Wall clock time and date at job start Mon Mar 30 2020 06:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00131 * 2 1 4 4 H 1.48503 * 109.47318 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47253 * 299.99810 * 3 2 1 6 6 H 1.48502 * 109.47254 * 59.99815 * 3 2 1 7 7 C 1.37882 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00420 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99814 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47272 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46626 * 304.99970 * 10 9 7 12 12 N 1.46902 * 109.47003 * 65.00031 * 10 9 7 13 13 C 1.46893 * 110.99703 * 205.15475 * 12 10 9 14 14 C 1.53363 * 114.56820 * 202.08447 * 13 12 10 15 15 O 1.43346 * 88.49973 * 220.44708 * 14 13 12 16 16 C 1.43351 * 88.32080 * 28.12687 * 15 14 13 17 17 C 1.50701 * 109.47012 * 185.00244 * 10 9 7 18 18 C 1.38234 * 119.99991 * 286.19825 * 17 10 9 19 19 C 1.38236 * 119.99672 * 179.81094 * 18 17 10 20 20 C 1.38236 * 120.00225 * 0.40079 * 19 18 17 21 21 C 1.38236 * 119.99781 * 359.85478 * 20 19 18 22 22 C 1.38234 * 119.99773 * 106.47501 * 17 10 9 23 23 H 0.96996 * 119.99677 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46788 * 59.99810 * 9 7 2 25 25 H 1.09002 * 109.47351 * 300.00740 * 9 7 2 26 26 H 1.00896 * 110.99781 * 81.20544 * 12 10 9 27 27 H 1.09005 * 113.57090 * 336.36034 * 13 12 10 28 28 H 1.08998 * 113.39337 * 105.52305 * 14 13 12 29 29 H 1.09007 * 113.38927 * 335.36436 * 14 13 12 30 30 H 1.09002 * 113.39467 * 86.75312 * 16 15 14 31 31 H 1.09000 * 113.38973 * 216.90815 * 16 15 14 32 32 H 1.07998 * 119.99799 * 359.97438 * 18 17 10 33 33 H 1.08004 * 119.99483 * 180.22898 * 19 18 17 34 34 H 1.07995 * 119.99749 * 179.82958 * 20 19 18 35 35 H 1.07998 * 119.99911 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.00414 * 359.97438 * 22 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 1 2.9293 -3.5560 -0.8392 12 7 3.0083 -3.6529 1.2580 13 6 4.3109 -4.3100 1.0870 14 6 4.9413 -4.8241 2.3871 15 8 6.2117 -4.3635 1.9090 16 6 5.5171 -3.3635 1.1524 17 6 1.4958 -4.9638 -0.1200 18 6 0.7870 -5.4576 0.9592 19 6 0.0963 -6.6497 0.8453 20 6 0.1213 -7.3520 -0.3451 21 6 0.8344 -6.8608 -1.4226 22 6 1.5219 -5.6668 -1.3100 23 1 -0.4849 0.8400 0.0004 24 1 0.6241 -2.5574 -0.8880 25 1 0.6246 -2.5563 0.8919 26 1 2.4821 -4.0820 2.0042 27 1 4.3360 -5.0194 0.2598 28 1 4.8866 -5.9073 2.4957 29 1 4.5951 -4.2946 3.2748 30 1 5.3209 -2.4521 1.7172 31 1 5.9674 -3.1664 0.1796 32 1 0.7707 -4.9108 1.8903 33 1 -0.4605 -7.0336 1.6873 34 1 -0.4161 -8.2847 -0.4331 35 1 0.8543 -7.4097 -2.3524 36 1 2.0790 -5.2830 -2.1519 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287844563.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:15 Heat of formation + Delta-G solvation = 13.310209 kcal Electronic energy + Delta-G solvation = -17812.114906 eV Core-core repulsion = 15069.293550 eV Total energy + Delta-G solvation = -2742.821357 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45664 -39.09503 -35.67999 -32.68568 -31.09851 -30.62717 -28.92374 -26.98203 -25.98051 -24.30569 -22.46178 -21.88899 -20.13679 -19.70376 -17.05643 -16.28067 -16.11241 -15.95238 -15.45259 -14.82416 -14.56934 -14.46461 -13.69752 -13.37498 -13.08559 -12.65986 -12.40523 -12.27060 -12.14634 -11.92919 -11.21272 -11.03245 -10.86588 -10.68448 -10.52166 -10.42929 -10.15782 -9.73979 -9.46972 -9.04669 -8.67258 -8.31384 -8.27838 -7.87947 -5.91921 -3.90572 1.64552 1.65269 3.36160 3.43979 3.48257 4.05765 4.18008 4.49779 4.53351 4.67680 5.11073 5.14553 5.19569 5.25932 5.39603 5.44895 5.48836 5.63806 5.77403 5.79553 5.82742 6.01614 6.03795 6.19031 6.26024 6.30118 6.37829 6.70856 6.72560 6.78316 6.91635 7.27505 7.42062 7.58913 7.87936 7.91735 8.08289 8.51277 9.14524 9.71103 11.19839 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.008276 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.094252 B = 3382.485384 C = 4818.190905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.051 3.949 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.491 4.491 8 H 0.060 0.940 9 C 0.041 3.959 10 C 0.128 3.872 11 H 0.075 0.925 12 N -0.643 5.643 13 C 0.018 3.982 14 C 0.027 3.973 15 O -0.379 6.379 16 C 0.038 3.962 17 C -0.094 4.094 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.136 4.136 21 C -0.121 4.121 22 C -0.118 4.118 23 H 0.257 0.743 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.337 0.663 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.750 -12.994 1.325 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.529 4.529 8 H 0.078 0.922 9 C 0.004 3.996 10 C 0.018 3.982 11 H 0.094 0.906 12 N -0.275 5.275 13 C -0.093 4.093 14 C -0.051 4.051 15 O -0.297 6.297 16 C -0.039 4.039 17 C -0.096 4.096 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.154 4.154 21 C -0.139 4.139 22 C -0.136 4.136 23 H 0.067 0.933 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.158 0.842 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.168 -12.303 1.288 13.054 hybrid contribution -0.166 0.067 -0.122 0.216 sum 4.003 -12.236 1.166 12.927 Atomic orbital electron populations 1.69976 1.05984 1.26209 1.52005 1.25001 0.94775 0.99086 0.95980 0.86571 0.80172 0.84119 0.77305 1.19782 1.21391 1.21279 1.21136 0.93199 0.90065 1.48548 0.92152 1.19101 0.92730 0.90407 0.97352 1.21064 0.95004 0.91008 0.91102 0.90641 1.60782 1.03203 1.56124 1.07351 1.24373 0.92059 0.95399 0.97511 1.23936 0.83473 1.00135 0.97547 1.89798 1.24690 1.49322 1.65866 1.23940 0.90113 0.93260 0.96619 1.21157 0.97617 0.97204 0.93576 1.20983 0.97553 0.95927 0.99038 1.21074 0.99518 0.95500 0.97643 1.21025 1.00528 1.00087 0.93741 1.21086 0.97946 0.96525 0.98392 1.21104 1.00088 0.94942 0.97497 0.93313 0.96220 0.96209 0.84185 0.89924 0.90416 0.89802 0.89035 0.90188 0.86080 0.86538 0.86750 0.86633 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.49 -13.32 8.84 -34.44 -0.30 -13.63 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.04 1.02 4.56 -27.88 -0.13 0.89 16 10 C 0.13 2.44 2.03 -68.86 -0.14 2.30 16 11 H 0.08 1.48 7.64 -51.93 -0.40 1.08 16 12 N -0.64 -11.13 6.06 -101.88 -0.62 -11.75 16 13 C 0.02 0.27 4.35 -67.29 -0.29 -0.02 16 14 C 0.03 0.36 8.39 24.59 0.21 0.57 16 15 O -0.38 -6.04 12.74 -35.23 -0.45 -6.49 16 16 C 0.04 0.60 8.57 24.64 0.21 0.81 16 17 C -0.09 -1.58 4.79 -104.62 -0.50 -2.08 16 18 C -0.12 -1.82 8.97 -39.58 -0.35 -2.17 16 19 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 20 C -0.14 -1.76 10.05 -39.58 -0.40 -2.16 16 21 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 22 C -0.12 -1.82 9.67 -39.58 -0.38 -2.20 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.34 5.39 6.53 -39.29 -0.26 5.13 16 27 H 0.08 1.24 7.86 -51.93 -0.41 0.83 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.08 8.14 -51.92 -0.42 0.65 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.12 1.82 6.87 -52.49 -0.36 1.46 16 33 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.71 7.99 -52.49 -0.42 1.29 16 LS Contribution 304.68 15.07 4.59 4.59 Total: -1.00 -30.20 304.68 -8.92 -39.12 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.19 Total: 4.36 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -2.98 Total: -20.42 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.12 Total: -37.83 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.45 Total: -6.49 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.20 -8.92 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287844563.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.430 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds