Wall clock time and date at job start Mon Mar 30 2020 06:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99621 * 2 1 4 4 H 1.48503 * 109.46993 * 240.00022 * 3 2 1 5 5 H 1.48499 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47390 * 119.99941 * 3 2 1 7 7 C 1.37874 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00165 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47295 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46962 * 179.97438 * 11 10 9 13 13 C 1.46752 * 110.99707 * 50.11481 * 12 11 10 14 14 C 1.53427 * 108.60576 * 174.97949 * 13 12 11 15 15 O 1.43137 * 107.88838 * 296.73129 * 14 13 12 16 16 C 1.36148 * 116.66443 * 45.38217 * 15 14 13 17 17 C 1.38782 * 118.74097 * 165.10029 * 16 15 14 18 18 C 1.38175 * 120.20331 * 179.78758 * 17 16 15 19 19 C 1.38264 * 120.02633 * 0.02562 * 18 17 16 20 20 C 1.38065 * 120.11655 * 0.15532 * 19 18 17 21 21 C 1.38966 * 121.38010 * 345.00867 * 16 15 14 22 22 H 0.97001 * 120.00621 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46902 * 60.00015 * 9 7 2 24 24 H 1.08998 * 109.47486 * 300.00391 * 9 7 2 25 25 H 1.08995 * 109.47408 * 59.99802 * 10 9 7 26 26 H 1.09006 * 109.46819 * 300.00189 * 10 9 7 27 27 H 1.08998 * 109.47206 * 60.00204 * 11 10 9 28 28 H 1.08998 * 109.47358 * 299.99978 * 11 10 9 29 29 H 1.09002 * 109.60450 * 55.25146 * 13 12 11 30 30 H 1.08990 * 109.75901 * 294.80791 * 13 12 11 31 31 H 1.09006 * 109.77512 * 177.13729 * 14 13 12 32 32 H 1.08998 * 109.82142 * 56.36024 * 14 13 12 33 33 H 1.07998 * 119.89975 * 359.80317 * 17 16 15 34 34 H 1.08001 * 119.98878 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.93594 * 180.08383 * 19 18 17 36 36 H 1.08000 * 119.87512 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 6 1.4806 -4.9870 0.0033 12 7 2.4353 -6.1035 0.0037 13 6 3.4448 -5.9318 1.0549 14 6 4.3333 -7.1822 1.0893 15 8 3.5098 -8.2969 1.4474 16 6 2.3100 -8.3992 0.8120 17 6 1.6192 -9.6009 0.8802 18 6 0.3969 -9.7367 0.2502 19 6 -0.1417 -8.6740 -0.4514 20 6 0.5412 -7.4765 -0.5270 21 6 1.7717 -7.3303 0.1057 22 1 -0.4851 0.8400 -0.0004 23 1 0.6243 -2.5574 -0.8880 24 1 0.6249 -2.5563 0.8919 25 1 2.8722 -3.6035 0.8926 26 1 2.8722 -3.6050 -0.8873 27 1 0.8543 -5.0453 -0.8869 28 1 0.8537 -5.0443 0.8931 29 1 2.9515 -5.8068 2.0188 30 1 4.0553 -5.0549 0.8397 31 1 5.1224 -7.0536 1.8302 32 1 4.7739 -7.3497 0.1065 33 1 2.0380 -10.4324 1.4275 34 1 -0.1376 -10.6736 0.3052 35 1 -1.0978 -8.7814 -0.9421 36 1 0.1166 -6.6488 -1.0757 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263769359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:41 Heat of formation + Delta-G solvation = -32.307310 kcal Electronic energy + Delta-G solvation = -17550.358995 eV Core-core repulsion = 14805.559514 eV Total energy + Delta-G solvation = -2744.799481 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.04582 -38.45681 -38.24336 -35.66494 -33.42736 -31.82828 -31.31118 -29.64919 -27.40069 -25.42296 -24.83025 -23.02350 -21.86370 -21.01326 -19.11196 -18.54193 -17.81225 -17.55422 -16.54313 -16.37838 -16.04627 -15.74453 -15.25097 -14.95717 -14.69688 -14.56564 -14.35344 -13.85451 -13.59347 -13.18014 -12.79291 -12.69603 -12.55795 -12.50748 -12.30444 -11.93906 -11.66262 -11.55703 -11.40856 -11.22133 -10.82703 -10.56278 -9.47119 -8.60273 -8.21337 -6.32797 0.36594 0.44277 1.40128 1.42943 1.50885 2.25063 2.40091 2.59597 2.92498 3.12180 3.54865 3.67705 3.96592 4.02350 4.14765 4.20462 4.31480 4.37602 4.39339 4.51929 4.54892 4.63328 4.72982 4.83477 4.94225 4.99340 5.11176 5.20183 5.31773 5.47428 5.59923 5.66609 5.74012 5.81316 5.90813 6.02797 6.22068 6.44378 6.83374 7.36725 8.90407 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.037707 B = 0.004552 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.386361 B = 6149.654032 C = 6778.839176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.095 4.095 11 C 0.072 3.928 12 N -0.494 5.494 13 C 0.008 3.992 14 C 0.061 3.939 15 O -0.328 6.328 16 C 0.062 3.938 17 C -0.132 4.132 18 C -0.113 4.113 19 C -0.126 4.126 20 C -0.144 4.144 21 C 0.028 3.972 22 H 0.264 0.736 23 H -0.006 1.006 24 H -0.010 1.010 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.160 0.840 35 H 0.149 0.851 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.733 -18.463 1.491 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.053 4.053 12 N -0.209 5.209 13 C -0.119 4.119 14 C -0.014 4.014 15 O -0.243 6.243 16 C 0.015 3.985 17 C -0.151 4.151 18 C -0.132 4.132 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.071 4.071 22 H 0.073 0.927 23 H 0.012 0.988 24 H 0.009 0.991 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.163 0.837 32 H 0.095 0.905 33 H 0.165 0.835 34 H 0.178 0.822 35 H 0.166 0.834 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.966 -18.387 1.202 19.084 hybrid contribution -0.269 1.466 0.407 1.545 sum 4.697 -16.921 1.608 17.634 Atomic orbital electron populations 1.70088 1.07839 1.27888 1.51530 1.25976 0.95745 1.03376 0.94643 0.85500 0.78274 0.78057 0.79223 1.19143 1.20896 1.19106 1.21627 0.93591 0.92179 1.50769 0.92000 1.18942 0.94321 0.92891 0.94920 1.21535 0.98323 0.92073 1.01350 1.22218 0.93373 0.88801 1.00911 1.58886 1.15580 1.00915 1.45556 1.22940 0.95108 1.01239 0.92598 1.23364 0.92224 0.82158 1.03621 1.86164 1.27258 1.48522 1.62337 1.18982 0.88008 0.94760 0.96738 1.20774 0.96387 0.94956 1.02969 1.21243 0.94683 1.00044 0.97185 1.21258 1.00820 0.92261 1.00073 1.21165 0.93693 0.99956 1.01639 1.19234 0.95453 0.91132 1.01251 0.92743 0.98779 0.99133 0.92198 0.92229 0.90203 0.94993 0.93486 0.86961 0.83733 0.90539 0.83508 0.82208 0.83371 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -30.77 9.11 25.60 0.23 -30.53 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.10 -3.88 4.58 30.59 0.14 -3.74 16 11 C 0.07 2.59 4.37 86.30 0.38 2.97 16 12 N -0.49 -15.85 4.75 -694.37 -3.30 -19.15 16 13 C 0.01 0.21 4.83 86.47 0.42 0.63 16 14 C 0.06 1.38 7.26 72.13 0.52 1.90 16 15 O -0.33 -8.94 10.40 -95.23 -0.99 -9.93 16 16 C 0.06 1.78 6.47 22.57 0.15 1.92 16 17 C -0.13 -3.06 9.94 22.38 0.22 -2.84 16 18 C -0.11 -2.24 10.04 22.26 0.22 -2.02 16 19 C -0.13 -2.81 10.03 22.23 0.22 -2.58 16 20 C -0.14 -4.08 9.07 22.44 0.20 -3.87 16 21 C 0.03 0.85 5.80 38.25 0.22 1.07 16 22 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 23 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H 0.06 2.32 6.43 -2.39 -0.02 2.31 16 26 H 0.06 2.41 8.14 -2.38 -0.02 2.40 16 27 H 0.08 2.85 6.44 -2.39 -0.02 2.84 16 28 H 0.03 1.20 8.12 -2.39 -0.02 1.18 16 29 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 30 H 0.11 2.94 6.55 -2.39 -0.02 2.93 16 31 H 0.15 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 35 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 36 H 0.13 3.58 6.14 -2.91 -0.02 3.56 16 Total: -1.00 -66.71 293.98 2.62 -64.09 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.06 Total: 10.55 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 3.54 Total: -35.04 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -3.02 Total: -75.65 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.99 Total: -9.93 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -66.71 2.62 -64.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263769359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.782 kcal (2) G-P(sol) polarization free energy of solvation -66.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds