Wall clock time and date at job start Mon Mar 30 2020 06:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99621 * 2 1 4 4 H 1.48503 * 109.46993 * 240.00022 * 3 2 1 5 5 H 1.48499 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47390 * 119.99941 * 3 2 1 7 7 C 1.37874 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00165 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47295 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46962 * 179.97438 * 11 10 9 13 13 C 1.46752 * 110.99707 * 50.11481 * 12 11 10 14 14 C 1.53427 * 108.60576 * 174.97949 * 13 12 11 15 15 O 1.43137 * 107.88838 * 296.73129 * 14 13 12 16 16 C 1.36148 * 116.66443 * 45.38217 * 15 14 13 17 17 C 1.38782 * 118.74097 * 165.10029 * 16 15 14 18 18 C 1.38175 * 120.20331 * 179.78758 * 17 16 15 19 19 C 1.38264 * 120.02633 * 0.02562 * 18 17 16 20 20 C 1.38065 * 120.11655 * 0.15532 * 19 18 17 21 21 C 1.38966 * 121.38010 * 345.00867 * 16 15 14 22 22 H 0.97001 * 120.00621 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46902 * 60.00015 * 9 7 2 24 24 H 1.08998 * 109.47486 * 300.00391 * 9 7 2 25 25 H 1.08995 * 109.47408 * 59.99802 * 10 9 7 26 26 H 1.09006 * 109.46819 * 300.00189 * 10 9 7 27 27 H 1.08998 * 109.47206 * 60.00204 * 11 10 9 28 28 H 1.08998 * 109.47358 * 299.99978 * 11 10 9 29 29 H 1.09002 * 109.60450 * 55.25146 * 13 12 11 30 30 H 1.08990 * 109.75901 * 294.80791 * 13 12 11 31 31 H 1.09006 * 109.77512 * 177.13729 * 14 13 12 32 32 H 1.08998 * 109.82142 * 56.36024 * 14 13 12 33 33 H 1.07998 * 119.89975 * 359.80317 * 17 16 15 34 34 H 1.08001 * 119.98878 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.93594 * 180.08383 * 19 18 17 36 36 H 1.08000 * 119.87512 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 6 1.4806 -4.9870 0.0033 12 7 2.4353 -6.1035 0.0037 13 6 3.4448 -5.9318 1.0549 14 6 4.3333 -7.1822 1.0893 15 8 3.5098 -8.2969 1.4474 16 6 2.3100 -8.3992 0.8120 17 6 1.6192 -9.6009 0.8802 18 6 0.3969 -9.7367 0.2502 19 6 -0.1417 -8.6740 -0.4514 20 6 0.5412 -7.4765 -0.5270 21 6 1.7717 -7.3303 0.1057 22 1 -0.4851 0.8400 -0.0004 23 1 0.6243 -2.5574 -0.8880 24 1 0.6249 -2.5563 0.8919 25 1 2.8722 -3.6035 0.8926 26 1 2.8722 -3.6050 -0.8873 27 1 0.8543 -5.0453 -0.8869 28 1 0.8537 -5.0443 0.8931 29 1 2.9515 -5.8068 2.0188 30 1 4.0553 -5.0549 0.8397 31 1 5.1224 -7.0536 1.8302 32 1 4.7739 -7.3497 0.1065 33 1 2.0380 -10.4324 1.4275 34 1 -0.1376 -10.6736 0.3052 35 1 -1.0978 -8.7814 -0.9421 36 1 0.1166 -6.6488 -1.0757 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263769359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:41 Heat of formation + Delta-G solvation = -13.735492 kcal Electronic energy + Delta-G solvation = -17549.553660 eV Core-core repulsion = 14805.559514 eV Total energy + Delta-G solvation = -2743.994146 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97454 -37.43443 -37.02199 -33.73511 -31.57935 -30.82036 -30.28735 -28.14035 -25.81761 -24.35341 -23.27516 -21.66930 -20.43593 -19.78125 -18.04059 -16.87191 -16.53105 -16.22735 -15.11994 -14.82749 -14.75967 -14.41930 -14.12435 -13.86974 -13.61426 -13.16109 -12.88314 -12.27884 -11.83756 -11.79345 -11.61461 -11.41731 -11.02113 -10.90341 -10.70306 -10.60957 -10.44266 -9.89449 -9.63162 -9.44759 -9.13928 -8.44707 -8.38719 -7.47940 -6.03819 -4.06734 1.39434 1.46037 3.26259 3.30837 3.35501 3.37637 3.65400 3.99701 4.42758 4.58462 4.74416 5.00131 5.07036 5.13462 5.31971 5.32223 5.36989 5.46807 5.55833 5.65777 5.74638 5.75274 5.92470 6.09769 6.18670 6.25817 6.52866 6.54768 6.63141 6.75608 6.94361 7.13281 7.15160 7.50664 7.60550 7.73786 7.94734 8.36936 8.99626 9.57605 11.07500 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.037707 B = 0.004552 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.386361 B = 6149.654032 C = 6778.839176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.113 4.113 11 C 0.058 3.942 12 N -0.489 5.489 13 C 0.012 3.988 14 C 0.058 3.942 15 O -0.319 6.319 16 C 0.080 3.920 17 C -0.127 4.127 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.127 4.127 21 C 0.056 3.944 22 H 0.261 0.739 23 H 0.018 0.982 24 H 0.015 0.985 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 -17.346 1.306 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.151 4.151 11 C -0.066 4.066 12 N -0.203 5.203 13 C -0.115 4.115 14 C -0.017 4.017 15 O -0.234 6.234 16 C 0.033 3.967 17 C -0.146 4.146 18 C -0.143 4.143 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.043 4.043 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.974 -17.244 1.016 17.725 hybrid contribution 0.099 1.216 0.460 1.304 sum 4.073 -16.028 1.476 16.603 Atomic orbital electron populations 1.69948 1.06072 1.26797 1.50606 1.25018 0.94846 0.99274 0.95234 0.86647 0.79585 0.83083 0.78629 1.20201 1.21251 1.20249 1.21164 0.92968 0.90953 1.50933 0.92724 1.19053 0.93907 0.91134 0.97329 1.21814 0.99553 0.92676 1.01009 1.22536 0.93486 0.89110 1.01502 1.58877 1.15745 1.01231 1.44489 1.22847 0.95220 0.99785 0.93620 1.23186 0.92415 0.83874 1.02246 1.86185 1.27219 1.47826 1.62120 1.18671 0.87457 0.94155 0.96457 1.20390 0.96062 0.95107 1.03022 1.20799 0.95331 0.99051 0.99075 1.20908 1.00094 0.92974 1.00360 1.21003 0.93496 0.98949 1.01288 1.19064 0.94451 0.91151 0.99644 0.92887 0.96404 0.96649 0.93037 0.92285 0.89996 0.93862 0.92421 0.87327 0.86963 0.90856 0.85489 0.85762 0.85878 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.11 -2.25 4.58 -26.73 -0.12 -2.38 16 11 C 0.06 1.01 4.37 -3.83 -0.02 0.99 16 12 N -0.49 -7.78 4.75 -170.83 -0.81 -8.60 16 13 C 0.01 0.17 4.83 -3.68 -0.02 0.15 16 14 C 0.06 0.70 7.26 37.38 0.27 0.97 16 15 O -0.32 -4.55 10.40 -20.21 -0.21 -4.76 16 16 C 0.08 1.18 6.47 -39.11 -0.25 0.93 16 17 C -0.13 -1.61 9.94 -39.40 -0.39 -2.00 16 18 C -0.12 -1.41 10.04 -39.59 -0.40 -1.80 16 19 C -0.12 -1.51 10.03 -39.64 -0.40 -1.91 16 20 C -0.13 -1.81 9.07 -39.31 -0.36 -2.16 16 21 C 0.06 0.87 5.80 -83.60 -0.49 0.38 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.99 6.43 -51.93 -0.33 0.66 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.08 1.40 6.44 -51.93 -0.33 1.07 16 28 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 29 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.11 1.45 6.55 -51.93 -0.34 1.11 16 31 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.13 1.82 6.14 -52.49 -0.32 1.50 16 LS Contribution 293.98 15.07 4.43 4.43 Total: -1.00 -30.79 293.98 -8.69 -39.48 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.10 Total: -1.29 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -2.72 Total: -19.74 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.08 Total: -34.57 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.21 Total: -4.76 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.79 -8.69 -39.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263769359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.747 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds