 0.874 28 H 0.017 0.983 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.169 0.831 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.243 -17.954 -7.753 21.223 hybrid contribution 1.042 1.069 0.048 1.493 sum -7.201 -16.885 -7.706 19.908 Atomic orbital electron populations 1.22308 0.93694 1.04782 1.02518 1.22458 0.95800 0.72606 1.07517 1.43807 1.67136 1.12710 0.94195 1.84280 1.74617 1.26267 1.22191 1.20724 0.77152 0.79552 0.89168 1.90948 1.51319 1.39600 1.57662 1.20230 1.18052 0.98657 0.93210 1.19854 0.94976 0.97317 0.91592 1.20006 0.99834 0.97579 0.93489 1.18047 0.95675 0.91566 0.92281 1.21433 0.95137 1.15977 1.24105 0.92636 1.25860 1.02619 0.94791 0.95867 1.70068 1.37858 1.19503 1.29495 0.85516 0.79668 0.78855 0.77447 1.20466 1.20428 1.18683 1.21351 0.92049 0.90731 1.01006 1.20233 1.07123 1.02154 0.86221 1.18996 0.95886 0.89689 0.90503 0.87191 0.92143 0.93239 0.86837 0.84778 0.87403 0.98333 0.96322 0.92627 0.83069 0.80330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 10.24 71.98 0.74 -0.95 16 2 C 0.13 1.48 6.88 86.38 0.59 2.07 16 3 N -0.44 -10.30 3.32 -339.67 -1.13 -11.43 16 4 O -0.06 -1.77 10.83 91.41 0.99 -0.78 16 5 C 0.49 18.33 8.95 70.07 0.63 18.96 16 6 O -0.50 -22.26 18.06 18.56 0.34 -21.93 16 7 C -0.29 -10.99 6.54 -20.16 -0.13 -11.12 16 8 C -0.02 -0.77 9.67 22.10 0.21 -0.56 16 9 C -0.11 -4.48 5.04 -20.04 -0.10 -4.59 16 10 C 0.06 3.15 5.09 29.10 0.15 3.29 16 11 C -0.53 -29.35 9.09 25.60 0.23 -29.12 16 12 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 13 C 0.01 0.39 5.46 84.65 0.46 0.85 16 14 N -0.93 -55.12 13.29 21.45 0.28 -54.83 16 15 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 19 C -0.03 -1.03 9.65 22.32 0.22 -0.82 16 20 C -0.14 -3.31 9.94 22.35 0.22 -3.09 16 21 C 0.16 4.42 6.83 39.25 0.27 4.69 16 22 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 23 H 0.06 0.69 8.14 -2.38 -0.02 0.68 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.11 0.91 8.14 -2.38 -0.02 0.90 16 26 H 0.13 0.78 8.05 -2.39 -0.02 0.76 16 27 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 28 H 0.00 -0.09 8.08 -2.38 -0.02 -0.11 16 29 H 0.02 0.97 8.08 -2.39 -0.02 0.96 16 30 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -72.13 286.72 7.12 -65.01 By element: Atomic # 1 Polarization: -2.57 SS G_CDS: 1.12 Total: -1.45 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 3.49 Total: -20.37 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: -0.84 Total: -66.26 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 1.33 Total: -22.71 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -72.13 7.12 -65.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261359704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.490 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds